1RFHA

Solution structure of the c1 domain of nore1, a novel ras effector
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
59
structure length
59
Chain Sequence
PRVLAERGEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQLDCR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
molecule keywords Ras association (RalGDS/AF-6) domain family 5
publication title The solution structure of C1 domain of Nore1
rcsb
source organism Mus musculus
total genus 8
structure length 59
sequence length 59
ec nomenclature
pdb deposition date 2003-11-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.20 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1rfhA01
1Y8FA 4UXHA 5FUYA 2QQEA 4L9MA 3KY9A 4UXIA 1XBTA 2B8TA 2ENNA 3BJIA 2ROWA 4FKDA 2VRWB 2J9RA 2ORVA 4UXJA 3E2IA 2ORWA 1W4RA 1PTRA 2QPOA 1FARA 1KBFA 3UGDA 1R79A 3UEYA 3UFFA 3CXLA 2J87A 2ENZA 2FNFX 2YUUA 1PTQA 3UGIA 1TBNA 2QQ0A 2UZ3A 2JA1A 3UGLA 5FUVA 1RFHA 3UEJA 4B6DA 2GVIA 1KBEA 1TBOA 5FUXA 5FUWA 1XA6A 2DB6A 1FAQA 2ELIA 1XX6A 2WVJA 2E73A
chains in the Genus database with same CATH superfamily
2X52A 2ARPF 3E59A 3VDPA 3TJQA 1CGII 1Q9BA 2DIPA 3FSXA 4SGBI 4UXIA 2KCXA 1M8BA 1DS3I 2N71A 2QQDA 2SGDI 2VRWB 3QWPA 1ULMA 1Z7KB 3PDNA 2QPOA 1SGQI 1R0RI 3D00A 1R79A 3UEYA 1CGJI 3UFFA 2V1CA 1OMTA 5E3QA 2RC4A 2GKTI 1UVFA 3SGQI 4DNCA 5JHWC 3R5DA 2QQ0A 1FY7A 2UZ3A 2ERWA 1WGTA 3UEJA 1SGRI 5FUWA 2LUYA 2KMRA 2NU2I 1VDDA 2XRCA 5CCMA 4E1PA 2E73A 3BJIA 5FUYA 1WTJA 1P9ZA 3R5AA 1V1IA 3TO6A 3KY9A 1CSOI 1PJUA 1YU6C 3SEKC 1K7VA 1XBTA 3VE5A 1DS2I 2KMOA 2M5XA 1N13A 1Z2IA 2N52A 4WP4A 1LR7A 1OMUA 2B0UC 2ORVA 4OVOA 1MJBA 5EX0A 1HEVA 1FARA 4GI3C 3UGDA 2JZMA 2UVOA 1TIHA 2J87A 2FNFX 1LR9A 2WCYA 2CWGA 1Y1BA 1OYVI 1TURA 2SGEI 1MJ9A 3UGIA 5HQ8A 1CT0I 2W0TA 5FUVA 1IY5A 3TO9A 3TOBA 2GVIA 2NU0I 1TBOA 1HPTA 3OVOA 2N1AB 2DB6A 2LEOA 1IW4A 3QAHA 2RIJA 1K7TA 2CWHA 2ELIA 2JW6A 1X4SA 2SGPI 1Y8FA 2JXDA 2OVOA 2V1CC 3FSYA 1LR8A 1ULKA 3OXFA 4UXHA 1W3SA 4L9MA 5DAEA 3OL0A 3RU0A 4JCVE 1SGYI 5EX3A 2SGQI 2GKVA 2KMPA 2NU1I 2ROWA 1WGCA 2J9RA 1M8CA 3E2IA 4UXJA 5E3PA 2CJSC 1W4RA 1NUBA 1PTRA 1Y1CA 3TO7A 2SGFI 1TUSA 1NXUA 1K7UA 2CWFA 2PQ8A 3B4VC 1OVOA 3CXLA 2L7XA 2OD1A 2Y0MA 2YUUA 1P9GA 1ULNA 2WGCA 1CHOI 1TOTA 1SGEI 1HDLA 1KMAA 4HGUA 1KBEA 1MJAA 2BUSA 4A24A 5CCLA 1FAQA 5J8CA 2YQPA 3MEKA 1SGDI 1IY6A 2LB7A 3HH2C 1UUCA 2E5RA 2JYYA 2A20A 2K9HA 2QQEA 5HI7A 1U5KA 2OU2A 1PCEA 2B8TA 2ENNA 4FKDA 1TBRR 5E3RA 2OZUA 3QTLD 2KMQA 2ORWA 2QQCA 2X3TA 1CE3A 2GKRI 2ODDA 5J8FA 1AN1I 1KBFA 1V1HA 3OXGA 1S20A 1SGPI 7WGAA 2ENZA 2NU4I 1SGNI 1BUSA 4E1RA 1CT2I 1MT1A 1PPFI 1PTQA 1TGSI 2N17A 3R5BA 4MPIA 1UVGA 1TBNA 2GIVA 3OXLA 2JA1A 3TOAA 2DKVA 3SGBI 1CT4I 1RFHA 1BMOA 3UGLA 3FC3A 1WKXA 2P6AC 4B6DA 2NU3I 3GOXA 1H0ZA 1YTPA 2V53A 1X74A 1HJAI 1XA6A 1TBQR 2F3CI 5FUXA 3UOEA 3VDUA 1FYBA 1UHAA 4AMLA 9WGAA 3R5CA 1XX6A 2WVJA 2L8EA
chains in the Genus database with same CATH topology
2ARPF 3E59A 3VDPA 3TJQA 1CGII 2DIPA 4SGBI 4UXIA 2KCXA 1M8BA 1DS3I 2N71A 2QQDA 2SGDI 2VRWB 3QWPA 1Z7KB 3PDNA 2QPOA 1SGQI 1R0RI 3D00A 1R79A 3UEYA 1CGJI 3UFFA 2V1CA 1OMTA 2GKTI 1UVFA 3SGQI 5JHWC 2QQ0A 2UZ3A 2ERWA 3UEJA 1SGRI 5FUWA 2LUYA 2KMRA 2NU2I 1VDDA 2XRCA 5CCMA 4E1PA 2E73A 3BJIA 5FUYA 1V1IA 3KY9A 1CSOI 1PJUA 1YU6C 3SEKC 1XBTA 3VE5A 1DS2I 2KMOA 2M5XA 1N13A 2N52A 1LR7A 1OMUA 2B0UC 2ORVA 4OVOA 5EX0A 1FARA 4GI3C 3UGDA 2JZMA 1TIHA 2J87A 2FNFX 1LR9A 2WCYA 1Y1BA 1OYVI 1TURA 2SGEI 3UGIA 5HQ8A 1CT0I 2W0TA 5FUVA 1IY5A 2GVIA 2NU0I 1TBOA 1HPTA 3OVOA 2N1AB 2DB6A 2LEOA 1IW4A 2ELIA 2JW6A 2SGPI 1X4SA 1Y8FA 2JXDA 2OVOA 2V1CC 3OXFA 1LR8A 4UXHA 1W3SA 4L9MA 5DAEA 3OL0A 3RU0A 4JCVE 1SGYI 5EX3A 2SGQI 2GKVA 2KMPA 2NU1I 2ROWA 2J9RA 1M8CA 3E2IA 4UXJA 2CJSC 1W4RA 1NUBA 1PTRA 1Y1CA 2SGFI 1TUSA 3B4VC 1OVOA 3CXLA 2L7XA 2OD1A 2YUUA 1CHOI 1TOTA 1SGEI 1HDLA 1KMAA 4HGUA 1KBEA 2BUSA 4A24A 5CCLA 1FAQA 2YQPA 3MEKA 1SGDI 1IY6A 3HH2C 1UUCA 2E5RA 2JYYA 2A20A 2K9HA 2QQEA 5HI7A 1U5KA 1PCEA 2B8TA 2ENNA 4FKDA 1TBRR 3QTLD 2KMQA 2ORWA 2QQCA 1CE3A 2GKRI 2ODDA 1KBFA 1AN1I 1V1HA 3OXGA 1SGPI 2ENZA 2NU4I 1BUSA 4E1RA 1CT2I 1MT1A 1PPFI 1PTQA 1TGSI 2N17A 1UVGA 1TBNA 3OXLA 2JA1A 3UGLA 3SGBI 1CT4I 1RFHA 1BMOA 3FC3A 2P6AC 4B6DA 2NU3I 3GOXA 1H0ZA 1YTPA 2V53A 1X74A 1HJAI 1XA6A 1TBQR 2F3CI 5FUXA 3VDUA 1FYBA 1SGNI 1XX6A 2WVJA 2L8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y8F A;  4UXH A;  5FUY A;  2QQE A;  4L9M A;  3KY9 A;  4UXI A;  1XBT A;  2B8T A;  2ENN A;  3BJI A;  2ROW A;  4FKD A;  2VRW B;  2J9R A;  2ORV A;  4UXJ A;  3E2I A;  2ORW A;  1W4R A;  1PTR A;  2QPO A;  1FAR A;  1KBF A;  3UGD A;  1R79 A;  3UEY A;  3UFF A;  3CXL A;  2J87 A;  2ENZ A;  2FNF X;  2YUU A;  1PTQ A;  3UGI A;  1TBN A;  2QQ0 A;  2UZ3 A;  2JA1 A;  3UGL A;  5FUV A;  1RFH A;  3UEJ A;  4B6D A;  2GVI A;  1KBE A;  1TBO A;  5FUX A;  5FUW A;  1XA6 A;  2DB6 A;  1FAQ A;  2ELI A;  1XX6 A;  2WVJ A;  2E73 A; 
#chains in the Genus database with same CATH topology
 2X52 A;  2ARP F;  3E59 A;  3VDP A;  3TJQ A;  1CGI I;  1Q9B A;  2DIP A;  3FSX A;  4SGB I;  4UXI A;  2KCX A;  1M8B A;  1DS3 I;  2N71 A;  2QQD A;  2SGD I;  2VRW B;  3QWP A;  1ULM A;  1Z7K B;  3PDN A;  2QPO A;  1SGQ I;  1R0R I;  3D00 A;  1R79 A;  3UEY A;  1CGJ I;  3UFF A;  2V1C A;  1OMT A;  5E3Q A;  2RC4 A;  2GKT I;  1UVF A;  3SGQ I;  4DNC A;  5JHW C;  3R5D A;  2QQ0 A;  1FY7 A;  2UZ3 A;  2ERW A;  1WGT A;  3UEJ A;  1SGR I;  5FUW A;  2LUY A;  2KMR A;  2NU2 I;  1VDD A;  2XRC A;  5CCM A;  4E1P A;  2E73 A;  3BJI A;  5FUY A;  1WTJ A;  1P9Z A;  3R5A A;  1V1I A;  3TO6 A;  3KY9 A;  1CSO I;  1PJU A;  1YU6 C;  3SEK C;  1K7V A;  1XBT A;  3VE5 A;  1DS2 I;  2KMO A;  2M5X A;  1N13 A;  1Z2I A;  2N52 A;  4WP4 A;  1LR7 A;  1OMU A;  2B0U C;  2ORV A;  4OVO A;  1MJB A;  5EX0 A;  1HEV A;  1FAR A;  4GI3 C;  3UGD A;  2JZM A;  2UVO A;  1TIH A;  2J87 A;  2FNF X;  1LR9 A;  2WCY A;  2CWG A;  1Y1B A;  1OYV I;  1TUR A;  2SGE I;  1MJ9 A;  3UGI A;  5HQ8 A;  1CT0 I;  2W0T A;  5FUV A;  1IY5 A;  3TO9 A;  3TOB A;  2GVI A;  2NU0 I;  1TBO A;  1HPT A;  3OVO A;  2N1A B;  2DB6 A;  2LEO A;  1IW4 A;  3QAH A;  2RIJ A;  1K7T A;  2CWH A;  2ELI A;  2JW6 A;  1X4S A;  2SGP I;  1Y8F A;  2JXD A;  2OVO A;  2V1C C;  3FSY A;  1LR8 A;  1ULK A;  3OXF A;  4UXH A;  1W3S A;  4L9M A;  5DAE A;  3OL0 A;  3RU0 A;  4JCV E;  1SGY I;  5EX3 A;  2SGQ I;  2GKV A;  2KMP A;  2NU1 I;  2ROW A;  1WGC A;  2J9R A;  1M8C A;  3E2I A;  4UXJ A;  5E3P A;  2CJS C;  1W4R A;  1NUB A;  1PTR A;  1Y1C A;  3TO7 A;  2SGF I;  1TUS A;  1NXU A;  1K7U A;  2CWF A;  2PQ8 A;  3B4V C;  1OVO A;  3CXL A;  2L7X A;  2OD1 A;  2Y0M A;  2YUU A;  1P9G A;  1ULN A;  2WGC A;  1CHO I;  1TOT A;  1SGE I;  1HDL A;  1KMA A;  4HGU A;  1KBE A;  1MJA A;  2BUS A;  4A24 A;  5CCL A;  1FAQ A;  5J8C A;  2YQP A;  3MEK A;  1SGD I;  1IY6 A;  2LB7 A;  3HH2 C;  1UUC A;  2E5R A;  2JYY A;  2A20 A;  2K9H A;  2QQE A;  5HI7 A;  1U5K A;  2OU2 A;  1PCE A;  2B8T A;  2ENN A;  4FKD A;  1TBR R;  5E3R A;  2OZU A;  3QTL D;  2KMQ A;  2ORW A;  2QQC A;  2X3T A;  1CE3 A;  2GKR I;  2ODD A;  5J8F A;  1AN1 I;  1KBF A;  1V1H A;  3OXG A;  1S20 A;  1SGP I;  7WGA A;  2ENZ A;  2NU4 I;  1SGN I;  1BUS A;  4E1R A;  1CT2 I;  1MT1 A;  1PPF I;  1PTQ A;  1TGS I;  2N17 A;  3R5B A;  4MPI A;  1UVG A;  1TBN A;  2GIV A;  3OXL A;  2JA1 A;  3TOA A;  2DKV A;  3SGB I;  1CT4 I;  1RFH A;  1BMO A;  3UGL A;  3FC3 A;  1WKX A;  2P6A C;  4B6D A;  2NU3 I;  3GOX A;  1H0Z A;  1YTP A;  2V53 A;  1X74 A;  1HJA I;  1XA6 A;  1TBQ R;  2F3C I;  5FUX A;  3UOE A;  3VDU A;  1FYB A;  1UHA A;  4AML A;  9WGA A;  3R5C A;  1XX6 A;  2WVJ A;  2L8E A; 
#chains in the Genus database with same CATH homology
 2ARP F;  3E59 A;  3VDP A;  3TJQ A;  1CGI I;  2DIP A;  4SGB I;  4UXI A;  2KCX A;  1M8B A;  1DS3 I;  2N71 A;  2QQD A;  2SGD I;  2VRW B;  3QWP A;  1Z7K B;  3PDN A;  2QPO A;  1SGQ I;  1R0R I;  3D00 A;  1R79 A;  3UEY A;  1CGJ I;  3UFF A;  2V1C A;  1OMT A;  2GKT I;  1UVF A;  3SGQ I;  5JHW C;  2QQ0 A;  2UZ3 A;  2ERW A;  3UEJ A;  1SGR I;  5FUW A;  2LUY A;  2KMR A;  2NU2 I;  1VDD A;  2XRC A;  5CCM A;  4E1P A;  2E73 A;  3BJI A;  5FUY A;  1V1I A;  3KY9 A;  1CSO I;  1PJU A;  1YU6 C;  3SEK C;  1XBT A;  3VE5 A;  1DS2 I;  2KMO A;  2M5X A;  1N13 A;  2N52 A;  1LR7 A;  1OMU A;  2B0U C;  2ORV A;  4OVO A;  5EX0 A;  1FAR A;  4GI3 C;  3UGD A;  2JZM A;  1TIH A;  2J87 A;  2FNF X;  1LR9 A;  2WCY A;  1Y1B A;  1OYV I;  1TUR A;  2SGE I;  3UGI A;  5HQ8 A;  1CT0 I;  2W0T A;  5FUV A;  1IY5 A;  2GVI A;  2NU0 I;  1TBO A;  1HPT A;  3OVO A;  2N1A B;  2DB6 A;  2LEO A;  1IW4 A;  2ELI A;  2JW6 A;  2SGP I;  1X4S A;  1Y8F A;  2JXD A;  2OVO A;  2V1C C;  3OXF A;  1LR8 A;  4UXH A;  1W3S A;  4L9M A;  5DAE A;  3OL0 A;  3RU0 A;  4JCV E;  1SGY I;  5EX3 A;  2SGQ I;  2GKV A;  2KMP A;  2NU1 I;  2ROW A;  2J9R A;  1M8C A;  3E2I A;  4UXJ A;  2CJS C;  1W4R A;  1NUB A;  1PTR A;  1Y1C A;  2SGF I;  1TUS A;  3B4V C;  1OVO A;  3CXL A;  2L7X A;  2OD1 A;  2YUU A;  1CHO I;  1TOT A;  1SGE I;  1HDL A;  1KMA A;  4HGU A;  1KBE A;  2BUS A;  4A24 A;  5CCL A;  1FAQ A;  2YQP A;  3MEK A;  1SGD I;  1IY6 A;  3HH2 C;  1UUC A;  2E5R A;  2JYY A;  2A20 A;  2K9H A;  2QQE A;  5HI7 A;  1U5K A;  1PCE A;  2B8T A;  2ENN A;  4FKD A;  1TBR R;  3QTL D;  2KMQ A;  2ORW A;  2QQC A;  1CE3 A;  2GKR I;  2ODD A;  1KBF A;  1AN1 I;  1V1H A;  3OXG A;  1SGP I;  2ENZ A;  2NU4 I;  1BUS A;  4E1R A;  1CT2 I;  1MT1 A;  1PPF I;  1PTQ A;  1TGS I;  2N17 A;  1UVG A;  1TBN A;  3OXL A;  2JA1 A;  3UGL A;  3SGB I;  1CT4 I;  1RFH A;  1BMO A;  3FC3 A;  2P6A C;  4B6D A;  2NU3 I;  3GOX A;  1H0Z A;  1YTP A;  2V53 A;  1X74 A;  1HJA I;  1XA6 A;  1TBQ R;  2F3C I;  5FUX A;  3VDU A;  1FYB A;  1SGN I;  1XX6 A;  2WVJ A;  2L8E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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