1UE0A

Isoleucyl-trna synthetase editing domain complexed with l-valine
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
181
structure length
181
Chain Sequence
QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGFLFKEES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Isoleucyl-tRNA synthetase
publication title Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 50
structure length 181
sequence length 181
chains with identical sequence B
ec nomenclature ec 6.1.1.5: Isoleucine--tRNA ligase.
pdb deposition date 2003-05-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 1ue0A00
4K48A 1WK8A 1ILEA 2AJHA 5AGRA 1WNZA 4ARCA 3PZ6A 3ZJTA 5AGJA 1QU2A 2WFEA 3O0AA 1FFYA 1UDZA 4ARIA 2AJGA 4AQ7A 1WNYA 2WFGA 1OBHA 1WK9A 2WFDA 2V0GA 3ZJUA 1H3NA 1OBCA 1WKAA 3ZGZA 2V0CA 5AGSA 2BTEA 3ZJVA 1WKBA 3PZ5A 1JZQA 1UE0A 3PZ0A 5AGHA 5AGIA 1WZ2A 5AGTA 4K47A 4CQNA 1JZSA 2BYTA 1GAXA 2AJIA 4AS1A 1QU3A 1IVSA
chains in the Genus database with same CATH superfamily
4K48A 1WK8A 1ILEA 2AJHA 5AGRA 1WNZA 4ARCA 3PZ6A 3ZJTA 5AGJA 1QU2A 2WFEA 3O0AA 1FFYA 1UDZA 4ARIA 2AJGA 4AQ7A 1WNYA 2WFGA 1OBHA 1WK9A 2WFDA 2V0GA 3ZJUA 1H3NA 1OBCA 1WKAA 3ZGZA 2V0CA 5AGSA 2BTEA 3ZJVA 1WKBA 3PZ5A 1JZQA 1UE0A 3PZ0A 5AGHA 5AGIA 1WZ2A 5AGTA 4K47A 4CQNA 1JZSA 2BYTA 1GAXA 2AJIA 4AS1A 1QU3A 1IVSA
chains in the Genus database with same CATH topology
4K48A 1WK8A 1ILEA 2AJHA 5AGRA 1WNZA 4ARCA 3PZ6A 3ZJTA 5AGJA 1QU2A 2WFEA 3O0AA 1FFYA 1UDZA 4ARIA 2AJGA 4AQ7A 1WNYA 2WFGA 1OBHA 1WK9A 2WFDA 2V0GA 3ZJUA 1H3NA 1OBCA 1WKAA 3ZGZA 2V0CA 5AGSA 2BTEA 3ZJVA 1WKBA 3PZ5A 1JZQA 1UE0A 3PZ0A 5AGHA 5AGIA 1WZ2A 5AGTA 4K47A 4CQNA 1JZSA 2BYTA 1GAXA 2AJIA 4AS1A 1QU3A 1IVSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K48 A;  1WK8 A;  1ILE A;  2AJH A;  5AGR A;  1WNZ A;  4ARC A;  3PZ6 A;  3ZJT A;  5AGJ A;  1QU2 A;  2WFE A;  3O0A A;  1FFY A;  1UDZ A;  4ARI A;  2AJG A;  4AQ7 A;  1WNY A;  2WFG A;  1OBH A;  1WK9 A;  2WFD A;  2V0G A;  3ZJU A;  1H3N A;  1OBC A;  1WKA A;  3ZGZ A;  2V0C A;  5AGS A;  2BTE A;  3ZJV A;  1WKB A;  3PZ5 A;  1JZQ A;  1UE0 A;  3PZ0 A;  5AGH A;  5AGI A;  1WZ2 A;  5AGT A;  4K47 A;  4CQN A;  1JZS A;  2BYT A;  1GAX A;  2AJI A;  4AS1 A;  1QU3 A;  1IVS A; 
#chains in the Genus database with same CATH topology
 4K48 A;  1WK8 A;  1ILE A;  2AJH A;  5AGR A;  1WNZ A;  4ARC A;  3PZ6 A;  3ZJT A;  5AGJ A;  1QU2 A;  2WFE A;  3O0A A;  1FFY A;  1UDZ A;  4ARI A;  2AJG A;  4AQ7 A;  1WNY A;  2WFG A;  1OBH A;  1WK9 A;  2WFD A;  2V0G A;  3ZJU A;  1H3N A;  1OBC A;  1WKA A;  3ZGZ A;  2V0C A;  5AGS A;  2BTE A;  3ZJV A;  1WKB A;  3PZ5 A;  1JZQ A;  1UE0 A;  3PZ0 A;  5AGH A;  5AGI A;  1WZ2 A;  5AGT A;  4K47 A;  4CQN A;  1JZS A;  2BYT A;  1GAX A;  2AJI A;  4AS1 A;  1QU3 A;  1IVS A; 
#chains in the Genus database with same CATH homology
 4K48 A;  1WK8 A;  1ILE A;  2AJH A;  5AGR A;  1WNZ A;  4ARC A;  3PZ6 A;  3ZJT A;  5AGJ A;  1QU2 A;  2WFE A;  3O0A A;  1FFY A;  1UDZ A;  4ARI A;  2AJG A;  4AQ7 A;  1WNY A;  2WFG A;  1OBH A;  1WK9 A;  2WFD A;  2V0G A;  3ZJU A;  1H3N A;  1OBC A;  1WKA A;  3ZGZ A;  2V0C A;  5AGS A;  2BTE A;  3ZJV A;  1WKB A;  3PZ5 A;  1JZQ A;  1UE0 A;  3PZ0 A;  5AGH A;  5AGI A;  1WZ2 A;  5AGT A;  4K47 A;  4CQN A;  1JZS A;  2BYT A;  1GAX A;  2AJI A;  4AS1 A;  1QU3 A;  1IVS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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