1TVJA

Solution structure of chick cofilin
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
166
structure length
166
Chain Sequence
MASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEGKPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin-binding protein
molecule keywords Cofilin
publication title NMR Study of the Molecular Basis for Phosphoinositide Regulation of the Cofilin-Actin Interactions.
rcsb
source organism Gallus gallus
total genus 35
structure length 166
sequence length 166
ec nomenclature
pdb deposition date 2004-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1tvjA00
3EGXB 2KVKA 4PKGG 5A1MA 1Q8XA 3A5MS 1UDMA 1NMDG 5KYYA 1M2VA 1J72A 1SVRA 1M2OA 1NM1G 2LLFA 2XFAA 1COFA 4KEDA 1CNUA 3CIPG 4CBUG 1PCXA 2W0IA 1AK6A 3A5LS 1PD0A 5KYWA 3FFKA 3FG7A 1HQZ1 2FH1A 5HVKB 3EH1A 1EQYS 4JD2H 1PD1A 3TU5B 1T2LA 2MP4A 3DAWB 1VKKA 2D8BA 5KYUA 4CBWG 4CBXG 1NPHA 1C0FS 1Q8GA 3L50A 2NUTB 1P8XA 2FH3A 4PKHB 1T44G 2FF3A 3EFOB 3EH2A 4LIZA 5DD2A 1M4JA 3CJBG 5HVKD 2MOTA 2QTVA 3EGXA 4KEEA 2NUPB 2I2QA 1D0NA 1F7SA 3CJCG 3A5OS 3EGDB 2VILA 5KYNA 4KEFA 1TMWA 3EFOA 4Z94G 2NUPA 2VIKA 5FAFA 5FAEA 5KYXB 1AK7A 1D4XG 3EGDA 2VACA 1MDUA 5IVUA 1NLVG 1JHWA 1DEJS 3A5NS 1M2VB 1AHQA 2FH2A 3EG9B 1V6FA 2LJ8A 2LXXA 1P8ZG 2FF6G 4S10C 1H1VG 2FGHA 1WFSA 4BEX1 2NUTA 3Q2BA 1T3XA 2HD7A 1YAGG 5KYWB 3FFNA 2L72A 1CFYA 2XF1A 2MV2A 3EG9A 1TVJA 1SVYA 5KYUB 4PKIG 5L6WC 1ESVS 3FG6A 1VFQA 5KYYB 1YVNG 1T3YA 1KCQA 1WM4A 1SVQA 2FH4A 3CI5G 1QPVA 1X67A 1WNJA 1RGIG 1C0GS 5KYXA
chains in the Genus database with same CATH superfamily
3EGXB 2KVKA 4PKGG 5A1MA 1Q8XA 3A5MS 1UDMA 1NMDG 5KYYA 1M2VA 1J72A 1SVRA 1M2OA 1NM1G 2LLFA 2XFAA 1COFA 4KEDA 1CNUA 3CIPG 4CBUG 1PCXA 2W0IA 1AK6A 3A5LS 1PD0A 5KYWA 3FFKA 3FG7A 1HQZ1 2FH1A 5HVKB 3EH1A 1EQYS 4JD2H 1PD1A 3TU5B 1T2LA 2MP4A 3DAWB 1VKKA 2D8BA 5KYUA 4CBWG 4CBXG 1NPHA 1C0FS 1Q8GA 3L50A 2NUTB 1P8XA 2FH3A 4PKHB 1T44G 2FF3A 3EFOB 3EH2A 4LIZA 5DD2A 1M4JA 3CJBG 5HVKD 2MOTA 2QTVA 3EGXA 4KEEA 2NUPB 2I2QA 1D0NA 1F7SA 3CJCG 3A5OS 3EGDB 2VILA 5KYNA 4KEFA 1TMWA 3EFOA 3DA7A 4Z94G 2NUPA 2VIKA 5FAFA 5FAEA 5KYXB 1AK7A 1D4XG 3EGDA 2VACA 1MDUA 5IVUA 1NLVG 1JHWA 1DEJS 3A5NS 1M2VB 1AHQA 2FH2A 3EG9B 1V6FA 2LJ8A 2LXXA 1P8ZG 2FF6G 4S10C 1H1VG 2FGHA 1WFSA 4BEX1 2NUTA 3Q2BA 1T3XA 2HD7A 1YAGG 5KYWB 3FFNA 2L72A 1CFYA 2XF1A 2MV2A 3EG9A 1TVJA 1SVYA 5KYUB 4PKIG 5L6WC 1ESVS 3FG6A 1VFQA 5KYYB 1YVNG 1T3YA 1KCQA 1WM4A 1SVQA 2FH4A 3CI5G 1QPVA 1X67A 1WNJA 1RGIG 1C0GS 5KYXA
chains in the Genus database with same CATH topology
3EGXB 2KVKA 4PKGG 5A1MA 1Q8XA 3A5MS 1UDMA 1NMDG 5KYYA 1M2VA 1J72A 1SVRA 1M2OA 1NM1G 2LLFA 2XFAA 1COFA 4KEDA 1CNUA 3CIPG 4CBUG 1PCXA 2W0IA 1AK6A 3A5LS 1PD0A 5KYWA 3FFKA 3FG7A 1HQZ1 2FH1A 5HVKB 3EH1A 1EQYS 4JD2H 1PD1A 3TU5B 1T2LA 2MP4A 3DAWB 1VKKA 2D8BA 5KYUA 4CBWG 4CBXG 1NPHA 1C0FS 1Q8GA 3L50A 2NUTB 1P8XA 2FH3A 4PKHB 1T44G 2FF3A 3EFOB 3EH2A 4LIZA 5DD2A 1M4JA 3CJBG 5HVKD 2MOTA 2QTVA 3EGXA 4KEEA 2NUPB 2I2QA 1D0NA 1F7SA 3CJCG 3A5OS 3EGDB 2VILA 5KYNA 4KEFA 1TMWA 3EFOA 3DA7A 4Z94G 2NUPA 2VIKA 5FAFA 5FAEA 5KYXB 1AK7A 1D4XG 3EGDA 2VACA 1MDUA 5IVUA 1NLVG 1JHWA 1DEJS 3A5NS 1M2VB 1AHQA 2FH2A 3EG9B 1V6FA 2LJ8A 2LXXA 1P8ZG 2FF6G 4S10C 1H1VG 2FGHA 1WFSA 4BEX1 2NUTA 3Q2BA 1T3XA 2HD7A 1YAGG 5KYWB 3FFNA 2L72A 1CFYA 2XF1A 2MV2A 3EG9A 1TVJA 1SVYA 5KYUB 4PKIG 5L6WC 1ESVS 3FG6A 1VFQA 5KYYB 1YVNG 1T3YA 1KCQA 1WM4A 1SVQA 2FH4A 3CI5G 1QPVA 1X67A 1WNJA 1RGIG 1C0GS 5KYXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EGX B;  2KVK A;  4PKG G;  5A1M A;  1Q8X A;  3A5M S;  1UDM A;  1NMD G;  5KYY A;  1M2V A;  1J72 A;  1SVR A;  1M2O A;  1NM1 G;  2LLF A;  2XFA A;  1COF A;  4KED A;  1CNU A;  3CIP G;  4CBU G;  1PCX A;  2W0I A;  1AK6 A;  3A5L S;  1PD0 A;  5KYW A;  3FFK A;  3FG7 A;  1HQZ 1;  2FH1 A;  5HVK B;  3EH1 A;  1EQY S;  4JD2 H;  1PD1 A;  3TU5 B;  1T2L A;  2MP4 A;  3DAW B;  1VKK A;  2D8B A;  5KYU A;  4CBW G;  4CBX G;  1NPH A;  1C0F S;  1Q8G A;  3L50 A;  2NUT B;  1P8X A;  2FH3 A;  4PKH B;  1T44 G;  2FF3 A;  3EFO B;  3EH2 A;  4LIZ A;  5DD2 A;  1M4J A;  3CJB G;  5HVK D;  2MOT A;  2QTV A;  3EGX A;  4KEE A;  2NUP B;  2I2Q A;  1D0N A;  1F7S A;  3CJC G;  3A5O S;  3EGD B;  2VIL A;  5KYN A;  4KEF A;  1TMW A;  3EFO A;  4Z94 G;  2NUP A;  2VIK A;  5FAF A;  5FAE A;  5KYX B;  1AK7 A;  1D4X G;  3EGD A;  2VAC A;  1MDU A;  5IVU A;  1NLV G;  1JHW A;  1DEJ S;  3A5N S;  1M2V B;  1AHQ A;  2FH2 A;  3EG9 B;  1V6F A;  2LJ8 A;  2LXX A;  1P8Z G;  2FF6 G;  4S10 C;  1H1V G;  2FGH A;  1WFS A;  4BEX 1;  2NUT A;  3Q2B A;  1T3X A;  2HD7 A;  1YAG G;  5KYW B;  3FFN A;  2L72 A;  1CFY A;  2XF1 A;  2MV2 A;  3EG9 A;  1TVJ A;  1SVY A;  5KYU B;  4PKI G;  5L6W C;  1ESV S;  3FG6 A;  1VFQ A;  5KYY B;  1YVN G;  1T3Y A;  1KCQ A;  1WM4 A;  1SVQ A;  2FH4 A;  3CI5 G;  1QPV A;  1X67 A;  1WNJ A;  1RGI G;  1C0G S;  5KYX A; 
#chains in the Genus database with same CATH topology
 3EGX B;  2KVK A;  4PKG G;  5A1M A;  1Q8X A;  3A5M S;  1UDM A;  1NMD G;  5KYY A;  1M2V A;  1J72 A;  1SVR A;  1M2O A;  1NM1 G;  2LLF A;  2XFA A;  1COF A;  4KED A;  1CNU A;  3CIP G;  4CBU G;  1PCX A;  2W0I A;  1AK6 A;  3A5L S;  1PD0 A;  5KYW A;  3FFK A;  3FG7 A;  1HQZ 1;  2FH1 A;  5HVK B;  3EH1 A;  1EQY S;  4JD2 H;  1PD1 A;  3TU5 B;  1T2L A;  2MP4 A;  3DAW B;  1VKK A;  2D8B A;  5KYU A;  4CBW G;  4CBX G;  1NPH A;  1C0F S;  1Q8G A;  3L50 A;  2NUT B;  1P8X A;  2FH3 A;  4PKH B;  1T44 G;  2FF3 A;  3EFO B;  3EH2 A;  4LIZ A;  5DD2 A;  1M4J A;  3CJB G;  5HVK D;  2MOT A;  2QTV A;  3EGX A;  4KEE A;  2NUP B;  2I2Q A;  1D0N A;  1F7S A;  3CJC G;  3A5O S;  3EGD B;  2VIL A;  5KYN A;  4KEF A;  1TMW A;  3EFO A;  3DA7 A;  4Z94 G;  2NUP A;  2VIK A;  5FAF A;  5FAE A;  5KYX B;  1AK7 A;  1D4X G;  3EGD A;  2VAC A;  1MDU A;  5IVU A;  1NLV G;  1JHW A;  1DEJ S;  3A5N S;  1M2V B;  1AHQ A;  2FH2 A;  3EG9 B;  1V6F A;  2LJ8 A;  2LXX A;  1P8Z G;  2FF6 G;  4S10 C;  1H1V G;  2FGH A;  1WFS A;  4BEX 1;  2NUT A;  3Q2B A;  1T3X A;  2HD7 A;  1YAG G;  5KYW B;  3FFN A;  2L72 A;  1CFY A;  2XF1 A;  2MV2 A;  3EG9 A;  1TVJ A;  1SVY A;  5KYU B;  4PKI G;  5L6W C;  1ESV S;  3FG6 A;  1VFQ A;  5KYY B;  1YVN G;  1T3Y A;  1KCQ A;  1WM4 A;  1SVQ A;  2FH4 A;  3CI5 G;  1QPV A;  1X67 A;  1WNJ A;  1RGI G;  1C0G S;  5KYX A; 
#chains in the Genus database with same CATH homology
 3EGX B;  2KVK A;  4PKG G;  5A1M A;  1Q8X A;  3A5M S;  1UDM A;  1NMD G;  5KYY A;  1M2V A;  1J72 A;  1SVR A;  1M2O A;  1NM1 G;  2LLF A;  2XFA A;  1COF A;  4KED A;  1CNU A;  3CIP G;  4CBU G;  1PCX A;  2W0I A;  1AK6 A;  3A5L S;  1PD0 A;  5KYW A;  3FFK A;  3FG7 A;  1HQZ 1;  2FH1 A;  5HVK B;  3EH1 A;  1EQY S;  4JD2 H;  1PD1 A;  3TU5 B;  1T2L A;  2MP4 A;  3DAW B;  1VKK A;  2D8B A;  5KYU A;  4CBW G;  4CBX G;  1NPH A;  1C0F S;  1Q8G A;  3L50 A;  2NUT B;  1P8X A;  2FH3 A;  4PKH B;  1T44 G;  2FF3 A;  3EFO B;  3EH2 A;  4LIZ A;  5DD2 A;  1M4J A;  3CJB G;  5HVK D;  2MOT A;  2QTV A;  3EGX A;  4KEE A;  2NUP B;  2I2Q A;  1D0N A;  1F7S A;  3CJC G;  3A5O S;  3EGD B;  2VIL A;  5KYN A;  4KEF A;  1TMW A;  3EFO A;  3DA7 A;  4Z94 G;  2NUP A;  2VIK A;  5FAF A;  5FAE A;  5KYX B;  1AK7 A;  1D4X G;  3EGD A;  2VAC A;  1MDU A;  5IVU A;  1NLV G;  1JHW A;  1DEJ S;  3A5N S;  1M2V B;  1AHQ A;  2FH2 A;  3EG9 B;  1V6F A;  2LJ8 A;  2LXX A;  1P8Z G;  2FF6 G;  4S10 C;  1H1V G;  2FGH A;  1WFS A;  4BEX 1;  2NUT A;  3Q2B A;  1T3X A;  2HD7 A;  1YAG G;  5KYW B;  3FFN A;  2L72 A;  1CFY A;  2XF1 A;  2MV2 A;  3EG9 A;  1TVJ A;  1SVY A;  5KYU B;  4PKI G;  5L6W C;  1ESV S;  3FG6 A;  1VFQ A;  5KYY B;  1YVN G;  1T3Y A;  1KCQ A;  1WM4 A;  1SVQ A;  2FH4 A;  3CI5 G;  1QPV A;  1X67 A;  1WNJ A;  1RGI G;  1C0G S;  5KYX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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