1SN4A

Structure of scorpion neurotoxin bmk m4
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
64
structure length
64
Chain Sequence
VRDAYIAKPENCVYHCAGNEGCNKLCTDNGAESGYCQWGGRYGNACWCIKLPDDVPIRVPGKCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords PROTEIN (NEUROTOXIN BMK M4)
publication title Crystal structures of two alpha-like scorpion toxins: non-proline cis peptide bonds and implications for new binding site selectivity on the sodium channel.
pubmed doi rcsb
total genus 15
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 1998-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1sn4A00
2ATBA 2I61A 2MZ0A 1JZAA 4AB0A 1NPIA 1NE5A 1T0ZA 2KGQA 2LJMA 2N2QA 1PE4A 1LQIA 2E3FA 4AAZA 1FH3A 1VNAA 1BCGA 1T1TA 1B3CA 1WMTA 1DQ7A 2LT8A 1T7EA 1C56A 1ZYVA 1DJTA 1SN1A 1PX9A 2E3GA 2LY5A 1P0AA 1WWNA 2KPYA 1WT7A 2YBRC 5CY0A 1SN4A 1GPSA 1VNBA 2N66A 4V1DC 1ZFUA 1JKZA 2E0HA 1I2VA 1LQQA 1OZZA 1NRBA 4KYPA 2KBHA 1TI5A 2N69A 1OMYA 2KYQA 4CQKA 1I2UA 1P00A 1B7DA 1C55A 2KBKA 1L4VA 2BRZA 1I6FA 2KBJA 2B3CA 2LR3A 2B68A 1JXCA 2YEOA 1ICAA 1ZVEA 1BRZA 1GPTA 1AYJA 1I6GA 4HE7A 2GL1A 1T7AA 2SN3A 1KV0A 1N4NA 2LKBA 2KJAA 1CN2A 1CHZA 3E7UX 2KSKA 1SNBA 2LJ7A 3PSMA 1PTXA 1BK8A 1SEGA 1MYNA 1NRAA 1AHOA 2YC1C 1ZYWA 2LI7A 1ZU3A 4UJ0A 4AEIA 1ZVGA 3E7RL 2NY9X 5KK4A 1BMRA 1NH5A 1JZBA 2LY6A 2M8BB 2N2RA 2ASCA 4HHFA 1T7BA 2A7TA 1ZUTA 2NY8X 1MR4A 1LQHA
chains in the Genus database with same CATH superfamily
1NGCA 2ATBA 2I61A 2MZ0A 3D2EB 1JZAA 5AQGA 1NPIA 3FE1A 4AB0A 4H5RA 3QFPA 1NE5A 1T0ZA 1KAYA 2KGQA 2LJMA 3JXUA 2E88A 3QI7A 1S3XA 5EX5A 2MN5A 5BPNA 5FPDA 2N2QA 1PE4A 1LQIA 2E3FA 1NGDA 4AAZA 1FH3A 1VNAA 1BCGA 1T1TA 2YIOA 1B3CA 4UAEF 5AQQA 3SF4D 5AQHA 1WMTA 1DQ7A 2QWQA 2LT8A 3FZMA 1T7EA 3KHWA 3M3ZA 1C56A 1NGHA 1ZYVA 1QQMA 1DJTA 1SN1A 2QWNA 5FPMA 1PX9A 2E3GA 1NGIA 2LY5A 1P0AA 1QQOA 1WWNA 2K35A 2KPYA 3AY9A 2QWMA 4HWIA 3LDQA 5AQTA 5AQSA 1WT7A 2QWPA 2YBRC 4KBOA 2V7ZA 5CY0A 1SN4A 2QWLA 3BK3C 3KVGA 3KP1A 1GPSA 2GMOA 1KAZA 5F2RA 5F1XA 1VNBA 2N66A 3ATVA 4V1DC 5AQKA 1NGAA 3R2VA 1ZFUA 1KAXA 4UAFE 1JKZA 3D2EA 5BN9A 2E0HA 3I33A 2KHOA 1LQQA 3FZLA 1OZZA 1NRBA 4KYPA 1I2VA 5AQPA 1K8BA 2KBHA 1TI5A 2N69A 1ATSA 3KOZA 1OMYA 5AQUA 2KYQA 4CQKA 1I2UA 1P00A 1BA1A 1B7DA 1C55A 5AQMA 3LDNA 2KBKA 5EXWA 1L4VA 2BRZA 2E8AA 3GDQA 3IUCA 1I6FA 5EY4A 3KP0A 2KBJA 2JDQD 3A8YA 5BPLA 1NGBA 1JXCA 2B3CA 2B68A 2LR3A 2YEOA 1ICAA 1ZVEA 5EVZA 5AQFA 3HSCA 5AQWA 1BRZA 1AYJA 1GPTA 1I6GA 3GL1A 1BUPA 2BUPA 3KC6A 4H5TA 4FL9A 4HE7A 2GL1A 1T7AA 4H5VA 2SN3A 1KV0A 2LN8A 1HX1A 1N4NA 5BN8A 2LKBA 3FZFA 2KJAA 2MBKA 3C7NB 5AQYA 1POIA 3D2FB 5AR0A 5AQXA 1CN2A 3GKUA 5AQRA 1CHZA 3KOYA 2VY6A 3D2FA 2QWRA 3E7UX 2KSKA 1BA0A 1SNBA 2LJ7A 3PSMA 3QMLA 1PTXA 1BK8A 3CQXA 1DKGD 5BPMA 3L6QA 1SEGA 1ATRA 1YUWA 1MYNA 1NGGA 3FZKA 1NRAA 4H5WA 3L56A 5AQIA 1HJOA 1AHOA 2YC1C 1ZYWA 2LI7A 3KOXA 1ZU3A 4UJ0A 3CW4A 3QFUA 4IO8A 2QWOA 3LDPA 5AQVA 5AQLA 1XRSB 3LDOA 5AQOA 1HPMA 2QXLA 4AEIA 1ZVGA 2D56A 3E7RL 4H5NA 1NGJA 2G2KA 2NY9X 5KK4A 1BMRA 1QQNA 1NH5A 5AQNA 4GNIA 2QW9A 5AQJA 1JZBA 2LY6A 3LDLA 2M8BB 2N2RA 4FSVA 1NGEA 3KOWA 5AQZA 2E2FA 2YIPA 5FPNA 5F0XA 2YILA 2ASCA 4HHFA 1UGLA 4UADE 1T7BA 3C7NA 2A7TA 1ZUTA 2NY8X 3ATUA 1MR4A 5FPEA 3FZHA 1LQHA 3L4IA 1NGFA
chains in the Genus database with same CATH topology
2ATBA 2I61A 2MZ0A 1JZAA 4AB0A 1NPIA 1NE5A 1T0ZA 2KGQA 2LJMA 2N2QA 1PE4A 1LQIA 2E3FA 4AAZA 1FH3A 1VNAA 1BCGA 1T1TA 1B3CA 1WMTA 1DQ7A 2LT8A 1T7EA 1C56A 1ZYVA 1DJTA 1SN1A 1PX9A 2E3GA 2LY5A 1P0AA 1WWNA 2KPYA 1WT7A 2YBRC 5CY0A 1SN4A 1GPSA 1VNBA 2N66A 4V1DC 1ZFUA 1JKZA 2E0HA 1I2VA 1LQQA 1OZZA 1NRBA 4KYPA 2KBHA 1TI5A 2N69A 1OMYA 2KYQA 4CQKA 1I2UA 1P00A 1B7DA 1C55A 2KBKA 1L4VA 2BRZA 1I6FA 2KBJA 2B3CA 2LR3A 2B68A 1JXCA 2YEOA 1ICAA 1ZVEA 1BRZA 1GPTA 1AYJA 1I6GA 4HE7A 2GL1A 1T7AA 2SN3A 1KV0A 1N4NA 2LKBA 2KJAA 1CN2A 1CHZA 3E7UX 2KSKA 1SNBA 2LJ7A 3PSMA 1PTXA 1BK8A 1SEGA 1MYNA 1NRAA 1AHOA 2YC1C 1ZYWA 2LI7A 1ZU3A 4UJ0A 4AEIA 1ZVGA 3E7RL 2NY9X 5KK4A 1BMRA 1NH5A 1JZBA 2LY6A 2M8BB 2N2RA 2ASCA 4HHFA 1T7BA 2A7TA 1ZUTA 2NY8X 1MR4A 1LQHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ATB A;  2I61 A;  2MZ0 A;  1JZA A;  4AB0 A;  1NPI A;  1NE5 A;  1T0Z A;  2KGQ A;  2LJM A;  2N2Q A;  1PE4 A;  1LQI A;  2E3F A;  4AAZ A;  1FH3 A;  1VNA A;  1BCG A;  1T1T A;  1B3C A;  1WMT A;  1DQ7 A;  2LT8 A;  1T7E A;  1C56 A;  1ZYV A;  1DJT A;  1SN1 A;  1PX9 A;  2E3G A;  2LY5 A;  1P0A A;  1WWN A;  2KPY A;  1WT7 A;  2YBR C;  5CY0 A;  1SN4 A;  1GPS A;  1VNB A;  2N66 A;  4V1D C;  1ZFU A;  1JKZ A;  2E0H A;  1I2V A;  1LQQ A;  1OZZ A;  1NRB A;  4KYP A;  2KBH A;  1TI5 A;  2N69 A;  1OMY A;  2KYQ A;  4CQK A;  1I2U A;  1P00 A;  1B7D A;  1C55 A;  2KBK A;  1L4V A;  2BRZ A;  1I6F A;  2KBJ A;  2B3C A;  2LR3 A;  2B68 A;  1JXC A;  2YEO A;  1ICA A;  1ZVE A;  1BRZ A;  1GPT A;  1AYJ A;  1I6G A;  4HE7 A;  2GL1 A;  1T7A A;  2SN3 A;  1KV0 A;  1N4N A;  2LKB A;  2KJA A;  1CN2 A;  1CHZ A;  3E7U X;  2KSK A;  1SNB A;  2LJ7 A;  3PSM A;  1PTX A;  1BK8 A;  1SEG A;  1MYN A;  1NRA A;  1AHO A;  2YC1 C;  1ZYW A;  2LI7 A;  1ZU3 A;  4UJ0 A;  4AEI A;  1ZVG A;  3E7R L;  2NY9 X;  5KK4 A;  1BMR A;  1NH5 A;  1JZB A;  2LY6 A;  2M8B B;  2N2R A;  2ASC A;  4HHF A;  1T7B A;  2A7T A;  1ZUT A;  2NY8 X;  1MR4 A;  1LQH A; 
#chains in the Genus database with same CATH topology
 1NGC A;  2ATB A;  2I61 A;  2MZ0 A;  3D2E B;  1JZA A;  5AQG A;  1NPI A;  3FE1 A;  4AB0 A;  4H5R A;  3QFP A;  1NE5 A;  1T0Z A;  1KAY A;  2KGQ A;  2LJM A;  3JXU A;  2E88 A;  3QI7 A;  1S3X A;  5EX5 A;  2MN5 A;  5BPN A;  5FPD A;  2N2Q A;  1PE4 A;  1LQI A;  2E3F A;  1NGD A;  4AAZ A;  1FH3 A;  1VNA A;  1BCG A;  1T1T A;  2YIO A;  1B3C A;  4UAE F;  5AQQ A;  3SF4 D;  5AQH A;  1WMT A;  1DQ7 A;  2QWQ A;  2LT8 A;  3FZM A;  1T7E A;  3KHW A;  3M3Z A;  1C56 A;  1NGH A;  1ZYV A;  1QQM A;  1DJT A;  1SN1 A;  2QWN A;  5FPM A;  1PX9 A;  2E3G A;  1NGI A;  2LY5 A;  1P0A A;  1QQO A;  1WWN A;  2K35 A;  2KPY A;  3AY9 A;  2QWM A;  4HWI A;  3LDQ A;  5AQT A;  5AQS A;  1WT7 A;  2QWP A;  2YBR C;  4KBO A;  2V7Z A;  5CY0 A;  1SN4 A;  2QWL A;  3BK3 C;  3KVG A;  3KP1 A;  1GPS A;  2GMO A;  1KAZ A;  5F2R A;  5F1X A;  1VNB A;  2N66 A;  3ATV A;  4V1D C;  5AQK A;  1NGA A;  3R2V A;  1ZFU A;  1KAX A;  4UAF E;  1JKZ A;  3D2E A;  5BN9 A;  2E0H A;  3I33 A;  2KHO A;  1LQQ A;  3FZL A;  1OZZ A;  1NRB A;  4KYP A;  1I2V A;  5AQP A;  1K8B A;  2KBH A;  1TI5 A;  2N69 A;  1ATS A;  3KOZ A;  1OMY A;  5AQU A;  2KYQ A;  4CQK A;  1I2U A;  1P00 A;  1BA1 A;  1B7D A;  1C55 A;  5AQM A;  3LDN A;  2KBK A;  5EXW A;  1L4V A;  2BRZ A;  2E8A A;  3GDQ A;  3IUC A;  1I6F A;  5EY4 A;  3KP0 A;  2KBJ A;  2JDQ D;  3A8Y A;  5BPL A;  1NGB A;  1JXC A;  2B3C A;  2B68 A;  2LR3 A;  2YEO A;  1ICA A;  1ZVE A;  5EVZ A;  5AQF A;  3HSC A;  5AQW A;  1BRZ A;  1AYJ A;  1GPT A;  1I6G A;  3GL1 A;  1BUP A;  2BUP A;  3KC6 A;  4H5T A;  4FL9 A;  4HE7 A;  2GL1 A;  1T7A A;  4H5V A;  2SN3 A;  1KV0 A;  2LN8 A;  1HX1 A;  1N4N A;  5BN8 A;  2LKB A;  3FZF A;  2KJA A;  2MBK A;  3C7N B;  5AQY A;  1POI A;  3D2F B;  5AR0 A;  5AQX A;  1CN2 A;  3GKU A;  5AQR A;  1CHZ A;  3KOY A;  2VY6 A;  3D2F A;  2QWR A;  3E7U X;  2KSK A;  1BA0 A;  1SNB A;  2LJ7 A;  3PSM A;  3QML A;  1PTX A;  1BK8 A;  3CQX A;  1DKG D;  5BPM A;  3L6Q A;  1SEG A;  1ATR A;  1YUW A;  1MYN A;  1NGG A;  3FZK A;  1NRA A;  4H5W A;  3L56 A;  5AQI A;  1HJO A;  1AHO A;  2YC1 C;  1ZYW A;  2LI7 A;  3KOX A;  1ZU3 A;  4UJ0 A;  3CW4 A;  3QFU A;  4IO8 A;  2QWO A;  3LDP A;  5AQV A;  5AQL A;  1XRS B;  3LDO A;  5AQO A;  1HPM A;  2QXL A;  4AEI A;  1ZVG A;  2D56 A;  3E7R L;  4H5N A;  1NGJ A;  2G2K A;  2NY9 X;  5KK4 A;  1BMR A;  1QQN A;  1NH5 A;  5AQN A;  4GNI A;  2QW9 A;  5AQJ A;  1JZB A;  2LY6 A;  3LDL A;  2M8B B;  2N2R A;  4FSV A;  1NGE A;  3KOW A;  5AQZ A;  2E2F A;  2YIP A;  5FPN A;  5F0X A;  2YIL A;  2ASC A;  4HHF A;  1UGL A;  4UAD E;  1T7B A;  3C7N A;  2A7T A;  1ZUT A;  2NY8 X;  3ATU A;  1MR4 A;  5FPE A;  3FZH A;  1LQH A;  3L4I A;  1NGF A; 
#chains in the Genus database with same CATH homology
 2ATB A;  2I61 A;  2MZ0 A;  1JZA A;  4AB0 A;  1NPI A;  1NE5 A;  1T0Z A;  2KGQ A;  2LJM A;  2N2Q A;  1PE4 A;  1LQI A;  2E3F A;  4AAZ A;  1FH3 A;  1VNA A;  1BCG A;  1T1T A;  1B3C A;  1WMT A;  1DQ7 A;  2LT8 A;  1T7E A;  1C56 A;  1ZYV A;  1DJT A;  1SN1 A;  1PX9 A;  2E3G A;  2LY5 A;  1P0A A;  1WWN A;  2KPY A;  1WT7 A;  2YBR C;  5CY0 A;  1SN4 A;  1GPS A;  1VNB A;  2N66 A;  4V1D C;  1ZFU A;  1JKZ A;  2E0H A;  1I2V A;  1LQQ A;  1OZZ A;  1NRB A;  4KYP A;  2KBH A;  1TI5 A;  2N69 A;  1OMY A;  2KYQ A;  4CQK A;  1I2U A;  1P00 A;  1B7D A;  1C55 A;  2KBK A;  1L4V A;  2BRZ A;  1I6F A;  2KBJ A;  2B3C A;  2LR3 A;  2B68 A;  1JXC A;  2YEO A;  1ICA A;  1ZVE A;  1BRZ A;  1GPT A;  1AYJ A;  1I6G A;  4HE7 A;  2GL1 A;  1T7A A;  2SN3 A;  1KV0 A;  1N4N A;  2LKB A;  2KJA A;  1CN2 A;  1CHZ A;  3E7U X;  2KSK A;  1SNB A;  2LJ7 A;  3PSM A;  1PTX A;  1BK8 A;  1SEG A;  1MYN A;  1NRA A;  1AHO A;  2YC1 C;  1ZYW A;  2LI7 A;  1ZU3 A;  4UJ0 A;  4AEI A;  1ZVG A;  3E7R L;  2NY9 X;  5KK4 A;  1BMR A;  1NH5 A;  1JZB A;  2LY6 A;  2M8B B;  2N2R A;  2ASC A;  4HHF A;  1T7B A;  2A7T A;  1ZUT A;  2NY8 X;  1MR4 A;  1LQH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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