1Q9JA

Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis
Total Genus 105
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
418
structure length
388
Chain Sequence
MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ligase
molecule keywords Polyketide synthase associated protein 5
publication title Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 105
structure length 388
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16911 PapA_C Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1q9jA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q9jA02
4G0BA 5KJTA 3L60A 2RKTA 4KE4A 1SCZA 2VSQA 1EAAA 1NOCB 1PD5A 2E1VA 2E1TA 1C4TA 5DUAA 2II4A 1DPBA 1EADA 1XL7A 4N72A 3FP0A 3B2SA 5KJVA 5KJSA 2IHWA 1CLAA 3MAEA 4KECA 3U9BA 4JN5A 5FALA 5KJUA 1CIAA 1Q23A 1QCAA 1DPCA 2XHGA 4CLAA 1XMDA 1EAFA 3FOTA 4JN3A 2I9DA 1DPDA 2XR7A 2ZBAA 1EABA 4G2MA 5KJWA 2RKVA 1EACA 1Q9JA 2II5A 3U9FA 2II3A 2JGPA 5T3EA 1E2OA 1L5AA 1XL8A 3B30A 2E1UA 1XMCA 5DU9A 5FANA 1EAEA 4HVMA 2BGHA 2CLAA 3CLAA 4G22A
chains in the Genus database with same CATH superfamily
1Q6XA 1NDFA 4N72A 2H3PA 2IHWA 2FW3A 1Q23A 1QCAA 1XMDA 1EAFA 4EPHA 1NM8A 4G2MA 1NDIA 3U9FA 5T3EA 1L5AA 1XMCA 4HVMA 4KE4A 2FY3A 2VSQA 1EAAA 1NOCB 1PD5A 1T7OA 2E1VA 2E1TA 1C4TA 5DUAA 3MAEA 5FALA 1CIAA 1NDBA 4EP9A 2H4TA 3FOTA 2FYOA 2I9DA 1EABA 2RKVA 2II3A 2DEBA 2JGPA 1E2OA 3B30A 5DU9A 5FANA 1EAEA 2CLAA 1T7QA 5KJTA 3L60A 2RKTA 1SCZA 1S5OA 1DPBA 2FY2A 1XL7A 3FP0A 3B2SA 5KJVA 3U9BA 2RCUA 1DPCA 2ZBAA 1EACA 2II5A 1T7NA 3CLAA 4G22A 4G0BA 4EYWA 2II4A 1EADA 5KJSA 2FY5A 1CLAA 4KECA 5KJUA 2XHGA 4CLAA 2FY4A 1T1UA 4JN3A 1DPDA 2XR7A 5KJWA 1Q9JA 2H3WA 1XL8A 2E1UA 2H3UA 2BGHA 4JN5A
chains in the Genus database with same CATH topology
1Q6XA 1NDFA 4N72A 2H3PA 2IHWA 2FW3A 1Q23A 1QCAA 1XMDA 1EAFA 4EPHA 1NM8A 4G2MA 1NDIA 3U9FA 5T3EA 1L5AA 1XMCA 4HVMA 4KE4A 2FY3A 2VSQA 1EAAA 1NOCB 1PD5A 1T7OA 2E1VA 2E1TA 1C4TA 5DUAA 3MAEA 5FALA 1CIAA 1NDBA 4EP9A 2H4TA 3FOTA 2FYOA 2I9DA 1EABA 2RKVA 2II3A 2JGPA 2DEBA 1E2OA 3B30A 5DU9A 5FANA 1EAEA 2CLAA 1T7QA 5KJTA 3L60A 2RKTA 1SCZA 1S5OA 1DPBA 2FY2A 1XL7A 3FP0A 3B2SA 5KJVA 3U9BA 2RCUA 1DPCA 2ZBAA 1EACA 2II5A 1T7NA 3CLAA 4G22A 4G0BA 4EYWA 2II4A 1EADA 5KJSA 2FY5A 1CLAA 4KECA 5KJUA 2XHGA 4CLAA 2FY4A 1T1UA 4JN3A 1DPDA 2XR7A 5KJWA 1Q9JA 2H3WA 1XL8A 2E1UA 2H3UA 2BGHA 4JN5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G0B A;  5KJT A;  3L60 A;  2RKT A;  4KE4 A;  1SCZ A;  2VSQ A;  1EAA A;  1NOC B;  1PD5 A;  2E1V A;  2E1T A;  1C4T A;  5DUA A;  2II4 A;  1DPB A;  1EAD A;  1XL7 A;  4N72 A;  3FP0 A;  3B2S A;  5KJV A;  5KJS A;  2IHW A;  1CLA A;  3MAE A;  4KEC A;  3U9B A;  4JN5 A;  5FAL A;  5KJU A;  1CIA A;  1Q23 A;  1QCA A;  1DPC A;  2XHG A;  4CLA A;  1XMD A;  1EAF A;  3FOT A;  4JN3 A;  2I9D A;  1DPD A;  2XR7 A;  2ZBA A;  1EAB A;  4G2M A;  5KJW A;  2RKV A;  1EAC A;  1Q9J A;  2II5 A;  3U9F A;  2II3 A;  2JGP A;  5T3E A;  1E2O A;  1L5A A;  1XL8 A;  3B30 A;  2E1U A;  1XMC A;  5DU9 A;  5FAN A;  1EAE A;  4HVM A;  2BGH A;  2CLA A;  3CLA A;  4G22 A; 
#chains in the Genus database with same CATH topology
 1Q6X A;  1NDF A;  4N72 A;  2H3P A;  2IHW A;  2FW3 A;  1Q23 A;  1QCA A;  1XMD A;  1EAF A;  4EPH A;  1NM8 A;  4G2M A;  1NDI A;  3U9F A;  5T3E A;  1L5A A;  1XMC A;  4HVM A;  4KE4 A;  2FY3 A;  2VSQ A;  1EAA A;  1NOC B;  1PD5 A;  1T7O A;  2E1V A;  2E1T A;  1C4T A;  5DUA A;  3MAE A;  5FAL A;  1CIA A;  1NDB A;  4EP9 A;  2H4T A;  3FOT A;  2FYO A;  2I9D A;  1EAB A;  2RKV A;  2II3 A;  2DEB A;  2JGP A;  1E2O A;  3B30 A;  5DU9 A;  5FAN A;  1EAE A;  2CLA A;  1T7Q A;  5KJT A;  3L60 A;  2RKT A;  1SCZ A;  1S5O A;  1DPB A;  2FY2 A;  1XL7 A;  3FP0 A;  3B2S A;  5KJV A;  3U9B A;  2RCU A;  1DPC A;  2ZBA A;  1EAC A;  2II5 A;  1T7N A;  3CLA A;  4G22 A;  4G0B A;  4EYW A;  2II4 A;  1EAD A;  5KJS A;  2FY5 A;  1CLA A;  4KEC A;  5KJU A;  2XHG A;  4CLA A;  2FY4 A;  1T1U A;  4JN3 A;  1DPD A;  2XR7 A;  5KJW A;  1Q9J A;  2H3W A;  1XL8 A;  2E1U A;  2H3U A;  2BGH A;  4JN5 A; 
#chains in the Genus database with same CATH homology
 1Q6X A;  1NDF A;  4N72 A;  2H3P A;  2IHW A;  2FW3 A;  1Q23 A;  1QCA A;  1XMD A;  1EAF A;  4EPH A;  1NM8 A;  4G2M A;  1NDI A;  3U9F A;  5T3E A;  1L5A A;  1XMC A;  4HVM A;  4KE4 A;  2FY3 A;  2VSQ A;  1EAA A;  1NOC B;  1PD5 A;  1T7O A;  2E1V A;  2E1T A;  1C4T A;  5DUA A;  3MAE A;  5FAL A;  1CIA A;  1NDB A;  4EP9 A;  2H4T A;  3FOT A;  2FYO A;  2I9D A;  1EAB A;  2RKV A;  2II3 A;  2JGP A;  2DEB A;  1E2O A;  3B30 A;  5DU9 A;  5FAN A;  1EAE A;  2CLA A;  1T7Q A;  5KJT A;  3L60 A;  2RKT A;  1SCZ A;  1S5O A;  1DPB A;  2FY2 A;  1XL7 A;  3FP0 A;  3B2S A;  5KJV A;  3U9B A;  2RCU A;  1DPC A;  2ZBA A;  1EAC A;  2II5 A;  1T7N A;  3CLA A;  4G22 A;  4G0B A;  4EYW A;  2II4 A;  1EAD A;  5KJS A;  2FY5 A;  1CLA A;  4KEC A;  5KJU A;  2XHG A;  4CLA A;  2FY4 A;  1T1U A;  4JN3 A;  1DPD A;  2XR7 A;  5KJW A;  1Q9J A;  2H3W A;  1XL8 A;  2E1U A;  2H3U A;  2BGH A;  4JN5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...