1R5EA

Solution structure of the folded core of pseudomonas syringae effector protein, avrpto
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
105
structure length
105
Chain Sequence
DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQHAMGIHADI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Protein binding
molecule keywords avirulence protein
publication title The solution structure of type III effector protein AvrPto reveals conformational and dynamic features important for plant pathogenesis.
pubmed doi rcsb
source organism Pseudomonas syringae
total genus 35
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2003-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11592 AvrPto Central core of the bacterial effector protein AvrPto
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.140 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 AvrPto 1r5eA01
1R5EA 2QKWA
chains in the Genus database with same CATH superfamily
3ABHA 3HAJA 3O3NB 4JWCA 1UPXA 3RV1A 2RT6A 3I04A 2NCZA 2ZXQA 4JWIA 4FZPA 3CVRA 2F7OA 3CAZA 2QKWA 3T47A 1LQ7A 1TQVA 2ALWA 2LM0A 3CZSA 2YIVX 3KDRA 1R5EA 3DPPA 3EJTA 4AVMA 4R5LA 4AZBA 3SYVA 1R34A 3M3WA 2D4CA 3EJRA 4G6QA 3QE6A 2OZNB 4EZRA 3T46A 2OO2A 3HAHA 3L3PA 5FIGA 3T4AG 2LXYA 1URUA 5KBPA 1ZYLA 3CKDA 2F7QA 4IW0A 4E3CA 3BVUA 4IM0A 3T49A 1SUFA 1TQWA 2Z0OA 2WYHA 4I1QA 4FZOA 3RPMA 3BLBA 4EZTA 2YKTA 1X03A 1TQUA 2YL5A 1GN9A 3LVTA 2V0OA 4F01A 3ACOA 2QFFA 2YI8A 2F1AA 4JNFA 3BUQA 3B51X 3DDFA 3FD9A 2Q13A 3D2FA 4NSWA 3VKHA 2RAKA 3B53X 4UDXX 4R5IA 4R5KA 1TQTA 3SOGA 4HYBA 1E1DA 3O3MB 2C08A 1I4DA 1U00A 2JNKA 1TQSA 2RAJA 2OBLA 4JWDA 3DDGA 3Q0KA 4ATMA 2RAIA 2PMRA 4R5JA 3VEAA 4EZOA 2FYVA 2F18A 4JL9A 2OBMA 3PLTA 4JN4A 3ZEDA 4EZSA 4H8SA 4FM3A 1DKZA 3EJUA 2OW6A 1SU7A 3A98A 2YI9A 3T48A 1E2UA 1DKXA 3OHXM 1WDZA 3OK8A 3KAWA 2JNSA 3D4YA 4FZSA 3UITA 4EZQA 4EZPA 3DX1A 4AKVA 1OA1A 4R5GA 1QWUA 2N3KA 3CZNA 4EZNA 2EX3B 3D52A 3HAIA 4F00A 2F7PA 4BNEA 2YLAA 1I4LA 4DYLA 3DX4A 4IWOA 4M0MA 3OWGA 4IM2A 4AZGA 4E81A 4EZYA 3LLLA 1OA0A 3EJPA 4NQIA 3EJQA 1GNTA 1MJGA 3BVVA 3ER9B 4KIKA 3D4ZA 4EZVA 3QNJA 3EJSA 1HTYA 4EZZA 3D51A 3VEBA 4H6IA 4DCNC 4PO2A 1ZWWA 1X04A 4AZ6A 5FLEX 3BUPA 1Y2OA 4AZHA 3D50A 2YIAA 5C5BA 3GI7A 3I2WA 4JLCA 4HY9A 2YIBA 4EZWA 3KAVA 3C7NA 3I01A 3Q84A 5TKYA 2OW7A 4KIKB 2FICA 4HR1B 3ERCC 3LMFA 3BVXA 3DX2A 3I39X 1E9VA 2KHOA 3BUBA 3B52X 1JQKA 3DYTA 1SU6A 3CV5A 5C5BB 3DX3A 3QWEA 2X3WA 2YLLA 1O7DC 3DPQA 2EWFA 2Z0VA 1W9MA 3F7WA 2WINM 4IWQA 1I4TA 4WPCA 4WPEA 4EZUA 3DX0A 4NPHA 2EFKA 3L3OM 2YL8A 1QWNA 4D8JA 1DKYA 3QNIA 3BVWA 2GA9D 1I49A 2YL6A 2WYIA 2D1LA 4IWPA 3BVTA 1PS3A 2QXLA 3DPOA 3O3OB 2YL9A 1QX1A 2EFLA 2X5CA 1R33A 2Z8YA 4AZCA 2O0I1 2Q12A 4JNEA 4AZ7A 1SU8A 2MI7A 1HWWA 2F7RA 5E84A 2GAFD 3BUIA 3QA8A 4HR1A 4JWEA 1HXKA 4UDYX 4H6HA 2X3XA 4AZ5A 2F1BA 2PY6A 1O7DB 2ND0A 4IM3A 4EZXA 1YWMA 3RV0A 2X3VA 1GNLA 3ER8C 3D2EA 4B9QA 4AZIA 4AZCB 2GF4A 2ND1A 2ELBA 3BUDA 1OAOA 2Z0NA 3G9GA
chains in the Genus database with same CATH topology
1R5EA 2QKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R5E A;  2QKW A; 
#chains in the Genus database with same CATH topology
 3ABH A;  3HAJ A;  3O3N B;  4JWC A;  1UPX A;  3RV1 A;  2RT6 A;  3I04 A;  2NCZ A;  2ZXQ A;  4JWI A;  4FZP A;  3CVR A;  2F7O A;  3CAZ A;  2QKW A;  3T47 A;  1LQ7 A;  1TQV A;  2ALW A;  2LM0 A;  3CZS A;  2YIV X;  3KDR A;  1R5E A;  3DPP A;  3EJT A;  4AVM A;  4R5L A;  4AZB A;  3SYV A;  1R34 A;  3M3W A;  2D4C A;  3EJR A;  4G6Q A;  3QE6 A;  2OZN B;  4EZR A;  3T46 A;  2OO2 A;  3HAH A;  3L3P A;  5FIG A;  3T4A G;  2LXY A;  1URU A;  5KBP A;  1ZYL A;  3CKD A;  2F7Q A;  4IW0 A;  4E3C A;  3BVU A;  4IM0 A;  3T49 A;  1SUF A;  1TQW A;  2Z0O A;  2WYH A;  4I1Q A;  4FZO A;  3RPM A;  3BLB A;  4EZT A;  2YKT A;  1X03 A;  1TQU A;  2YL5 A;  1GN9 A;  3LVT A;  2V0O A;  4F01 A;  3ACO A;  2QFF A;  2YI8 A;  2F1A A;  4JNF A;  3BUQ A;  3B51 X;  3DDF A;  3FD9 A;  2Q13 A;  3D2F A;  4NSW A;  3VKH A;  2RAK A;  3B53 X;  4UDX X;  4R5I A;  4R5K A;  1TQT A;  3SOG A;  4HYB A;  1E1D A;  3O3M B;  2C08 A;  1I4D A;  1U00 A;  2JNK A;  1TQS A;  2RAJ A;  2OBL A;  4JWD A;  3DDG A;  3Q0K A;  4ATM A;  2RAI A;  2PMR A;  4R5J A;  3VEA A;  4EZO A;  2FYV A;  2F18 A;  4JL9 A;  2OBM A;  3PLT A;  4JN4 A;  3ZED A;  4EZS A;  4H8S A;  4FM3 A;  1DKZ A;  3EJU A;  2OW6 A;  1SU7 A;  3A98 A;  2YI9 A;  3T48 A;  1E2U A;  1DKX A;  3OHX M;  1WDZ A;  3OK8 A;  3KAW A;  2JNS A;  3D4Y A;  4FZS A;  3UIT A;  4EZQ A;  4EZP A;  3DX1 A;  4AKV A;  1OA1 A;  4R5G A;  1QWU A;  2N3K A;  3CZN A;  4EZN A;  2EX3 B;  3D52 A;  3HAI A;  4F00 A;  2F7P A;  4BNE A;  2YLA A;  1I4L A;  4DYL A;  3DX4 A;  4IWO A;  4M0M A;  3OWG A;  4IM2 A;  4AZG A;  4E81 A;  4EZY A;  3LLL A;  1OA0 A;  3EJP A;  4NQI A;  3EJQ A;  1GNT A;  1MJG A;  3BVV A;  3ER9 B;  4KIK A;  3D4Z A;  4EZV A;  3QNJ A;  3EJS A;  1HTY A;  4EZZ A;  3D51 A;  3VEB A;  4H6I A;  4DCN C;  4PO2 A;  1ZWW A;  1X04 A;  4AZ6 A;  5FLE X;  3BUP A;  1Y2O A;  4AZH A;  3D50 A;  2YIA A;  5C5B A;  3GI7 A;  3I2W A;  4JLC A;  4HY9 A;  2YIB A;  4EZW A;  3KAV A;  3C7N A;  3I01 A;  3Q84 A;  5TKY A;  2OW7 A;  4KIK B;  2FIC A;  4HR1 B;  3ERC C;  3LMF A;  3BVX A;  3DX2 A;  3I39 X;  1E9V A;  2KHO A;  3BUB A;  3B52 X;  1JQK A;  3DYT A;  1SU6 A;  3CV5 A;  5C5B B;  3DX3 A;  3QWE A;  2X3W A;  2YLL A;  1O7D C;  3DPQ A;  2EWF A;  2Z0V A;  1W9M A;  3F7W A;  2WIN M;  4IWQ A;  1I4T A;  4WPC A;  4WPE A;  4EZU A;  3DX0 A;  4NPH A;  2EFK A;  3L3O M;  2YL8 A;  1QWN A;  4D8J A;  1DKY A;  3QNI A;  3BVW A;  2GA9 D;  1I49 A;  2YL6 A;  2WYI A;  2D1L A;  4IWP A;  3BVT A;  1PS3 A;  2QXL A;  3DPO A;  3O3O B;  2YL9 A;  1QX1 A;  2EFL A;  2X5C A;  1R33 A;  2Z8Y A;  4AZC A;  2O0I 1;  2Q12 A;  4JNE A;  4AZ7 A;  1SU8 A;  2MI7 A;  1HWW A;  2F7R A;  5E84 A;  2GAF D;  3BUI A;  3QA8 A;  4HR1 A;  4JWE A;  1HXK A;  4UDY X;  4H6H A;  2X3X A;  4AZ5 A;  2F1B A;  2PY6 A;  1O7D B;  2ND0 A;  4IM3 A;  4EZX A;  1YWM A;  3RV0 A;  2X3V A;  1GNL A;  3ER8 C;  3D2E A;  4B9Q A;  4AZI A;  4AZC B;  2GF4 A;  2ND1 A;  2ELB A;  3BUD A;  1OAO A;  2Z0N A;  3G9G A; 
#chains in the Genus database with same CATH homology
 1R5E A;  2QKW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...