The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
123
|
sequence length |
320
|
structure length |
320
|
Chain Sequence |
DDFAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKAAKGLDQPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVVC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| molecule keywords |
V-type ATP synthase subunit C
|
| publication title |
Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase.
pubmed doi rcsb |
| source organism |
Thermus thermophilus
|
| total genus |
123
|
| structure length |
320
|
| sequence length |
320
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
3.6.3.14: Transferred entry: 7.1.2.2. |
| pdb deposition date | 2003-10-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01992 | vATP-synt_AC39 | ATP synthase (C/AC39) subunit |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Topoisomerase I; Chain A, domain 4 | Topoisomerase I; Chain A, domain 4 | ||
| Mainly Alpha | Up-down Bundle | V-type ATP synthase subunit C fold | V-type ATP synthase subunit C domain | ||
| Mainly Alpha | Up-down Bundle | V-type ATP synthase subunit C fold | V-type ATP synthase subunit C domain |
#chains in the Genus database with same CATH superfamily 1R5Z A; 1V9M A; #chains in the Genus database with same CATH topology 1EK8 A; 1WQG A; 1TWH A; 3GTJ A; 1V9M A; 3GTQ A; 4JLR C; 2F4Q A; 1I50 A; 1IW7 D; 1SMY D; 1A36 A; 3DU5 A; 2A6H D; 1SEU A; 4FXD A; 1WQH A; 1I3Q A; 5C9H A; 2WB1 A; 2QQP A; 1TWF A; 4C2M A; 2YU9 A; 1EJ9 A; 1RRJ A; 2WAQ A; 3GTL A; 4D3Y A; 1TWA A; 3CQZ A; 3DU6 A; 1R49 A; 4O26 A; 2NVX A; 2E2I A; 4FYD A; 4NOM A; 1A31 A; 1DD5 A; 1Y69 8; 1R9T A; 4KB2 A; 2B9S B; 2E2H A; 1ISE A; 1WQF A; 4KC6 A; 2NVY A; 5JSN B; 2A69 D; 1GE9 A; 3K58 A; 1T8I A; 1K4S A; 4GFQ A; 2BE5 D; 3GTG A; 5JSB B; 4QIW A; 4AN8 A; 4KAW X; 1MIU A; 4Q5G A; 3K5O A; 3H0G A; 2PMZ A; 4Q5V A; 4KB4 A; 3K5L A; 5MLC 9; 2R4G A; 1K83 A; 2A68 D; 4L8I A; 1I6V D; 1TWG A; 1SFO A; 2O5J D; 1TWC A; 1ZYR D; 4KDD A; 1TL8 A; 3M4A A; 4NOL A; 4FGU A; 3GTP A; 3MAQ A; 1RR8 C; 4H3T A; 3GTM A; 1WCM A; 5CQG A; 4QCL A; 2VUM A; 2B63 A; 1EH1 A; 2A6E D; 3P9A A; 3GTK A; 3K5N A; 4NOK A; 1LPQ A; 2R92 A; 2R7Z A; 2JA7 A; 1TGO A; 1K4T A; 3K57 A; 2CW0 D; 3HKZ A; 3KYL A; 1R5Z A; 3WVO A; 4EJ3 A; 1SC7 A; 1IS1 A; 3LF9 A; 1Y1W A; 1OHF A; 3K59 A; 4F3E A; 2Y0S A; 1Y1V A; 3FKI A; 1NH3 A; 1YNJ D; 3IAY A; 4OYD B; 3K5M A; 2JA5 A; 1Q8I A; 4IP8 A; 4AHC A; 3SJR A; 2JA6 A; 3GTO A; 4D3Z A; 4IP9 A; 4LMO A; 3LHP S; 4AYB A; 1A35 A; 1YNN D; 2R93 A; 1HQM D; 3S6P A; #chains in the Genus database with same CATH homology 1EK8 A; 1WQG A; 1TWH A; 3GTJ A; 1V9M A; 3GTQ A; 4JLR C; 2F4Q A; 1I50 A; 1IW7 D; 1SMY D; 1A36 A; 3DU5 A; 2A6H D; 1SEU A; 4FXD A; 1WQH A; 1I3Q A; 5C9H A; 2WB1 A; 1TWF A; 4C2M A; 2YU9 A; 1EJ9 A; 1RRJ A; 2WAQ A; 3GTL A; 4D3Y A; 1TWA A; 3CQZ A; 3DU6 A; 1R49 A; 4O26 A; 2NVX A; 2E2I A; 4FYD A; 4NOM A; 1A31 A; 1DD5 A; 1Y69 8; 1R9T A; 4KB2 A; 2B9S B; 2E2H A; 1ISE A; 1WQF A; 4KC6 A; 2NVY A; 5JSN B; 2A69 D; 1GE9 A; 3K58 A; 1T8I A; 1K4S A; 4GFQ A; 2BE5 D; 3GTG A; 5JSB B; 4QIW A; 4AN8 A; 4KAW X; 1MIU A; 4Q5G A; 3K5O A; 3H0G A; 2PMZ A; 4Q5V A; 4KB4 A; 3K5L A; 5MLC 9; 2R4G A; 1K83 A; 2A68 D; 4L8I A; 1I6V D; 1TWG A; 1SFO A; 2O5J D; 1TWC A; 1ZYR D; 4KDD A; 1TL8 A; 3M4A A; 4NOL A; 4FGU A; 3GTP A; 3MAQ A; 1RR8 C; 4H3T A; 3GTM A; 1WCM A; 5CQG A; 4QCL A; 2VUM A; 2B63 A; 1EH1 A; 2A6E D; 3P9A A; 3GTK A; 3K5N A; 4NOK A; 1LPQ A; 2R92 A; 2R7Z A; 2JA7 A; 1TGO A; 1K4T A; 3K57 A; 2CW0 D; 3HKZ A; 3KYL A; 1R5Z A; 3WVO A; 4EJ3 A; 1SC7 A; 1IS1 A; 3LF9 A; 1Y1W A; 3K59 A; 4F3E A; 2Y0S A; 1Y1V A; 3FKI A; 1NH3 A; 1YNJ D; 3IAY A; 4OYD B; 3K5M A; 2JA5 A; 1Q8I A; 4IP8 A; 4AHC A; 3SJR A; 2JA6 A; 3GTO A; 4D3Z A; 4IP9 A; 4LMO A; 3LHP S; 4AYB A; 1A35 A; 1YNN D; 2R93 A; 1HQM D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
