1RE5A

Crystal structure of 3-carboxy-cis,cis-muconate lactonizing enzyme from pseudomonas putida
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
448
structure length
438
Chain Sequence
NQLFDAYFTAPAMREIFSDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQARVWVARAVSEHQRFTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 3-carboxy-cis,cis-muconate cycloisomerase
publication title Crystal Structure of 3-Carboxy-cis,cis-muconate Lactonizing Enzyme from Pseudomonas putida, a Fumarase Class II Type Cycloisomerase: Enzyme Evolution in Parallel Pathways.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 157
structure length 438
sequence length 448
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1re5A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1re5A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1re5A02
4C5RA 4NSLA 1KQ7A 1FURA 4CQ5A 3R6VA 2O78A 1YISA 2RJRA 1RE5A 1HY1A 3KDYA 1TJUA 3TV2A 4HGVA 1B8FA 2PTQA 1W27A 5EYVA 4APAA 1EB4A 3RD8A 2O7EA 4C5SA 4ADMA 4C6GA 1GK2A 3OCEA 3GTDA 1AUWA 4FFXA 1K7WA 1GK3A 2QGAB 2QVEA 1C3UA 1HY0A 1Q5NA 4MX2A 3QBPA 2J91A 2HVGA 1TJWA 3R6QA 1T6JA 1GKJA 4APBA 1FUOA 3RRPA 1JSWA 2OHYA 1YFEA 2PTRA 3NZ4A 3NO9A 4V2RA 2NYNA 2PTSA 4C5UA 3UNVA 4NLEA 1DOFA 2PFMA 2YIIA 4BAAA 2X75A 1DCNA 2O7BA 1T6PA 5D6BA 3E04A 4EEIA 1VDKA 3KDZA 2NYFA 1YFMA 3C8TA 1I0AA 4EFCA 1FUQA 1C3CA 1TJ7A 5F91A 4ADLA 3BHGA 3R6YA 2O7FA 2FUSA 5HW2A 2O6YA 2O7DA 4FLCA 5EYTA 1J3UA 1U16A 4V2QA 3GZHA 1K62A 2E9FA 1TJVA 3CZOA 1Y2MA 1U15A 1FUPA 1GKMA 2RJSA 5F92A 2VD6A 3OCFA 1XWOA 4BABA
chains in the Genus database with same CATH superfamily
2JAUA 4C5RA 4NSLA 1KQ7A 1FURA 4CQ5A 2JARA 3R6VA 2O78A 3U13A 2D27A 1XLYA 1YISA 2RJRA 1RE5A 1HY1A 3KDYA 1TJUA 1T9HA 3TV2A 4HGVA 4IQJM 1B8FA 2PTQA 5H8WA 1W27A 4L6CA 5EYVA 4APAA 2RCNA 1EB4A 3RD8A 2O7EA 4C5SA 4ADMA 4C6GA 1GK2A 3OCEA 3F4RA 3GTDA 3BWVA 1AUWA 4MUMA 4FFXA 1K7WA 1GK3A 2QGAB 2QVEA 1C3UA 1HY0A 1Q5NA 4MX2A 3QBPA 2J91A 1Z4JA 2HVGA 1TJWA 3R6QA 2VSFA 4MWOA 3F4TA 4L6AA 1T6JA 1GKJA 4APBA 1FUOA 3RRPA 1JSWA 2OHYA 3CRW1 1YFEA 3CI0K 2PTRA 3NZ4A 3NO9A 4V2RA 2NYNA 2PTSA 4NFLA 4C5UA 4WNLA 4L57A 1XL8A 3UNVA 4NLEA 4E88A 1DOFA 2PFMA 1IW7D 2YIIA 4BAAA 2X75A 2JAWA 1DCNA 1Z4LA 2O7BA 1T6PA 5D6BA 3E04A 2YV5A 2I7DA 4EEIA 1Q91A 1VDKA 3U19A 2D28C 3KDZA 2NYFA 1YFMA 3C8TA 1I0AA 1Z4PX 4EFCA 2FENA 1XMCA 1FUQA 5M0IA 1C3CA 1TJ7A 5F91A 4ADLA 3BHGA 1Z4MA 3R6YA 2O7FA 1U0LA 4YIHA 2FUSA 4YIKA 1XMDA 5HW2A 2O6YA 2O7DA 2JAOA 1XL7A 4FLCA 5EYTA 1Z4QA 1J3UA 1U16A 4V2QA 3GZHA 2FELA 1K62A 1Z4KA 2E9FA 5M0JA 1MH9A 4A15A 1TJVA 3F4SA 3CZOA 1Y2MA 1U15A 1FUPA 3CRVA 1GKMA 2RJSA 1Q92A 5F92A 1Z4IA 2VD6A 3OCFA 1XWOA 2VL7A 4BABA
chains in the Genus database with same CATH topology
4C5RA 4NSLA 1KQ7A 1FURA 4CQ5A 3R6VA 2O78A 1YISA 2RJRA 1RE5A 1HY1A 3KDYA 1TJUA 3TV2A 4HGVA 1B8FA 2PTQA 1W27A 5EYVA 4APAA 1EB4A 3RD8A 2O7EA 4C5SA 4ADMA 4C6GA 1GK2A 3OCEA 3GTDA 1AUWA 4FFXA 1K7WA 1GK3A 2QGAB 2QVEA 1C3UA 1HY0A 1Q5NA 4MX2A 3QBPA 2J91A 2HVGA 1TJWA 3R6QA 1T6JA 1GKJA 4APBA 1FUOA 3RRPA 1JSWA 2OHYA 1YFEA 2PTRA 3NZ4A 3NO9A 4V2RA 2NYNA 2PTSA 4C5UA 3UNVA 4NLEA 1DOFA 2PFMA 2YIIA 4BAAA 2X75A 1DCNA 2O7BA 1T6PA 5D6BA 3E04A 4EEIA 1VDKA 3KDZA 2NYFA 1YFMA 3C8TA 1I0AA 4EFCA 1FUQA 1C3CA 1TJ7A 5F91A 4ADLA 3BHGA 3R6YA 2O7FA 2FUSA 5HW2A 2O6YA 2O7DA 4FLCA 5EYTA 1J3UA 1U16A 4V2QA 3GZHA 1K62A 2E9FA 1TJVA 3CZOA 1Y2MA 1U15A 1FUPA 1GKMA 2RJSA 5F92A 2VD6A 3OCFA 1XWOA 4BABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C5R A;  4NSL A;  1KQ7 A;  1FUR A;  4CQ5 A;  3R6V A;  2O78 A;  1YIS A;  2RJR A;  1RE5 A;  1HY1 A;  3KDY A;  1TJU A;  3TV2 A;  4HGV A;  1B8F A;  2PTQ A;  1W27 A;  5EYV A;  4APA A;  1EB4 A;  3RD8 A;  2O7E A;  4C5S A;  4ADM A;  4C6G A;  1GK2 A;  3OCE A;  3GTD A;  1AUW A;  4FFX A;  1K7W A;  1GK3 A;  2QGA B;  2QVE A;  1C3U A;  1HY0 A;  1Q5N A;  4MX2 A;  3QBP A;  2J91 A;  2HVG A;  1TJW A;  3R6Q A;  1T6J A;  1GKJ A;  4APB A;  1FUO A;  3RRP A;  1JSW A;  2OHY A;  1YFE A;  2PTR A;  3NZ4 A;  3NO9 A;  4V2R A;  2NYN A;  2PTS A;  4C5U A;  3UNV A;  4NLE A;  1DOF A;  2PFM A;  2YII A;  4BAA A;  2X75 A;  1DCN A;  2O7B A;  1T6P A;  5D6B A;  3E04 A;  4EEI A;  1VDK A;  3KDZ A;  2NYF A;  1YFM A;  3C8T A;  1I0A A;  4EFC A;  1FUQ A;  1C3C A;  1TJ7 A;  5F91 A;  4ADL A;  3BHG A;  3R6Y A;  2O7F A;  2FUS A;  5HW2 A;  2O6Y A;  2O7D A;  4FLC A;  5EYT A;  1J3U A;  1U16 A;  4V2Q A;  3GZH A;  1K62 A;  2E9F A;  1TJV A;  3CZO A;  1Y2M A;  1U15 A;  1FUP A;  1GKM A;  2RJS A;  5F92 A;  2VD6 A;  3OCF A;  1XWO A;  4BAB A; 
#chains in the Genus database with same CATH topology
 2JAU A;  4C5R A;  4NSL A;  1KQ7 A;  1FUR A;  4CQ5 A;  2JAR A;  3R6V A;  2O78 A;  3U13 A;  2D27 A;  1XLY A;  1YIS A;  2RJR A;  1RE5 A;  1HY1 A;  3KDY A;  1TJU A;  1T9H A;  3TV2 A;  4HGV A;  4IQJ M;  1B8F A;  2PTQ A;  5H8W A;  1W27 A;  4L6C A;  5EYV A;  4APA A;  2RCN A;  1EB4 A;  3RD8 A;  2O7E A;  4C5S A;  4ADM A;  4C6G A;  1GK2 A;  3OCE A;  3F4R A;  3GTD A;  3BWV A;  1AUW A;  4MUM A;  4FFX A;  1K7W A;  1GK3 A;  2QGA B;  2QVE A;  1C3U A;  1HY0 A;  1Q5N A;  4MX2 A;  3QBP A;  2J91 A;  1Z4J A;  2HVG A;  1TJW A;  3R6Q A;  2VSF A;  4MWO A;  3F4T A;  4L6A A;  1T6J A;  1GKJ A;  4APB A;  1FUO A;  3RRP A;  1JSW A;  2OHY A;  3CRW 1;  1YFE A;  3CI0 K;  2PTR A;  3NZ4 A;  3NO9 A;  4V2R A;  2NYN A;  2PTS A;  4NFL A;  4C5U A;  4WNL A;  4L57 A;  1XL8 A;  3UNV A;  4NLE A;  4E88 A;  1DOF A;  2PFM A;  1IW7 D;  2YII A;  4BAA A;  2X75 A;  2JAW A;  1DCN A;  1Z4L A;  2O7B A;  1T6P A;  5D6B A;  3E04 A;  2YV5 A;  2I7D A;  4EEI A;  1Q91 A;  1VDK A;  3U19 A;  2D28 C;  3KDZ A;  2NYF A;  1YFM A;  3C8T A;  1I0A A;  1Z4P X;  4EFC A;  2FEN A;  1XMC A;  1FUQ A;  5M0I A;  1C3C A;  1TJ7 A;  5F91 A;  4ADL A;  3BHG A;  1Z4M A;  3R6Y A;  2O7F A;  1U0L A;  4YIH A;  2FUS A;  4YIK A;  1XMD A;  5HW2 A;  2O6Y A;  2O7D A;  2JAO A;  1XL7 A;  4FLC A;  5EYT A;  1Z4Q A;  1J3U A;  1U16 A;  4V2Q A;  3GZH A;  2FEL A;  1K62 A;  1Z4K A;  2E9F A;  5M0J A;  1MH9 A;  4A15 A;  1TJV A;  3F4S A;  3CZO A;  1Y2M A;  1U15 A;  1FUP A;  3CRV A;  1GKM A;  2RJS A;  1Q92 A;  5F92 A;  1Z4I A;  2VD6 A;  3OCF A;  1XWO A;  2VL7 A;  4BAB A; 
#chains in the Genus database with same CATH homology
 4C5R A;  4NSL A;  1KQ7 A;  1FUR A;  4CQ5 A;  3R6V A;  2O78 A;  1YIS A;  2RJR A;  1RE5 A;  1HY1 A;  3KDY A;  1TJU A;  3TV2 A;  4HGV A;  1B8F A;  2PTQ A;  1W27 A;  5EYV A;  4APA A;  1EB4 A;  3RD8 A;  2O7E A;  4C5S A;  4ADM A;  4C6G A;  1GK2 A;  3OCE A;  3GTD A;  1AUW A;  4FFX A;  1K7W A;  1GK3 A;  2QGA B;  2QVE A;  1C3U A;  1HY0 A;  1Q5N A;  4MX2 A;  3QBP A;  2J91 A;  2HVG A;  1TJW A;  3R6Q A;  1T6J A;  1GKJ A;  4APB A;  1FUO A;  3RRP A;  1JSW A;  2OHY A;  1YFE A;  2PTR A;  3NZ4 A;  3NO9 A;  4V2R A;  2NYN A;  2PTS A;  4C5U A;  3UNV A;  4NLE A;  1DOF A;  2PFM A;  2YII A;  4BAA A;  2X75 A;  1DCN A;  2O7B A;  1T6P A;  5D6B A;  3E04 A;  4EEI A;  1VDK A;  3KDZ A;  2NYF A;  1YFM A;  3C8T A;  1I0A A;  4EFC A;  1FUQ A;  1C3C A;  1TJ7 A;  5F91 A;  4ADL A;  3BHG A;  3R6Y A;  2O7F A;  2FUS A;  5HW2 A;  2O6Y A;  2O7D A;  4FLC A;  5EYT A;  1J3U A;  1U16 A;  4V2Q A;  3GZH A;  1K62 A;  2E9F A;  1TJV A;  3CZO A;  1Y2M A;  1U15 A;  1FUP A;  1GKM A;  2RJS A;  5F92 A;  2VD6 A;  3OCF A;  1XWO A;  4BAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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