1UALA

Crystal structure of trna(m1g37)methyltransferase: insight into trna recognition
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
Knots found
sequence length
252
structure length
243
Chain Sequence
SHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNSLEHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (Guanine-N(1)-)-methyltransferase
publication title Crystal structure of tRNA(m(1)G37)methyltransferase: insights into tRNA recognition
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 70
structure length 243
sequence length 252
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2003-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 1ualA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1ualA01
3OIJA 4YQTA 2EGVA 4YQGA 4YVIA 4KGNA 4FAKA 3NK7A 4YQLA 3KTYA 4IG6A 3N4KA 2O3AA 1UAMA 1Z85A 1IPAA 4CNFA 4YQ0A 3AI9X 4YQBA 2EGWA 4XBOA 4YQPA 4CNEA 1UAJA 4YQSA 4YVGA 1VHYA 4YQRA 4CNDA 4KDZA 1X7PA 4YQ3A 4YPZA 3N4JA 5GMBA 3KNUA 1GZ0A 2QMMA 1V2XA 2V3KA 3BBDA 2V3JA 2I6DA 3L8UA 4YQ6A 3E5YA 3O7BA 4YQ4A 3BBHA 2HA8A 1V6ZA 4YQCA 3QUVA 1K3RA 4CNGA 4YQAA 3IC6A 1UALA 4YQOA 4YPWA 4JAKA 1VH0A 1P9PA 4PZKA 4YQ7A 3GYQA 4YPXA 4RG1A 1NXZA 4YQJA 4MCDA 4YQDA 4YQKA 5CO4A 1ZJRA 4H3ZA 3IEFA 4X3MA 4X3LA 4MCCA 4YVJA 4L69A 4JALA 4YQQA 3BBEA 1J85A 3ILKA 4J3CA 3OINA 2QWVA 1OY5A 4YQIA 5D9FA 3ONPA 5FAIA 1X7OA 4YQ1A 3AXZA 1UAKA 5GMCA 3NK6A 4YQ9A 4YQ8A 2YY8A 3KW2A 3OIIA 4YQ5A 1TO0A 3DCMX 4H3YA 1O6DA 4YVHA 5GM8A 1NS5A 4YPYA 2Z0YA 3AIAA 4MCBA 4YVKA 4E8BA 1VHKA 2CX8A 4YQNA 4YQ2A 1MXIA 3KY7A
chains in the Genus database with same CATH superfamily
1WRSR 4YQTA 2EGVA 3OIJA 4YQGA 4YVIA 4KGNA 4JWHA 4FAKA 1CO0A 4YQLA 3NK7A 3KTYA 4IG6A 3N4KA 2O3AA 1UAMA 1Z85A 1IPAA 4CNFA 3WRPA 4YQ0A 3AI9X 1ZT9A 4YQBA 2EGWA 4XBOA 4YQPA 1RCSA 4CNEA 1UAJA 4YQSA 4YVGA 1VHYA 4YQRA 4CNDA 4KDZA 1X7PA 4YQ3A 4YPZA 2XDIA 4JWFA 3N4JA 5GMBA 3KNUA 1GZ0A 2QMMA 1V2XA 2V3KA 3BBDA 2V3JA 2I6DA 3L8UA 4YQ6A 3E5YA 3O7BA 4YQ4A 3BBHA 4FMWA 2HA8A 1V6ZA 4YQCA 3QUVA 1K3RA 4CNGA 4YQAA 3IC6A 1UALA 4YQOA 4YPWA 4JAKA 1VH0A 1P9PA 4PZKA 4YQ7A 3GYQA 4YPXA 4RG1A 1NXZA 3KORA 4YQJA 4MCDA 4YQDA 1TRRA 4YQKA 2OZ9R 5CO4A 1ZJRA 4H3ZA 3IEFA 4X3MA 4X3LA 1MI7R 3FRWA 4MCCA 4YVJA 4L69A 3SSWN 4JALA 4YQQA 3BBEA 1JHGA 1J85A 3ILKA 4J3CA 3SSXN 3OINA 2QWVA 1OY5A 4YQIA 1WRTR 5D9FA 4JWJA 3ONPA 1TROA 5FAIA 1X7OA 4YQ1A 3AXZA 1WRPR 1UAKA 5GMCA 3NK6A 4YQ9A 4YQ8A 2YY8A 3KW2A 3OIIA 4YQ5A 1TO0A 3DCMX 4H3YA 1O6DA 4JWGA 4YVHA 5GM8A 1NS5A 4YPYA 2Z0YA 3AIAA 4MCBA 4YVKA 4E8BA 3G1CA 1VHKA 2CX8A 4YQNA 4YQ2A 1MXIA 3KY7A
chains in the Genus database with same CATH topology
3OIJA 4YQTA 2EGVA 4YQGA 4YVIA 4KGNA 4JWHA 4FAKA 3NK7A 4YQLA 3KTYA 4IG6A 3N4KA 2O3AA 1UAMA 1Z85A 1IPAA 4CNFA 4YQ0A 3AI9X 4YQBA 2EGWA 4XBOA 4YQPA 4CNEA 1UAJA 4YQSA 4YVGA 1VHYA 4YQRA 4CNDA 4KDZA 1X7PA 4YQ3A 4YPZA 4JWFA 3N4JA 5GMBA 3KNUA 1GZ0A 2QMMA 1V2XA 2V3KA 3BBDA 2V3JA 2I6DA 3L8UA 4YQ6A 3E5YA 3O7BA 4YQ4A 3BBHA 4FMWA 2HA8A 1V6ZA 4YQCA 3QUVA 1K3RA 4CNGA 4YQAA 3IC6A 1UALA 4YQOA 4YPWA 4JAKA 1VH0A 1P9PA 4PZKA 4YQ7A 3GYQA 4YPXA 4RG1A 1NXZA 4YQJA 4MCDA 4YQDA 4YQKA 5CO4A 1ZJRA 4H3ZA 3IEFA 4X3MA 4X3LA 4MCCA 4YVJA 4L69A 4JALA 4YQQA 3BBEA 1J85A 3ILKA 4J3CA 3OINA 2QWVA 1OY5A 4YQIA 5D9FA 4JWJA 3ONPA 5FAIA 1X7OA 4YQ1A 3AXZA 1UAKA 5GMCA 3NK6A 4YQ9A 4YQ8A 2YY8A 3KW2A 3OIIA 4YQ5A 1TO0A 3DCMX 4H3YA 1O6DA 4JWGA 4YVHA 5GM8A 1NS5A 4YPYA 2Z0YA 3AIAA 4MCBA 4YVKA 4E8BA 1VHKA 2CX8A 4YQNA 4YQ2A 1MXIA 3KY7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OIJ A;  4YQT A;  2EGV A;  4YQG A;  4YVI A;  4KGN A;  4FAK A;  3NK7 A;  4YQL A;  3KTY A;  4IG6 A;  3N4K A;  2O3A A;  1UAM A;  1Z85 A;  1IPA A;  4CNF A;  4YQ0 A;  3AI9 X;  4YQB A;  2EGW A;  4XBO A;  4YQP A;  4CNE A;  1UAJ A;  4YQS A;  4YVG A;  1VHY A;  4YQR A;  4CND A;  4KDZ A;  1X7P A;  4YQ3 A;  4YPZ A;  3N4J A;  5GMB A;  3KNU A;  1GZ0 A;  2QMM A;  1V2X A;  2V3K A;  3BBD A;  2V3J A;  2I6D A;  3L8U A;  4YQ6 A;  3E5Y A;  3O7B A;  4YQ4 A;  3BBH A;  2HA8 A;  1V6Z A;  4YQC A;  3QUV A;  1K3R A;  4CNG A;  4YQA A;  3IC6 A;  1UAL A;  4YQO A;  4YPW A;  4JAK A;  1VH0 A;  1P9P A;  4PZK A;  4YQ7 A;  3GYQ A;  4YPX A;  4RG1 A;  1NXZ A;  4YQJ A;  4MCD A;  4YQD A;  4YQK A;  5CO4 A;  1ZJR A;  4H3Z A;  3IEF A;  4X3M A;  4X3L A;  4MCC A;  4YVJ A;  4L69 A;  4JAL A;  4YQQ A;  3BBE A;  1J85 A;  3ILK A;  4J3C A;  3OIN A;  2QWV A;  1OY5 A;  4YQI A;  5D9F A;  3ONP A;  5FAI A;  1X7O A;  4YQ1 A;  3AXZ A;  1UAK A;  5GMC A;  3NK6 A;  4YQ9 A;  4YQ8 A;  2YY8 A;  3KW2 A;  3OII A;  4YQ5 A;  1TO0 A;  3DCM X;  4H3Y A;  1O6D A;  4YVH A;  5GM8 A;  1NS5 A;  4YPY A;  2Z0Y A;  3AIA A;  4MCB A;  4YVK A;  4E8B A;  1VHK A;  2CX8 A;  4YQN A;  4YQ2 A;  1MXI A;  3KY7 A; 
#chains in the Genus database with same CATH topology
 1WRS R;  4YQT A;  2EGV A;  3OIJ A;  4YQG A;  4YVI A;  4KGN A;  4JWH A;  4FAK A;  1CO0 A;  4YQL A;  3NK7 A;  3KTY A;  4IG6 A;  3N4K A;  2O3A A;  1UAM A;  1Z85 A;  1IPA A;  4CNF A;  3WRP A;  4YQ0 A;  3AI9 X;  1ZT9 A;  4YQB A;  2EGW A;  4XBO A;  4YQP A;  1RCS A;  4CNE A;  1UAJ A;  4YQS A;  4YVG A;  1VHY A;  4YQR A;  4CND A;  4KDZ A;  1X7P A;  4YQ3 A;  4YPZ A;  2XDI A;  4JWF A;  3N4J A;  5GMB A;  3KNU A;  1GZ0 A;  2QMM A;  1V2X A;  2V3K A;  3BBD A;  2V3J A;  2I6D A;  3L8U A;  4YQ6 A;  3E5Y A;  3O7B A;  4YQ4 A;  3BBH A;  4FMW A;  2HA8 A;  1V6Z A;  4YQC A;  3QUV A;  1K3R A;  4CNG A;  4YQA A;  3IC6 A;  1UAL A;  4YQO A;  4YPW A;  4JAK A;  1VH0 A;  1P9P A;  4PZK A;  4YQ7 A;  3GYQ A;  4YPX A;  4RG1 A;  1NXZ A;  3KOR A;  4YQJ A;  4MCD A;  4YQD A;  1TRR A;  4YQK A;  2OZ9 R;  5CO4 A;  1ZJR A;  4H3Z A;  3IEF A;  4X3M A;  4X3L A;  1MI7 R;  3FRW A;  4MCC A;  4YVJ A;  4L69 A;  3SSW N;  4JAL A;  4YQQ A;  3BBE A;  1JHG A;  1J85 A;  3ILK A;  4J3C A;  3SSX N;  3OIN A;  2QWV A;  1OY5 A;  4YQI A;  1WRT R;  5D9F A;  4JWJ A;  3ONP A;  1TRO A;  5FAI A;  1X7O A;  4YQ1 A;  3AXZ A;  1WRP R;  1UAK A;  5GMC A;  3NK6 A;  4YQ9 A;  4YQ8 A;  2YY8 A;  3KW2 A;  3OII A;  4YQ5 A;  1TO0 A;  3DCM X;  4H3Y A;  1O6D A;  4JWG A;  4YVH A;  5GM8 A;  1NS5 A;  4YPY A;  2Z0Y A;  3AIA A;  4MCB A;  4YVK A;  4E8B A;  3G1C A;  1VHK A;  2CX8 A;  4YQN A;  4YQ2 A;  1MXI A;  3KY7 A; 
#chains in the Genus database with same CATH homology
 3OIJ A;  4YQT A;  2EGV A;  4YQG A;  4YVI A;  4KGN A;  4JWH A;  4FAK A;  3NK7 A;  4YQL A;  3KTY A;  4IG6 A;  3N4K A;  2O3A A;  1UAM A;  1Z85 A;  1IPA A;  4CNF A;  4YQ0 A;  3AI9 X;  4YQB A;  2EGW A;  4XBO A;  4YQP A;  4CNE A;  1UAJ A;  4YQS A;  4YVG A;  1VHY A;  4YQR A;  4CND A;  4KDZ A;  1X7P A;  4YQ3 A;  4YPZ A;  4JWF A;  3N4J A;  5GMB A;  3KNU A;  1GZ0 A;  2QMM A;  1V2X A;  2V3K A;  3BBD A;  2V3J A;  2I6D A;  3L8U A;  4YQ6 A;  3E5Y A;  3O7B A;  4YQ4 A;  3BBH A;  4FMW A;  2HA8 A;  1V6Z A;  4YQC A;  3QUV A;  1K3R A;  4CNG A;  4YQA A;  3IC6 A;  1UAL A;  4YQO A;  4YPW A;  4JAK A;  1VH0 A;  1P9P A;  4PZK A;  4YQ7 A;  3GYQ A;  4YPX A;  4RG1 A;  1NXZ A;  4YQJ A;  4MCD A;  4YQD A;  4YQK A;  5CO4 A;  1ZJR A;  4H3Z A;  3IEF A;  4X3M A;  4X3L A;  4MCC A;  4YVJ A;  4L69 A;  4JAL A;  4YQQ A;  3BBE A;  1J85 A;  3ILK A;  4J3C A;  3OIN A;  2QWV A;  1OY5 A;  4YQI A;  5D9F A;  4JWJ A;  3ONP A;  5FAI A;  1X7O A;  4YQ1 A;  3AXZ A;  1UAK A;  5GMC A;  3NK6 A;  4YQ9 A;  4YQ8 A;  2YY8 A;  3KW2 A;  3OII A;  4YQ5 A;  1TO0 A;  3DCM X;  4H3Y A;  1O6D A;  4JWG A;  4YVH A;  5GM8 A;  1NS5 A;  4YPY A;  2Z0Y A;  3AIA A;  4MCB A;  4YVK A;  4E8B A;  1VHK A;  2CX8 A;  4YQN A;  4YQ2 A;  1MXI A;  3KY7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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