1TWHL

Rna polymerase ii complexed with 2'datp
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-directed RNA polymerase II largest subunit
publication title Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.
pubmed doi rcsb
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2004-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 1twhL00
3HKZP 2WB1P 2JA8L 4AYBP 4A3DL 5FLML 2E2IL 4A3LL 5IYCL 1I50L 3GTOL 3M4OL 3GTLL 4X6AL 2JA6L 1I3QL 1R9TL 4A3FL 3H3VM 5IYBL 4A3KL 1Y1VL 4A93L 5M5WL 2NVYL 2JA7L 4BY1L 4A3IL 3M3YL 3S1QL 2NVQL 4BBRL 5M3FL 5M5YL 3I4ML 1I6HL 5M3ML 4A3CL 5IP9L 5C44L 4A3EL 4A3GL 4BY7L 4BBSL 4A3JL 3S1ML 3I4NL 2JA5L 3S2DL 1Y1WL 5C4XL 3RZOL 3FKIL 3HOUL 4C2M1 2E2JL 3HOZL 4BXXL 3GTQL 2B63L 3HOWL 5FJ8L 1TWFL 1WCML 2NVXL 2VUML 4C3IL 3GTPL 4Y52L 4QIWP 3HOVL 3PO3L 3S1NL 3GTKL 1TWGL 2Y0SP 2YU9L 2NVTL 2WAQP 3HOXL 3S14L 3K7AL 1TWHL 4A3BL 1K83L 3RZDL 1TWAL 5C4JL 3GTJL 3S1RL 1SFOL 3PO2L 4Y7NL 3GTGL 5M5XL 5IP7L 2R7ZL 3CQZL 3S2HL 3GTML 3S15L 5C3EL 2R93L 1TWCL 4A3ML 3HOYL 4C3HL 3H0GL 2R92L 4C3JL 2E2HL 3S17L 2PMZP 5IYDL 3S16L
chains in the Genus database with same CATH superfamily
5GADc 2JA8L 4AR3A 1YK5A 5FLML 1QYBA 5IYCL 3GTOL 4LHNA 1R0JA 1I3QL 4WFN1 1VZHA 2ZIXA 4A3FL 1Y1VL 3HJWB 2JI3A 1OWBA 4JADA 1OWCA 4AI1A 5EIOC 3I4ML 5M3ML 2Z3RB 4A3CL 2H12A 2KKDA 1PFVA 2XJSA 4U671 1F4LA 4BBSL 2C6BA 2M4VA 4JAFA 4ZN3B 3LWRB 2HVYC 1DVBA 4ZN1B 5H1Sc 1IRNA 2QL0A 3MPSA 3HOUL 1C09A 5AN9H 1B2OA 3GTQL 3B08B 3HOWL 2XJQA 4C3IL 3GTPL 5K2ME 5GAGc 4YWMA 3QVDA 3PO3L 1SMMA 2YU9L 2NVTL 2XJUA 1IROA 1S2ZA 2CKCA 3K7AL 5MGNA 1VCXA 3HAXC 4A3BL 1E8JA 2BE5D 3P8BA 5M5XL 1PFUA 5MF6A 3K35A 3PIO1 5RXNA 1LKOA 4GS7D 4AI3A 5C3EL 4ME3A 2V0FA 2M4YA 1PZXA 3H0GL 1RDVA 3SS2A 2PMZP 5IYDL 3JR7A 1BFYA 3QQCE 1R0IA 2ERJA 4AHZA 1I50L 4LHLA 3GTLL 3H97A 1T9OA 1YV1A 1NNQA 1P7PA 5JVG1 1R9TL 4XXBB 5IYBL 2DSXA 1PFWA 1RB9A 5M5WL 2M6PA 4RXNA 4BY1L 4A3IL 1B71A 1CAAA 5MFZA 1I6HL 3KYXA 2A6HD 2GMGA 3PL5A 2XJVA 1Z92B 4E6YA 1YUXA 1PFYA 1RDGA 3I4NL 4AR4A 3RYGA 1T9PA 2JA5L 3S2DL 1SMWA 1Y1WL 3RZOL 5AI2A 3LWVB 4QIWP 3HOVL 2ERSA 1LTLA 2AQCA 4XGHA 1VZGA 3S1NL 1R0FA 2Y0SP 2PVXA 5DM71 1NXEA 2EY4E 3S14L 1ZRPA 3LWOB 1WJVA 3RZDL 1SFOL 4Y7NL 1B13A 1BQ8A 1BQ9A 4K9FA 4AI0A 3VPBE 4A3ML 3PZAA 3P2AA 2R92L 1LKPA 1T9QA 3KYYA 1QQTA 3LWPB 2E2HL 3B0AB 3FDJA 3S16L 2XJRA 1IW7D 3HKZP 5DM61 1QCVA 2E2IL 2PVEA 2PSMC 4A3LL 2MS3A 3M4OL 3IU3I 4X6AL 2JA6L 3LNLA 2CKAA 1B2JA 2RFKB 2PPTA 1RWDA 4UY81 4A93L 1YK4A 4POGA 2JA7L 2NYDA 3M3YL 3MQKB 2Z3QB 2NVQL 3WWNB 4BBRL 5M5YL 1FHMA 3HJYB 1RYTA 3KYWA 5IP9L 4AI2A 4A3GL 5MFPA 1CADA 4TPUA 5AI3A 4AHYA 3S1ML 1VZIA 2C6AA 2VL6A 2M6OA 2RDVA 3RZTA 5C4XL 4C2M1 2E2JL 3LPEB 2B63L 1BRFA 3J7Y1 2AYJA 1WCML 2VUML 3LWQB 2XJTA 7RXNA 5IY0A 4JAGA 2B5ID 3GTKL 1LKMA 4V196 1H7VA 2A69D 2KN9A 2K2DA 3KYUA 2PYAA 3S1RL 1TWAL 3PO2L 4POFA 3GTGL 1ODHA 1IU5A 1R0HA 2R7ZL 3CQZL 3S2HL 2A6ED 1DX8A 2O5JD 2LCQA 5GAEc 2R93L 1SMUA 1TWCL 5EINC 3HOYL 4C3HL 4C3JL 2HR5A 1R0GA 4AHWA 1RYQA 2WB1P 4AYBP 4A3DL 3H99A 4AR5A 3WWLA 1JYBA 2CR8A 3H3VM 4A3KL 1YUZA 1S30A 2NVYL 2A68D 3ZG6A 3KYVA 3S1QL 5M3FL 4B8CD 2V0EA 5C44L 4A3EL 8RXNA 4BY7L 5MLC3 3H9CA 4A3JL 3H9BA 5GAHc 1IU6A 3RZ6A 1FHHA 1S24A 3FKIL 4G6BA 3HOZL 3MSUA 4BXXL 2XJPA 3J7Z1 3NFPI 5FJ8L 1TWFL 2NVXL 4Y52L 2J9UB 2V3BB 3PKJA 1BE7A 1TWGL 2APOB 3PKIA 2WAQP 3HOXL 5JVH1 1TWHL 6RXNA 4JAEA 2JI1A 1K83L 3A44A 5C4JL 3GTJL 2L0ZA 4AHXA 5IP7L 3PIP1 3PWFA 3GTML 3S15L 2JI2A 1NXGA 2AUSB 4YWLA 4AR6A 4TVMA 3S17L
chains in the Genus database with same CATH topology
3HKZP 2WB1P 2JA8L 4AYBP 4A3DL 5FLML 2E2IL 4A3LL 5IYCL 1I50L 3GTOL 3M4OL 3GTLL 4X6AL 2JA6L 1I3QL 1R9TL 4A3FL 3H3VM 5IYBL 4A3KL 1Y1VL 4A93L 5M5WL 2NVYL 2JA7L 4BY1L 4A3IL 3M3YL 3S1QL 2NVQL 4BBRL 5M3FL 5M5YL 3I4ML 1I6HL 5M3ML 4A3CL 5IP9L 5C44L 4A3EL 4A3GL 4BY7L 4BBSL 4A3JL 3S1ML 3I4NL 2JA5L 3S2DL 1Y1WL 5C4XL 3RZOL 3FKIL 3HOUL 4C2M1 2E2JL 3HOZL 4BXXL 3GTQL 2B63L 3HOWL 5FJ8L 1TWFL 1WCML 2NVXL 2VUML 4C3IL 3GTPL 4Y52L 4QIWP 3HOVL 3PO3L 3S1NL 3GTKL 1TWGL 2Y0SP 2YU9L 2NVTL 2WAQP 3HOXL 3S14L 3K7AL 1TWHL 4A3BL 1K83L 3RZDL 1TWAL 5C4JL 3GTJL 3S1RL 1SFOL 3PO2L 4Y7NL 3GTGL 5M5XL 5IP7L 2R7ZL 3CQZL 3S2HL 3GTML 3S15L 5C3EL 2R93L 1TWCL 4A3ML 3HOYL 4C3HL 3H0GL 2R92L 4C3JL 2E2HL 3S17L 2PMZP 5IYDL 3S16L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HKZ P;  2WB1 P;  2JA8 L;  4AYB P;  4A3D L;  5FLM L;  2E2I L;  4A3L L;  5IYC L;  1I50 L;  3GTO L;  3M4O L;  3GTL L;  4X6A L;  2JA6 L;  1I3Q L;  1R9T L;  4A3F L;  3H3V M;  5IYB L;  4A3K L;  1Y1V L;  4A93 L;  5M5W L;  2NVY L;  2JA7 L;  4BY1 L;  4A3I L;  3M3Y L;  3S1Q L;  2NVQ L;  4BBR L;  5M3F L;  5M5Y L;  3I4M L;  1I6H L;  5M3M L;  4A3C L;  5IP9 L;  5C44 L;  4A3E L;  4A3G L;  4BY7 L;  4BBS L;  4A3J L;  3S1M L;  3I4N L;  2JA5 L;  3S2D L;  1Y1W L;  5C4X L;  3RZO L;  3FKI L;  3HOU L;  4C2M 1;  2E2J L;  3HOZ L;  4BXX L;  3GTQ L;  2B63 L;  3HOW L;  5FJ8 L;  1TWF L;  1WCM L;  2NVX L;  2VUM L;  4C3I L;  3GTP L;  4Y52 L;  4QIW P;  3HOV L;  3PO3 L;  3S1N L;  3GTK L;  1TWG L;  2Y0S P;  2YU9 L;  2NVT L;  2WAQ P;  3HOX L;  3S14 L;  3K7A L;  1TWH L;  4A3B L;  1K83 L;  3RZD L;  1TWA L;  5C4J L;  3GTJ L;  3S1R L;  1SFO L;  3PO2 L;  4Y7N L;  3GTG L;  5M5X L;  5IP7 L;  2R7Z L;  3CQZ L;  3S2H L;  3GTM L;  3S15 L;  5C3E L;  2R93 L;  1TWC L;  4A3M L;  3HOY L;  4C3H L;  3H0G L;  2R92 L;  4C3J L;  2E2H L;  3S17 L;  2PMZ P;  5IYD L;  3S16 L; 
#chains in the Genus database with same CATH topology
 5GAD c;  2JA8 L;  4AR3 A;  1YK5 A;  5FLM L;  1QYB A;  5IYC L;  3GTO L;  4LHN A;  1R0J A;  1I3Q L;  4WFN 1;  1VZH A;  2ZIX A;  4A3F L;  1Y1V L;  3HJW B;  2JI3 A;  1OWB A;  4JAD A;  1OWC A;  4AI1 A;  5EIO C;  3I4M L;  5M3M L;  2Z3R B;  4A3C L;  2H12 A;  2KKD A;  1PFV A;  2XJS A;  4U67 1;  1F4L A;  4BBS L;  2C6B A;  2M4V A;  4JAF A;  4ZN3 B;  3LWR B;  2HVY C;  1DVB A;  4ZN1 B;  5H1S c;  1IRN A;  2QL0 A;  3MPS A;  3HOU L;  1C09 A;  5AN9 H;  1B2O A;  3GTQ L;  3B08 B;  3HOW L;  2XJQ A;  4C3I L;  3GTP L;  5K2M E;  5GAG c;  4YWM A;  3QVD A;  3PO3 L;  1SMM A;  2YU9 L;  2NVT L;  2XJU A;  1IRO A;  1S2Z A;  2CKC A;  3K7A L;  5MGN A;  1VCX A;  3HAX C;  4A3B L;  1E8J A;  2BE5 D;  3P8B A;  5M5X L;  1PFU A;  5MF6 A;  3K35 A;  3PIO 1;  5RXN A;  1LKO A;  4GS7 D;  4AI3 A;  5C3E L;  4ME3 A;  2V0F A;  2M4Y A;  1PZX A;  3H0G L;  1RDV A;  3SS2 A;  2PMZ P;  5IYD L;  3JR7 A;  1BFY A;  3QQC E;  1R0I A;  2ERJ A;  4AHZ A;  1I50 L;  4LHL A;  3GTL L;  3H97 A;  1T9O A;  1YV1 A;  1NNQ A;  1P7P A;  5JVG 1;  1R9T L;  4XXB B;  5IYB L;  2DSX A;  1PFW A;  1RB9 A;  5M5W L;  2M6P A;  4RXN A;  4BY1 L;  4A3I L;  1B71 A;  1CAA A;  5MFZ A;  1I6H L;  3KYX A;  2A6H D;  2GMG A;  3PL5 A;  2XJV A;  1Z92 B;  4E6Y A;  1YUX A;  1PFY A;  1RDG A;  3I4N L;  4AR4 A;  3RYG A;  1T9P A;  2JA5 L;  3S2D L;  1SMW A;  1Y1W L;  3RZO L;  5AI2 A;  3LWV B;  4QIW P;  3HOV L;  2ERS A;  1LTL A;  2AQC A;  4XGH A;  1VZG A;  3S1N L;  1R0F A;  2Y0S P;  2PVX A;  5DM7 1;  1NXE A;  2EY4 E;  3S14 L;  1ZRP A;  3LWO B;  1WJV A;  3RZD L;  1SFO L;  4Y7N L;  1B13 A;  1BQ8 A;  1BQ9 A;  4K9F A;  4AI0 A;  3VPB E;  4A3M L;  3PZA A;  3P2A A;  2R92 L;  1LKP A;  1T9Q A;  3KYY A;  1QQT A;  3LWP B;  2E2H L;  3B0A B;  3FDJ A;  3S16 L;  2XJR A;  1IW7 D;  3HKZ P;  5DM6 1;  1QCV A;  2E2I L;  2PVE A;  2PSM C;  4A3L L;  2MS3 A;  3M4O L;  3IU3 I;  4X6A L;  2JA6 L;  3LNL A;  2CKA A;  1B2J A;  2RFK B;  2PPT A;  1RWD A;  4UY8 1;  4A93 L;  1YK4 A;  4POG A;  2JA7 L;  2NYD A;  3M3Y L;  3MQK B;  2Z3Q B;  2NVQ L;  3WWN B;  4BBR L;  5M5Y L;  1FHM A;  3HJY B;  1RYT A;  3KYW A;  5IP9 L;  4AI2 A;  4A3G L;  5MFP A;  1CAD A;  4TPU A;  5AI3 A;  4AHY A;  3S1M L;  1VZI A;  2C6A A;  2VL6 A;  2M6O A;  2RDV A;  3RZT A;  5C4X L;  4C2M 1;  2E2J L;  3LPE B;  2B63 L;  1BRF A;  3J7Y 1;  2AYJ A;  1WCM L;  2VUM L;  3LWQ B;  2XJT A;  7RXN A;  5IY0 A;  4JAG A;  2B5I D;  3GTK L;  1LKM A;  4V19 6;  1H7V A;  2A69 D;  2KN9 A;  2K2D A;  3KYU A;  2PYA A;  3S1R L;  1TWA L;  3PO2 L;  4POF A;  3GTG L;  1ODH A;  1IU5 A;  1R0H A;  2R7Z L;  3CQZ L;  3S2H L;  2A6E D;  1DX8 A;  2O5J D;  2LCQ A;  5GAE c;  2R93 L;  1SMU A;  1TWC L;  5EIN C;  3HOY L;  4C3H L;  4C3J L;  2HR5 A;  1R0G A;  4AHW A;  1RYQ A;  2WB1 P;  4AYB P;  4A3D L;  3H99 A;  4AR5 A;  3WWL A;  1JYB A;  2CR8 A;  3H3V M;  4A3K L;  1YUZ A;  1S30 A;  2NVY L;  2A68 D;  3ZG6 A;  3KYV A;  3S1Q L;  5M3F L;  4B8C D;  2V0E A;  5C44 L;  4A3E L;  8RXN A;  4BY7 L;  5MLC 3;  3H9C A;  4A3J L;  3H9B A;  5GAH c;  1IU6 A;  3RZ6 A;  1FHH A;  1S24 A;  3FKI L;  4G6B A;  3HOZ L;  3MSU A;  4BXX L;  2XJP A;  3J7Z 1;  3NFP I;  5FJ8 L;  1TWF L;  2NVX L;  4Y52 L;  2J9U B;  2V3B B;  3PKJ A;  1BE7 A;  1TWG L;  2APO B;  3PKI A;  2WAQ P;  3HOX L;  5JVH 1;  1TWH L;  6RXN A;  4JAE A;  2JI1 A;  1K83 L;  3A44 A;  5C4J L;  3GTJ L;  2L0Z A;  4AHX A;  5IP7 L;  3PIP 1;  3PWF A;  3GTM L;  3S15 L;  2JI2 A;  1NXG A;  2AUS B;  4YWL A;  4AR6 A;  4TVM A;  3S17 L; 
#chains in the Genus database with same CATH homology
 3HKZ P;  2WB1 P;  2JA8 L;  4AYB P;  4A3D L;  5FLM L;  2E2I L;  4A3L L;  5IYC L;  1I50 L;  3GTO L;  3M4O L;  3GTL L;  4X6A L;  2JA6 L;  1I3Q L;  1R9T L;  4A3F L;  3H3V M;  5IYB L;  4A3K L;  1Y1V L;  4A93 L;  5M5W L;  2NVY L;  2JA7 L;  4BY1 L;  4A3I L;  3M3Y L;  3S1Q L;  2NVQ L;  4BBR L;  5M3F L;  5M5Y L;  3I4M L;  1I6H L;  5M3M L;  4A3C L;  5IP9 L;  5C44 L;  4A3E L;  4A3G L;  4BY7 L;  4BBS L;  4A3J L;  3S1M L;  3I4N L;  2JA5 L;  3S2D L;  1Y1W L;  5C4X L;  3RZO L;  3FKI L;  3HOU L;  4C2M 1;  2E2J L;  3HOZ L;  4BXX L;  3GTQ L;  2B63 L;  3HOW L;  5FJ8 L;  1TWF L;  1WCM L;  2NVX L;  2VUM L;  4C3I L;  3GTP L;  4Y52 L;  4QIW P;  3HOV L;  3PO3 L;  3S1N L;  3GTK L;  1TWG L;  2Y0S P;  2YU9 L;  2NVT L;  2WAQ P;  3HOX L;  3S14 L;  3K7A L;  1TWH L;  4A3B L;  1K83 L;  3RZD L;  1TWA L;  5C4J L;  3GTJ L;  3S1R L;  1SFO L;  3PO2 L;  4Y7N L;  3GTG L;  5M5X L;  5IP7 L;  2R7Z L;  3CQZ L;  3S2H L;  3GTM L;  3S15 L;  5C3E L;  2R93 L;  1TWC L;  4A3M L;  3HOY L;  4C3H L;  3H0G L;  2R92 L;  4C3J L;  2E2H L;  3S17 L;  2PMZ P;  5IYD L;  3S16 L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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