1RQ6A

Solution structure of ribosomal protein s17e from methanobacterium thermoautotrophicum, northeast structural genomics consortium target tt802 / ontario center for structural proteomics target mth0803
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
62
structure length
62
Chain Sequence
MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords 30S ribosomal protein S17e
publication title The solution structure of ribosomal protein S17E from Methanobacterium thermoautotrophicum: a structural homolog of the FF domain.
pubmed doi rcsb
source organism Methanothermobacter thermautotrophicus
total genus 17
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 2003-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00833 Ribosomal_S17e Ribosomal S17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.20 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Ribosomal protein S17e-like 1rq6A00
3JAMR 3J81R 3J7AW 1RQ6A 5A2QR 3J80R 5IT9R 5FLXR
chains in the Genus database with same CATH superfamily
2EV0A 1BI3A 1BI2A 2MVTA 1BI1A 2F5EA 2P0TA 3A52A 3R61A 4O6JA 2QQBA 4O5VA 3JAMR 1G3SA 2EV6A 4HV5A 1ON2A 2M35A 1F5TA 4HX7A 2ISZA 2MZ4A 2F5DA 3J80R 2TDXA 1C0WA 3GLXA 1XCVA 5IT9R 5FLXR 2X98A 1FX7A 4HV6A 3J81R 1G3TA 2EV5A 3J7AW 2HYFA 1P92A 1RQ6A 1G3WA 2MUNA 2QQAA 4HX4A 4HX8A 2F5FA 1U8RA 1DDNA 1BI0A 2DTRA 2QQ9A 1FWZA 1DPRA 2H09A 2F5CA 3R60A 2HYGD 5A2QR 1G3YA 1ON1A 1B1BA
chains in the Genus database with same CATH topology
3JAMR 3J81R 3J7AW 1RQ6A 5A2QR 3J80R 5IT9R 5FLXR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAM R;  3J81 R;  3J7A W;  1RQ6 A;  5A2Q R;  3J80 R;  5IT9 R;  5FLX R; 
#chains in the Genus database with same CATH topology
 2EV0 A;  1BI3 A;  1BI2 A;  2MVT A;  1BI1 A;  2F5E A;  2P0T A;  3A52 A;  3R61 A;  4O6J A;  2QQB A;  4O5V A;  3JAM R;  1G3S A;  2EV6 A;  4HV5 A;  1ON2 A;  2M35 A;  1F5T A;  4HX7 A;  2ISZ A;  2MZ4 A;  2F5D A;  3J80 R;  2TDX A;  1C0W A;  3GLX A;  1XCV A;  5IT9 R;  5FLX R;  2X98 A;  1FX7 A;  4HV6 A;  3J81 R;  1G3T A;  2EV5 A;  3J7A W;  2HYF A;  1P92 A;  1RQ6 A;  1G3W A;  2MUN A;  2QQA A;  4HX4 A;  4HX8 A;  2F5F A;  1U8R A;  1DDN A;  1BI0 A;  2DTR A;  2QQ9 A;  1FWZ A;  1DPR A;  2H09 A;  2F5C A;  3R60 A;  2HYG D;  5A2Q R;  1G3Y A;  1ON1 A;  1B1B A; 
#chains in the Genus database with same CATH homology
 3JAM R;  3J81 R;  3J7A W;  1RQ6 A;  5A2Q R;  3J80 R;  5IT9 R;  5FLX R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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