1Q6BA

Solution structure of the c-terminal domain of thermosynechococcus elongatus kaia (thkaia180c); ensemble of 25 structures
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
107
structure length
107
Chain Sequence
AMARMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLCEMYRRSIPREV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Circadian clock protein
molecule keywords Circadian clock protein KaiA homolog
publication title NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: implications for KaiA-KaiC interaction
pubmed doi rcsb
source organism Thermosynechococcus elongatus
total genus 36
structure length 107
sequence length 107
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1240.30 Mainly Alpha Orthogonal Bundle Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 KaiA/RbsU domain 1q6bA00
1SUYA 2J6YA 1V2ZA 1SV1A 2J70A 2J6ZA 4G86A 1Q6AA 1R5QA 5C5EA 1W53A 1R8JA 1Q6BA
chains in the Genus database with same CATH superfamily
3H20A 1QSAA 3WHPA 1UTUA 4M0MA 3IV9A 1Q6AA 1BMTA 1UZ3A 4HH3C 1W53A 5C5EA 2FMME 1Q6BA 3M1MA 1SUYA 1SV1A 2PBIA 1K7YA 2J6ZA 3BULA 4G86A 3EZXA 1R5QA 2I2XB 4X8QA 3BJDA 1R8JA 3L9TA 1K98A 1SLYA 1V2ZA 1QTEA 4JGIA 4HEHA 3IVAA 2J70A 2J6YA 5C8DA
chains in the Genus database with same CATH topology
1SUYA 2J6YA 1V2ZA 1SV1A 2J70A 2J6ZA 4G86A 1Q6AA 1R5QA 5C5EA 1W53A 1R8JA 1Q6BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SUY A;  2J6Y A;  1V2Z A;  1SV1 A;  2J70 A;  2J6Z A;  4G86 A;  1Q6A A;  1R5Q A;  5C5E A;  1W53 A;  1R8J A;  1Q6B A; 
#chains in the Genus database with same CATH topology
 3H20 A;  1QSA A;  3WHP A;  1UTU A;  4M0M A;  3IV9 A;  1Q6A A;  1BMT A;  1UZ3 A;  4HH3 C;  1W53 A;  5C5E A;  2FMM E;  1Q6B A;  3M1M A;  1SUY A;  1SV1 A;  2PBI A;  1K7Y A;  2J6Z A;  3BUL A;  4G86 A;  3EZX A;  1R5Q A;  2I2X B;  4X8Q A;  3BJD A;  1R8J A;  3L9T A;  1K98 A;  1SLY A;  1V2Z A;  1QTE A;  4JGI A;  4HEH A;  3IVA A;  2J70 A;  2J6Y A;  5C8D A; 
#chains in the Genus database with same CATH homology
 1SUY A;  2J6Y A;  1V2Z A;  1SV1 A;  2J70 A;  2J6Z A;  4G86 A;  1Q6A A;  1R5Q A;  5C5E A;  1W53 A;  1R8J A;  1Q6B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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