The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
117
|
structure length |
117
|
Chain Sequence |
HMSLAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDASGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQFALQALGVA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription
|
| molecule keywords |
Anti-sigma F factor
|
| publication title |
Crystal Structures of the ADP and ATP Bound Forms of the Bacillus Anti-sigma Factor SpoIIAB in Complex with the Anti-anti-sigma SpoIIAA.
pubmed doi rcsb |
| source organism |
Geobacillus stearothermophilus
|
| total genus |
38
|
| structure length |
117
|
| sequence length |
117
|
| chains with identical sequence |
D, F
|
| ec nomenclature | |
| pdb deposition date | 2004-06-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF01740 | STAS | STAS domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | STAS domain |
#chains in the Genus database with same CATH superfamily 3F43 A; 3OIZ A; 5EUS A; 3IHB A; 1VC1 A; 3IF5 A; 5EUZ A; 1AUZ A; 3LKL A; 1SBO A; 4DGF A; 3IHA A; 2VY9 A; 2KLN A; 3AGD A; 3OIR A; 1H4Z A; 3IH9 A; 3IH8 A; 1TH8 B; 3T6O A; 5EUX A; 4XS5 A; 5EZB A; 1TID B; 4QTP A; 2KA5 A; 4DGH A; 1T6R A; 4HYL A; 1TIL B; 1H4Y A; 3LLO A; 3ZTB A; 5EUW A; 3NY7 A; 5EUU A; 3AGE A; 3MGL A; 1THN B; 3ZXN A; 1BUZ A; 1H4X A; #chains in the Genus database with same CATH topology 5EUZ A; 2DXL A; 1SBO A; 1FC6 A; 3MOG A; 1BPL A; 3T6O A; 4AEJ A; 5EUX A; 4AE2 A; 1TID B; 2KA5 A; 1FCF A; 1T6R A; 4HYL A; 1TIL B; 1H4Y A; 3GVJ A; 1FC9 A; 3GMF A; 3MGL A; 1BUZ A; 4HIZ A; 3EH7 A; 3GHF A; 3IHB A; 3C0K A; 4DGF A; 2AS0 A; 3IHA A; 2CWW A; 1N6E A; 1TH8 B; 2ZOA A; 4JC0 A; 3D3U A; 4QTP A; 1V0E A; 3LLO A; 3GVK A; 5EUW A; 5EUU A; 1H4X A; 4L8K A; 3F43 A; 5EUS A; 1K32 A; 1VC1 A; 1AUZ A; 1N6D A; 2KLN A; 3K50 A; 3V97 A; 1H4Z A; 4XS5 A; 5EZB A; 1HF2 A; 3GK7 A; 1WXW A; 2DXN A; 1V0F A; 1WXX A; 2B78 A; 1J7X A; 2RRL A; 3NY7 A; 3AGE A; 1THN B; 4DGH A; 3VSE A; 3OIZ A; 3DOR A; 4GHN A; 3IF5 A; 1FC7 A; 3LKL A; 4L1C A; 3QDQ A; 3JU4 A; 2VY9 A; 3AGD A; 2ZO9 B; 3OIR A; 3IH9 A; 3V8V A; 3DUP A; 3IH8 A; 4DMG A; 3D03 A; 3LDF A; 2OAS A; 3ZTB A; 3GVL A; 3DJA A; 3ZXN A; 1N6F A; #chains in the Genus database with same CATH homology 3F43 A; 3OIZ A; 5EUS A; 3IHB A; 1VC1 A; 3IF5 A; 5EUZ A; 1AUZ A; 3LKL A; 1SBO A; 4DGF A; 3IHA A; 2VY9 A; 2KLN A; 3AGD A; 3OIR A; 1H4Z A; 3IH9 A; 3IH8 A; 1TH8 B; 3T6O A; 5EUX A; 4XS5 A; 5EZB A; 1TID B; 4QTP A; 2KA5 A; 4DGH A; 1T6R A; 4HYL A; 1TIL B; 1H4Y A; 3LLO A; 3ZTB A; 5EUW A; 3NY7 A; 5EUU A; 3AGE A; 3MGL A; 1THN B; 3ZXN A; 1BUZ A; 1H4X A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
