1SVQA

Structure of severin domain 2 in solution
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
94
structure length
94
Chain Sequence
EYKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLLGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Actin-binding
molecule keywords SEVERIN
publication title Structure of severin domain 2 in solution.
pubmed doi rcsb
source organism Dictyostelium discoideum
total genus 17
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 1994-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1svqA00
3EG9B 1NMDG 1VKKA 2NUPB 1PD0A 3A5OS 2FGHA 3FG7A 1EQYS 1RGIG 3CJBG 3EH2A 1NLVG 5HVKD 4PKGG 5L6WC 3CI5G 3EH1A 1MDUA 1NM1G 4PKHB 2LLFA 2KVKA 4KEDA 3A5MS 5KYXA 1C0GS 1COFA 1YVNG 2MP4A 5A1MA 1WM4A 3FFKA 4S10C 4KEFA 3EGDA 1T3YA 3TU5B 1V6FA 3L50A 1SVQA 1AK7A 4Z94G 2NUTB 3CIPG 2VACA 5IVUA 1M2VB 1T44G 5HVKB 3EFOB 1CNUA 2QTVA 1YAGG 2D8BA 1PCXA 1C0FS 2I2QA 5KYUB 1Q8XA 5FAFA 1UDMA 1D0NA 3A5NS 2MOTA 3CJCG 3EGXB 5KYYA 1WNJA 3DAWB 3EG9A 2NUPA 1D4XG 1KCQA 1ESVS 3A5LS 1WFSA 4BEX1 1SVRA 1QPVA 5KYWA 4CBUG 3FFNA 1AK6A 2FH1A 1AHQA 1M2OA 5KYNA 1TMWA 4LIZA 2VIKA 1DEJS 2XFAA 1M4JA 5KYXB 2FH4A 4JD2H 1H1VG 5DD2A 1VFQA 4CBWG 1T3XA 1HQZ1 3EGDB 4CBXG 1PD1A 5FAEA 2LXXA 2NUTA 2XF1A 1M2VA 3EFOA 5KYWB 2VILA 1Q8GA 2LJ8A 2FF3A 1NPHA 1CFYA 1J72A 1T2LA 5KYUA 1X67A 2MV2A 4KEEA 2W0IA 1TVJA 1P8ZG 3FG6A 1SVYA 1JHWA 1F7SA 4PKIG 2FF6G 2FH3A 2HD7A 3EGXA 2L72A 1P8XA 3Q2BA 2FH2A 5KYYB
chains in the Genus database with same CATH superfamily
3EG9B 1NMDG 1VKKA 2NUPB 1PD0A 3A5OS 2FGHA 3FG7A 1EQYS 1RGIG 3CJBG 3EH2A 1NLVG 5HVKD 4PKGG 5L6WC 3CI5G 3EH1A 1MDUA 1NM1G 4PKHB 2LLFA 2KVKA 4KEDA 3A5MS 5KYXA 1C0GS 1COFA 1YVNG 2MP4A 5A1MA 1WM4A 3FFKA 4S10C 4KEFA 3EGDA 1T3YA 3TU5B 1V6FA 3L50A 1SVQA 1AK7A 4Z94G 2NUTB 3CIPG 2VACA 5IVUA 1M2VB 1T44G 5HVKB 3EFOB 1CNUA 2QTVA 1YAGG 2D8BA 1PCXA 1C0FS 2I2QA 5KYUB 1Q8XA 5FAFA 1UDMA 1D0NA 3A5NS 2MOTA 3CJCG 3EGXB 3DA7A 5KYYA 1WNJA 3DAWB 3EG9A 2NUPA 1D4XG 1KCQA 1ESVS 3A5LS 1WFSA 4BEX1 1SVRA 1QPVA 5KYWA 4CBUG 3FFNA 1AK6A 2FH1A 1AHQA 1M2OA 5KYNA 1TMWA 4LIZA 2VIKA 1DEJS 2XFAA 1M4JA 5KYXB 2FH4A 4JD2H 1H1VG 5DD2A 1VFQA 4CBWG 1T3XA 1HQZ1 3EGDB 4CBXG 1PD1A 5FAEA 2LXXA 2NUTA 2XF1A 1M2VA 3EFOA 5KYWB 2VILA 1Q8GA 2LJ8A 2FF3A 1NPHA 1CFYA 1J72A 1T2LA 5KYUA 1X67A 2MV2A 4KEEA 2W0IA 1TVJA 1P8ZG 3FG6A 1SVYA 1JHWA 1F7SA 4PKIG 2FF6G 2FH3A 2HD7A 3EGXA 2L72A 1P8XA 3Q2BA 2FH2A 5KYYB
chains in the Genus database with same CATH topology
3EG9B 1NMDG 1VKKA 2NUPB 1PD0A 3A5OS 2FGHA 3FG7A 1EQYS 1RGIG 3CJBG 3EH2A 1NLVG 5HVKD 4PKGG 5L6WC 3CI5G 3EH1A 1MDUA 1NM1G 4PKHB 2LLFA 2KVKA 4KEDA 3A5MS 5KYXA 1C0GS 1COFA 1YVNG 2MP4A 5A1MA 1WM4A 3FFKA 4S10C 4KEFA 3EGDA 1T3YA 3TU5B 1V6FA 3L50A 1SVQA 1AK7A 4Z94G 2NUTB 3CIPG 2VACA 5IVUA 1M2VB 1T44G 5HVKB 3EFOB 1CNUA 2QTVA 1YAGG 2D8BA 1PCXA 1C0FS 2I2QA 5KYUB 1Q8XA 5FAFA 1UDMA 1D0NA 3A5NS 2MOTA 3CJCG 3EGXB 3DA7A 5KYYA 1WNJA 3DAWB 3EG9A 2NUPA 1D4XG 1KCQA 1ESVS 3A5LS 1WFSA 4BEX1 1SVRA 1QPVA 5KYWA 4CBUG 3FFNA 1AK6A 2FH1A 1AHQA 1M2OA 5KYNA 1TMWA 4LIZA 2VIKA 1DEJS 2XFAA 1M4JA 5KYXB 2FH4A 4JD2H 1H1VG 5DD2A 1VFQA 4CBWG 1T3XA 1HQZ1 3EGDB 4CBXG 1PD1A 5FAEA 2LXXA 2NUTA 2XF1A 1M2VA 3EFOA 5KYWB 2VILA 1Q8GA 2LJ8A 2FF3A 1NPHA 1CFYA 1J72A 1T2LA 5KYUA 1X67A 2MV2A 4KEEA 2W0IA 1TVJA 1P8ZG 3FG6A 1SVYA 1JHWA 1F7SA 4PKIG 2FF6G 2FH3A 2HD7A 3EGXA 2L72A 1P8XA 3Q2BA 2FH2A 5KYYB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EG9 B;  1NMD G;  1VKK A;  2NUP B;  1PD0 A;  3A5O S;  2FGH A;  3FG7 A;  1EQY S;  1RGI G;  3CJB G;  3EH2 A;  1NLV G;  5HVK D;  4PKG G;  5L6W C;  3CI5 G;  3EH1 A;  1MDU A;  1NM1 G;  4PKH B;  2LLF A;  2KVK A;  4KED A;  3A5M S;  5KYX A;  1C0G S;  1COF A;  1YVN G;  2MP4 A;  5A1M A;  1WM4 A;  3FFK A;  4S10 C;  4KEF A;  3EGD A;  1T3Y A;  3TU5 B;  1V6F A;  3L50 A;  1SVQ A;  1AK7 A;  4Z94 G;  2NUT B;  3CIP G;  2VAC A;  5IVU A;  1M2V B;  1T44 G;  5HVK B;  3EFO B;  1CNU A;  2QTV A;  1YAG G;  2D8B A;  1PCX A;  1C0F S;  2I2Q A;  5KYU B;  1Q8X A;  5FAF A;  1UDM A;  1D0N A;  3A5N S;  2MOT A;  3CJC G;  3EGX B;  5KYY A;  1WNJ A;  3DAW B;  3EG9 A;  2NUP A;  1D4X G;  1KCQ A;  1ESV S;  3A5L S;  1WFS A;  4BEX 1;  1SVR A;  1QPV A;  5KYW A;  4CBU G;  3FFN A;  1AK6 A;  2FH1 A;  1AHQ A;  1M2O A;  5KYN A;  1TMW A;  4LIZ A;  2VIK A;  1DEJ S;  2XFA A;  1M4J A;  5KYX B;  2FH4 A;  4JD2 H;  1H1V G;  5DD2 A;  1VFQ A;  4CBW G;  1T3X A;  1HQZ 1;  3EGD B;  4CBX G;  1PD1 A;  5FAE A;  2LXX A;  2NUT A;  2XF1 A;  1M2V A;  3EFO A;  5KYW B;  2VIL A;  1Q8G A;  2LJ8 A;  2FF3 A;  1NPH A;  1CFY A;  1J72 A;  1T2L A;  5KYU A;  1X67 A;  2MV2 A;  4KEE A;  2W0I A;  1TVJ A;  1P8Z G;  3FG6 A;  1SVY A;  1JHW A;  1F7S A;  4PKI G;  2FF6 G;  2FH3 A;  2HD7 A;  3EGX A;  2L72 A;  1P8X A;  3Q2B A;  2FH2 A;  5KYY B; 
#chains in the Genus database with same CATH topology
 3EG9 B;  1NMD G;  1VKK A;  2NUP B;  1PD0 A;  3A5O S;  2FGH A;  3FG7 A;  1EQY S;  1RGI G;  3CJB G;  3EH2 A;  1NLV G;  5HVK D;  4PKG G;  5L6W C;  3CI5 G;  3EH1 A;  1MDU A;  1NM1 G;  4PKH B;  2LLF A;  2KVK A;  4KED A;  3A5M S;  5KYX A;  1C0G S;  1COF A;  1YVN G;  2MP4 A;  5A1M A;  1WM4 A;  3FFK A;  4S10 C;  4KEF A;  3EGD A;  1T3Y A;  3TU5 B;  1V6F A;  3L50 A;  1SVQ A;  1AK7 A;  4Z94 G;  2NUT B;  3CIP G;  2VAC A;  5IVU A;  1M2V B;  1T44 G;  5HVK B;  3EFO B;  1CNU A;  2QTV A;  1YAG G;  2D8B A;  1PCX A;  1C0F S;  2I2Q A;  5KYU B;  1Q8X A;  5FAF A;  1UDM A;  1D0N A;  3A5N S;  2MOT A;  3CJC G;  3EGX B;  3DA7 A;  5KYY A;  1WNJ A;  3DAW B;  3EG9 A;  2NUP A;  1D4X G;  1KCQ A;  1ESV S;  3A5L S;  1WFS A;  4BEX 1;  1SVR A;  1QPV A;  5KYW A;  4CBU G;  3FFN A;  1AK6 A;  2FH1 A;  1AHQ A;  1M2O A;  5KYN A;  1TMW A;  4LIZ A;  2VIK A;  1DEJ S;  2XFA A;  1M4J A;  5KYX B;  2FH4 A;  4JD2 H;  1H1V G;  5DD2 A;  1VFQ A;  4CBW G;  1T3X A;  1HQZ 1;  3EGD B;  4CBX G;  1PD1 A;  5FAE A;  2LXX A;  2NUT A;  2XF1 A;  1M2V A;  3EFO A;  5KYW B;  2VIL A;  1Q8G A;  2LJ8 A;  2FF3 A;  1NPH A;  1CFY A;  1J72 A;  1T2L A;  5KYU A;  1X67 A;  2MV2 A;  4KEE A;  2W0I A;  1TVJ A;  1P8Z G;  3FG6 A;  1SVY A;  1JHW A;  1F7S A;  4PKI G;  2FF6 G;  2FH3 A;  2HD7 A;  3EGX A;  2L72 A;  1P8X A;  3Q2B A;  2FH2 A;  5KYY B; 
#chains in the Genus database with same CATH homology
 3EG9 B;  1NMD G;  1VKK A;  2NUP B;  1PD0 A;  3A5O S;  2FGH A;  3FG7 A;  1EQY S;  1RGI G;  3CJB G;  3EH2 A;  1NLV G;  5HVK D;  4PKG G;  5L6W C;  3CI5 G;  3EH1 A;  1MDU A;  1NM1 G;  4PKH B;  2LLF A;  2KVK A;  4KED A;  3A5M S;  5KYX A;  1C0G S;  1COF A;  1YVN G;  2MP4 A;  5A1M A;  1WM4 A;  3FFK A;  4S10 C;  4KEF A;  3EGD A;  1T3Y A;  3TU5 B;  1V6F A;  3L50 A;  1SVQ A;  1AK7 A;  4Z94 G;  2NUT B;  3CIP G;  2VAC A;  5IVU A;  1M2V B;  1T44 G;  5HVK B;  3EFO B;  1CNU A;  2QTV A;  1YAG G;  2D8B A;  1PCX A;  1C0F S;  2I2Q A;  5KYU B;  1Q8X A;  5FAF A;  1UDM A;  1D0N A;  3A5N S;  2MOT A;  3CJC G;  3EGX B;  3DA7 A;  5KYY A;  1WNJ A;  3DAW B;  3EG9 A;  2NUP A;  1D4X G;  1KCQ A;  1ESV S;  3A5L S;  1WFS A;  4BEX 1;  1SVR A;  1QPV A;  5KYW A;  4CBU G;  3FFN A;  1AK6 A;  2FH1 A;  1AHQ A;  1M2O A;  5KYN A;  1TMW A;  4LIZ A;  2VIK A;  1DEJ S;  2XFA A;  1M4J A;  5KYX B;  2FH4 A;  4JD2 H;  1H1V G;  5DD2 A;  1VFQ A;  4CBW G;  1T3X A;  1HQZ 1;  3EGD B;  4CBX G;  1PD1 A;  5FAE A;  2LXX A;  2NUT A;  2XF1 A;  1M2V A;  3EFO A;  5KYW B;  2VIL A;  1Q8G A;  2LJ8 A;  2FF3 A;  1NPH A;  1CFY A;  1J72 A;  1T2L A;  5KYU A;  1X67 A;  2MV2 A;  4KEE A;  2W0I A;  1TVJ A;  1P8Z G;  3FG6 A;  1SVY A;  1JHW A;  1F7S A;  4PKI G;  2FF6 G;  2FH3 A;  2HD7 A;  3EGX A;  2L72 A;  1P8X A;  3Q2B A;  2FH2 A;  5KYY B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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