The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
93
|
sequence length |
303
|
structure length |
303
|
Chain Sequence |
GGDFAVVKAKKSLERRGFGVKRGDKIYLHPLEVVYLQIKGIESFGELEDVLSWAESRMEDFSTYYFVYEDLRDRGNKVKIQGEFLLTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGEQKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLNADREELVKRAREVERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Translation, hydrolase
|
| molecule keywords |
tRNA-intron endonuclease
|
| publication title |
Structure determination of a truncated dimeric splicing endonuclease in pseudo-face-centered space group P2(1)2(1)2.
pubmed doi rcsb |
| source organism |
Archaeoglobus fulgidus
|
| total genus |
93
|
| structure length |
303
|
| sequence length |
303
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.6.1.16: tRNA-intron lyase. |
| pdb deposition date | 2003-09-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01974 | tRNA_int_endo | tRNA intron endonuclease, catalytic C-terminal domain |
| A | PF02778 | tRNA_int_endo_N | tRNA intron endonuclease, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | tRNA intron endonuclease, N-terminal domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease; Chain: A, domain 1 | Trna Endonuclease; Chain: A, domain 1 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease; Chain: A, domain 1 | Trna Endonuclease; Chain: A, domain 1 |
#chains in the Genus database with same CATH superfamily 3P1Y A; 2INB A; 2VLD A; 1ZP7 A; 3IEY A; 1OB8 A; 2OST A; 4QBO A; 3DNX A; 1Y1O A; 3IF0 X; 2ZYZ B; 2WIW A; 3FOV A; 3P1Z A; 4TKK A; 2GJW A; 1RZN A; 2WCW A; 4FZ2 A; 3AJV A; 4QBL A; 1IPI A; 1XMX A; 3IEY B; 2OKF A; 2GW6 A; 2WCZ A; 1T0F A; 4TKD A; 5FDK A; 1A79 A; 1R11 A; 1R0V A; 1HH1 A; 1OB9 A; 2EO0 A; 2FCO A; 2CV8 A; 1Y88 A; 2ZYZ A; 4QBN A; 3P1Z B; 1GEF A; 2WIZ A; 1RLV A; 1F1Z A; 3AJV B; 2WJ0 A; #chains in the Genus database with same CATH topology 2INB A; 3THY B; 2WTU A; 2FWR A; 2W8M A; 2O8E B; 1NNE A; 2WCW A; 4QBL A; 1XMX A; 1OH7 A; 4DA2 A; 2BH2 A; 4G6U A; 3THX A; 2FKH B; 1T0F A; 2IXS A; 1EWQ A; 1GEF A; 1WB9 A; 2O8F A; 1F1Z A; 1W7A A; 2WJ0 A; 1ZP7 A; 3ZLJ A; 1WBD A; 3THX B; 3DNX A; 3K0S A; 1NG9 A; 1Y1O A; 3FOV A; 1OH5 A; 1OH8 A; 2O8F B; 4TKK A; 2GJW A; 1RZN A; 2O8B A; 2FLC A; 1WBB A; 2JJQ A; 2GW6 A; 2FL3 A; 4TKD A; 5FDK A; 1HH1 A; 2ZYZ A; 1R0V A; 2EO0 A; 1Y88 A; 2WIZ A; 2FKC A; 2O8B B; 2VLD A; 3IEY A; 2VS1 A; 1UWV A; 4QBO A; 3IF0 X; 2O8C A; 2ZYZ B; 2WIW A; 3P1Z A; 1FW6 A; 4EV1 A; 3AJV A; 1IPI A; 2O8D A; 3IEY B; 4DAP A; 4G6V A; 2WCZ A; 1OH6 A; 2O8C B; 1A79 A; 1R11 A; 1YNM A; 1OB9 A; 2FCO A; 4DAV A; 2FZ4 A; 2CV8 A; 4QBN A; 3P1Z B; 3THW A; 3BT7 A; 3AJV B; 3P1Y A; 2O8D B; 4E6Z A; 1OB8 A; 2CZR A; 2OST A; 2DBS A; 3THW B; 4FZ2 A; 2Z0R A; 3THY A; 2OKF A; 4LQE A; 2O8E A; 4ZQU A; 1E3M A; 1RLV A; #chains in the Genus database with same CATH homology 3P1Y A; 2INB A; 2VLD A; 1ZP7 A; 3IEY A; 4E6Z A; 1OB8 A; 2CZR A; 2VS1 A; 2OST A; 1UWV A; 2DBS A; 4QBO A; 3DNX A; 1Y1O A; 2W8M A; 3IF0 X; 2ZYZ B; 2WIW A; 3FOV A; 3P1Z A; 4TKK A; 2GJW A; 1RZN A; 2WCW A; 4EV1 A; 4FZ2 A; 3AJV A; 4QBL A; 2Z0R A; 1IPI A; 1XMX A; 2FLC A; 3IEY B; 4DAP A; 4DA2 A; 2BH2 A; 4G6U A; 2OKF A; 4G6V A; 2JJQ A; 2GW6 A; 2WCZ A; 4LQE A; 2FKH B; 1T0F A; 2FL3 A; 4TKD A; 4DAV A; 5FDK A; 1A79 A; 1R11 A; 1R0V A; 1HH1 A; 1OB9 A; 1YNM A; 2EO0 A; 2CV8 A; 1Y88 A; 2FCO A; 2IXS A; 4QBN A; 4ZQU A; 2ZYZ A; 3P1Z B; 3BT7 A; 1GEF A; 2WIZ A; 1RLV A; 1F1Z A; 3AJV B; 2FKC A; 2WJ0 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
