1U7QA

The solution structure of the nucleotide binding domain of kdpb
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
136
structure length
136
Chain Sequence
NRQASEFIPAQGVDEKTLADAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRMIRKGSVDAIRRHVEANGGHFPTDVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Potassium-transporting ATPase B chain
publication title Inter-domain motions of the N-domain of the KdpFABC complex, a P-type ATPase, are not driven by ATP-induced conformational changes.
pubmed doi rcsb
source organism Escherichia coli
total genus 33
structure length 136
sequence length 136
ec nomenclature ec 7.2.2.6: P-type K(+) transporter.
pdb deposition date 2004-08-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1110.10 Alpha Beta 3-Layer(aba) Sandwich Calcium-transporting ATPase, cytoplasmic domain N Calcium-transporting ATPase, cytoplasmic domain N 1u7qA00
1SU4A 5AVYA 5AW5A 5AVUA 1T5TA 3W5DA 2EARA 3NAMA 4BYGA 4H1WA 5AVRA 3FPBA 3AR5A 3AR9A 4RESA 3AR3A 3N8GA 3RFUA 1Q3IA 3WGVA 2ZBFA 2OA0A 4Y3UA 1MO7A 3B9BA 1SVJA 2C8KA 2YFYA 2KMXA 3NALA 5AVQA 4KYTA 3FPSA 5AVTA 3A1CA 5AW2A 5A3QA 1XP5A 2O9JA 3AR2A 3AR8A 4YCMA 4UMVA 4YCNA 2ZXEA 1U7QA 2YJ5A 2ZBGA 4RETA 2C88A 2KMVA 3KDPA 5AVSA 2ZBDA 2DQSA 3BA6A 3AR7A 1IWOA 3J7TA 5AW4A 4XOUA 5AW7A 2YJ4A 5A3RA 3A3YA 2YJ6A 1WPGA 3WGUA 1MO8A 3A1EA 4NABA 5AW8A 5AW0A 4J2TA 2BY4A 5AVZA 3A1DA 3SKYA 2ARFA 3W5CA 3W5BA 3B8EA 4UU0A 2IYEA 3B9RA 4UU1A 2ZBEA 3AR4A 3SKXA 1VFPA 2EAUA 3AR6A 4XE5A 3W5AA 4BBJA 5AW1A 5AW3A 2YJ3A 4HYTA 4BEWA 2A29A 2A00A 3GWIA 3N5KA 4BEVA 3TLMA 5AW9A 5AVXA 2C9MA 2EATA 2B8EA 5AVVA 3FGOA 3NANA 1T5SA 2AGVA 4YCLA 5AVWA 5A3SA 2C8LA 5AW6A
chains in the Genus database with same CATH superfamily
1SU4A 5AVYA 5AW5A 5AVUA 1T5TA 3W5DA 2EARA 3NAMA 4BYGA 4H1WA 5AVRA 3FPBA 3AR5A 3AR9A 4RESA 3AR3A 3N8GA 3RFUA 1Q3IA 3WGVA 2ZBFA 2OA0A 4Y3UA 1MO7A 3B9BA 1SVJA 2C8KA 2YFYA 2KMXA 3NALA 5AVQA 4KYTA 3FPSA 5AVTA 3A1CA 5AW2A 5A3QA 1XP5A 2O9JA 3AR2A 3AR8A 4YCMA 4UMVA 4YCNA 2ZXEA 1U7QA 2YJ5A 2ZBGA 4RETA 2C88A 2KMVA 3KDPA 5AVSA 2ZBDA 2DQSA 3BA6A 3AR7A 1IWOA 3J7TA 5AW4A 4XOUA 5AW7A 2YJ4A 5A3RA 3A3YA 2YJ6A 1WPGA 3WGUA 1MO8A 3A1EA 4NABA 5AW8A 5AW0A 4J2TA 2BY4A 5AVZA 3A1DA 3SKYA 2ARFA 3W5CA 3W5BA 3B8EA 4UU0A 2IYEA 3B9RA 4UU1A 2ZBEA 3AR4A 3SKXA 1VFPA 2EAUA 3AR6A 4XE5A 3W5AA 4BBJA 5AW1A 5AW3A 2YJ3A 4HYTA 4BEWA 2A29A 2A00A 3GWIA 3N5KA 4BEVA 3TLMA 5AW9A 5AVXA 2C9MA 2EATA 2B8EA 5AVVA 3FGOA 3NANA 1T5SA 2AGVA 4YCLA 5AVWA 5A3SA 2C8LA 5AW6A
chains in the Genus database with same CATH topology
1SU4A 5AVYA 5AW5A 5AVUA 1T5TA 3W5DA 2EARA 3NAMA 4BYGA 4H1WA 5AVRA 3FPBA 3AR5A 3AR9A 4RESA 3AR3A 3N8GA 3RFUA 1Q3IA 3WGVA 2ZBFA 2OA0A 4Y3UA 1MO7A 3B9BA 1SVJA 2C8KA 2YFYA 2KMXA 3NALA 5AVQA 4KYTA 3FPSA 5AVTA 3A1CA 5AW2A 5A3QA 1XP5A 2O9JA 3AR2A 3AR8A 4YCMA 4UMVA 4YCNA 2ZXEA 1U7QA 2YJ5A 2ZBGA 4RETA 2C88A 2KMVA 3KDPA 5AVSA 2ZBDA 2DQSA 3BA6A 3AR7A 1IWOA 3J7TA 5AW4A 4XOUA 5AW7A 2YJ4A 5A3RA 3A3YA 2YJ6A 1WPGA 3WGUA 1MO8A 3A1EA 4NABA 5AW8A 5AW0A 4J2TA 2BY4A 5AVZA 3A1DA 3SKYA 2ARFA 3W5CA 3W5BA 3B8EA 4UU0A 2IYEA 3B9RA 4UU1A 2ZBEA 3AR4A 3SKXA 1VFPA 2EAUA 3AR6A 4XE5A 3W5AA 4BBJA 5AW1A 5AW3A 2YJ3A 4HYTA 4BEWA 2A29A 2A00A 3GWIA 3N5KA 4BEVA 3TLMA 5AW9A 5AVXA 2C9MA 2EATA 2B8EA 5AVVA 3FGOA 3NANA 1T5SA 2AGVA 4YCLA 5AVWA 5A3SA 2C8LA 5AW6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SU4 A;  5AVY A;  5AW5 A;  5AVU A;  1T5T A;  3W5D A;  2EAR A;  3NAM A;  4BYG A;  4H1W A;  5AVR A;  3FPB A;  3AR5 A;  3AR9 A;  4RES A;  3AR3 A;  3N8G A;  3RFU A;  1Q3I A;  3WGV A;  2ZBF A;  2OA0 A;  4Y3U A;  1MO7 A;  3B9B A;  1SVJ A;  2C8K A;  2YFY A;  2KMX A;  3NAL A;  5AVQ A;  4KYT A;  3FPS A;  5AVT A;  3A1C A;  5AW2 A;  5A3Q A;  1XP5 A;  2O9J A;  3AR2 A;  3AR8 A;  4YCM A;  4UMV A;  4YCN A;  2ZXE A;  1U7Q A;  2YJ5 A;  2ZBG A;  4RET A;  2C88 A;  2KMV A;  3KDP A;  5AVS A;  2ZBD A;  2DQS A;  3BA6 A;  3AR7 A;  1IWO A;  3J7T A;  5AW4 A;  4XOU A;  5AW7 A;  2YJ4 A;  5A3R A;  3A3Y A;  2YJ6 A;  1WPG A;  3WGU A;  1MO8 A;  3A1E A;  4NAB A;  5AW8 A;  5AW0 A;  4J2T A;  2BY4 A;  5AVZ A;  3A1D A;  3SKY A;  2ARF A;  3W5C A;  3W5B A;  3B8E A;  4UU0 A;  2IYE A;  3B9R A;  4UU1 A;  2ZBE A;  3AR4 A;  3SKX A;  1VFP A;  2EAU A;  3AR6 A;  4XE5 A;  3W5A A;  4BBJ A;  5AW1 A;  5AW3 A;  2YJ3 A;  4HYT A;  4BEW A;  2A29 A;  2A00 A;  3GWI A;  3N5K A;  4BEV A;  3TLM A;  5AW9 A;  5AVX A;  2C9M A;  2EAT A;  2B8E A;  5AVV A;  3FGO A;  3NAN A;  1T5S A;  2AGV A;  4YCL A;  5AVW A;  5A3S A;  2C8L A;  5AW6 A; 
#chains in the Genus database with same CATH topology
 1SU4 A;  5AVY A;  5AW5 A;  5AVU A;  1T5T A;  3W5D A;  2EAR A;  3NAM A;  4BYG A;  4H1W A;  5AVR A;  3FPB A;  3AR5 A;  3AR9 A;  4RES A;  3AR3 A;  3N8G A;  3RFU A;  1Q3I A;  3WGV A;  2ZBF A;  2OA0 A;  4Y3U A;  1MO7 A;  3B9B A;  1SVJ A;  2C8K A;  2YFY A;  2KMX A;  3NAL A;  5AVQ A;  4KYT A;  3FPS A;  5AVT A;  3A1C A;  5AW2 A;  5A3Q A;  1XP5 A;  2O9J A;  3AR2 A;  3AR8 A;  4YCM A;  4UMV A;  4YCN A;  2ZXE A;  1U7Q A;  2YJ5 A;  2ZBG A;  4RET A;  2C88 A;  2KMV A;  3KDP A;  5AVS A;  2ZBD A;  2DQS A;  3BA6 A;  3AR7 A;  1IWO A;  3J7T A;  5AW4 A;  4XOU A;  5AW7 A;  2YJ4 A;  5A3R A;  3A3Y A;  2YJ6 A;  1WPG A;  3WGU A;  1MO8 A;  3A1E A;  4NAB A;  5AW8 A;  5AW0 A;  4J2T A;  2BY4 A;  5AVZ A;  3A1D A;  3SKY A;  2ARF A;  3W5C A;  3W5B A;  3B8E A;  4UU0 A;  2IYE A;  3B9R A;  4UU1 A;  2ZBE A;  3AR4 A;  3SKX A;  1VFP A;  2EAU A;  3AR6 A;  4XE5 A;  3W5A A;  4BBJ A;  5AW1 A;  5AW3 A;  2YJ3 A;  4HYT A;  4BEW A;  2A29 A;  2A00 A;  3GWI A;  3N5K A;  4BEV A;  3TLM A;  5AW9 A;  5AVX A;  2C9M A;  2EAT A;  2B8E A;  5AVV A;  3FGO A;  3NAN A;  1T5S A;  2AGV A;  4YCL A;  5AVW A;  5A3S A;  2C8L A;  5AW6 A; 
#chains in the Genus database with same CATH homology
 1SU4 A;  5AVY A;  5AW5 A;  5AVU A;  1T5T A;  3W5D A;  2EAR A;  3NAM A;  4BYG A;  4H1W A;  5AVR A;  3FPB A;  3AR5 A;  3AR9 A;  4RES A;  3AR3 A;  3N8G A;  3RFU A;  1Q3I A;  3WGV A;  2ZBF A;  2OA0 A;  4Y3U A;  1MO7 A;  3B9B A;  1SVJ A;  2C8K A;  2YFY A;  2KMX A;  3NAL A;  5AVQ A;  4KYT A;  3FPS A;  5AVT A;  3A1C A;  5AW2 A;  5A3Q A;  1XP5 A;  2O9J A;  3AR2 A;  3AR8 A;  4YCM A;  4UMV A;  4YCN A;  2ZXE A;  1U7Q A;  2YJ5 A;  2ZBG A;  4RET A;  2C88 A;  2KMV A;  3KDP A;  5AVS A;  2ZBD A;  2DQS A;  3BA6 A;  3AR7 A;  1IWO A;  3J7T A;  5AW4 A;  4XOU A;  5AW7 A;  2YJ4 A;  5A3R A;  3A3Y A;  2YJ6 A;  1WPG A;  3WGU A;  1MO8 A;  3A1E A;  4NAB A;  5AW8 A;  5AW0 A;  4J2T A;  2BY4 A;  5AVZ A;  3A1D A;  3SKY A;  2ARF A;  3W5C A;  3W5B A;  3B8E A;  4UU0 A;  2IYE A;  3B9R A;  4UU1 A;  2ZBE A;  3AR4 A;  3SKX A;  1VFP A;  2EAU A;  3AR6 A;  4XE5 A;  3W5A A;  4BBJ A;  5AW1 A;  5AW3 A;  2YJ3 A;  4HYT A;  4BEW A;  2A29 A;  2A00 A;  3GWI A;  3N5K A;  4BEV A;  3TLM A;  5AW9 A;  5AVX A;  2C9M A;  2EAT A;  2B8E A;  5AVV A;  3FGO A;  3NAN A;  1T5S A;  2AGV A;  4YCL A;  5AVW A;  5A3S A;  2C8L A;  5AW6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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