1U7IA

Crystal structure of protein of unknown function pa1358 from pseudomonas aeruginosa
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
134
structure length
134
Chain Sequence
HMSARVRPFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRLGDQSVHCIDSHVRHAFDFTPAFSFFVDCESNAQIERLAEALSDGGKALMPLGDYGFSQRFAWLADRFGVSWQLNLAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein
publication title X-ray crystal structure of hypothetical protein PA1358 from Pseudomonas aeruginosa
rcsb
source organism Pseudomonas aeruginosa
total genus 29
structure length 134
sequence length 134
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06983 3-dmu-9_3-mt 3-demethylubiquinone-9 3-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.720.100 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 1u7iA01
3.30.720.110 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 1u7iA02
3ITWA 3VCXA 1U7IA 3OMSA 3SK1A 3BT3A 2KJZA
chains in the Genus database with same CATH superfamily
3ITWA 4GYYA 4N3BA 5AOXA 3PE4A 4N39A 3PE3A 4CDRA 2W9JA 4N3CA 3SK1A 1914A 3BT3A 2A90A 4UYKB 1E8OA 2FJBB 4GZ5A 4AY5A 1UJRA 2FFGA 1QMOE 4GZ6A 1U7IA 3OMSA 3TAXA 4XIFA 4UYJA 4AY6A 5AOXB 2K4NA 2RSFA 3VCXA 3GYXB 1JNRB 2FJAB 1E8OB 2X5HA 1JNZB 4N3AA 4GZ3A 1X4RA 2KJZA 2X5TA 3TU3B 3V3LA 4XI9A 4UYKA 2DK6A 5C1DA 2FJDB 4UYJB 5BNWA 4GYWA 2X5GA 4AKXB 2FJEB
chains in the Genus database with same CATH topology
3ITWA 4GYYA 4N3BA 5AOXA 3PE4A 4N39A 3PE3A 4CDRA 2W9JA 4N3CA 3SK1A 1914A 3BT3A 2A90A 4UYKB 1E8OA 2FJBB 4GZ5A 4AY5A 1UJRA 2FFGA 1QMOE 4GZ6A 1U7IA 3OMSA 3TAXA 4XIFA 4UYJA 4AY6A 5AOXB 2K4NA 2RSFA 3VCXA 3GYXB 1JNRB 2FJAB 1E8OB 2X5HA 1JNZB 4N3AA 4GZ3A 1X4RA 2KJZA 2X5TA 3TU3B 3V3LA 4XI9A 4UYKA 2DK6A 5C1DA 2FJDB 4UYJB 5BNWA 4GYWA 2X5GA 4AKXB 2FJEB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ITW A;  3VCX A;  1U7I A;  3OMS A;  3SK1 A;  3BT3 A;  2KJZ A; 
#chains in the Genus database with same CATH topology
 3ITW A;  4GYY A;  4N3B A;  5AOX A;  3PE4 A;  4N39 A;  3PE3 A;  4CDR A;  2W9J A;  4N3C A;  3SK1 A;  1914 A;  3BT3 A;  2A90 A;  4UYK B;  1E8O A;  2FJB B;  4GZ5 A;  4AY5 A;  1UJR A;  2FFG A;  1QMO E;  4GZ6 A;  1U7I A;  3OMS A;  3TAX A;  4XIF A;  4UYJ A;  4AY6 A;  5AOX B;  2K4N A;  2RSF A;  3VCX A;  3GYX B;  1JNR B;  2FJA B;  1E8O B;  2X5H A;  1JNZ B;  4N3A A;  4GZ3 A;  1X4R A;  2KJZ A;  2X5T A;  3TU3 B;  3V3L A;  4XI9 A;  4UYK A;  2DK6 A;  5C1D A;  2FJD B;  4UYJ B;  5BNW A;  4GYW A;  2X5G A;  4AKX B;  2FJE B; 
#chains in the Genus database with same CATH homology
 3ITW A;  4GYY A;  4N3B A;  5AOX A;  3PE4 A;  4N39 A;  3PE3 A;  4CDR A;  2W9J A;  4N3C A;  3SK1 A;  1914 A;  3BT3 A;  2A90 A;  4UYK B;  1E8O A;  2FJB B;  4GZ5 A;  4AY5 A;  1UJR A;  2FFG A;  1QMO E;  4GZ6 A;  1U7I A;  3OMS A;  3TAX A;  4XIF A;  4UYJ A;  4AY6 A;  5AOX B;  2K4N A;  2RSF A;  3VCX A;  3GYX B;  1JNR B;  2FJA B;  1E8O B;  2X5H A;  1JNZ B;  4N3A A;  4GZ3 A;  1X4R A;  2KJZ A;  2X5T A;  3TU3 B;  3V3L A;  4XI9 A;  4UYK A;  2DK6 A;  5C1D A;  2FJD B;  4UYJ B;  5BNW A;  4GYW A;  2X5G A;  4AKX B;  2FJE B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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