1QHHC

Structure of dna helicase with adpnp
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
102
structure length
102
Chain Sequence
LFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords PROTEIN (PCRA (SUBUNIT))
publication title DNA binding mediates conformational changes and metal ion coordination in the active site of PcrA helicase.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 40
structure length 102
sequence length 102
ec nomenclature ec 3.6.4.12: DNA helicase.
pdb deposition date 1999-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.486.10 Mainly Alpha Orthogonal Bundle PCRA; domain 4 PCRA; domain 4 1qhhC00
3U44A 3K70C 2IS4A 3PJRA 1PJRA 3K70B 2IS2A 4C30A 2IS1A 5LD2C 2IS6A 1W36C 4C2UA 1QHGA 4CEJA 4CEHA 5LD2B 1W36B 4CEIA 1UAAA 3U4QA 2PJRA 4C2TA 1QHHC 3LFUA
chains in the Genus database with same CATH superfamily
3U44A 3K70C 2IS4A 3PJRA 1PJRA 3K70B 2IS2A 4C30A 2IS1A 5LD2C 2IS6A 1W36C 4C2UA 1QHGA 4CEJA 4CEHA 5LD2B 1W36B 4CEIA 1UAAA 3U4QA 2PJRA 4C2TA 1QHHC 3LFUA
chains in the Genus database with same CATH topology
3U44A 3K70C 2IS4A 3PJRA 1PJRA 3K70B 2IS2A 4C30A 2IS1A 5LD2C 2IS6A 1W36C 4C2UA 1QHGA 4CEJA 4CEHA 5LD2B 1W36B 4CEIA 1UAAA 3U4QA 2PJRA 4C2TA 1QHHC 3LFUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U44 A;  3K70 C;  2IS4 A;  3PJR A;  1PJR A;  3K70 B;  2IS2 A;  4C30 A;  2IS1 A;  5LD2 C;  2IS6 A;  1W36 C;  4C2U A;  1QHG A;  4CEJ A;  4CEH A;  5LD2 B;  1W36 B;  4CEI A;  1UAA A;  3U4Q A;  2PJR A;  4C2T A;  1QHH C;  3LFU A; 
#chains in the Genus database with same CATH topology
 3U44 A;  3K70 C;  2IS4 A;  3PJR A;  1PJR A;  3K70 B;  2IS2 A;  4C30 A;  2IS1 A;  5LD2 C;  2IS6 A;  1W36 C;  4C2U A;  1QHG A;  4CEJ A;  4CEH A;  5LD2 B;  1W36 B;  4CEI A;  1UAA A;  3U4Q A;  2PJR A;  4C2T A;  1QHH C;  3LFU A; 
#chains in the Genus database with same CATH homology
 3U44 A;  3K70 C;  2IS4 A;  3PJR A;  1PJR A;  3K70 B;  2IS2 A;  4C30 A;  2IS1 A;  5LD2 C;  2IS6 A;  1W36 C;  4C2U A;  1QHG A;  4CEJ A;  4CEH A;  5LD2 B;  1W36 B;  4CEI A;  1UAA A;  3U4Q A;  2PJR A;  4C2T A;  1QHH C;  3LFU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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