1UF5A

Crystal structure of c171a/v236a mutant of n-carbamyl-d-amino acid amidohydrolase complexed with n-carbamyl-d-methionine
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
303
structure length
303
Chain Sequence
TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords N-carbamyl-D-amino acid amidohydrolase
publication title Crystal structure of C171A/V236A mutant of N-carbamyl-D-amino acid amidohydrolase
rcsb
source organism Agrobacterium sp.
total genus 104
structure length 303
sequence length 303
chains with identical sequence B
ec nomenclature ec 3.5.1.77: N-carbamoyl-D-amino-acid hydrolase.
pdb deposition date 2003-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 1uf5A00
2E2LA 4CYYA 1F89A 1UF7A 4GYNA 4LF0A 4KZFA 2DYVA 1FO6A 1ERZA 2GGLA 4HGDA 2VHIA 3IW3A 4F4HA 5H8KA 4IZWA 3SDBA 3SYTA 1UF4A 3N05A 4HG3A 1UF8A 1J31A 2E2KA 3P8KA 4IZTA 1UF5A 4CYFA 3ILVA 5JQNA 3DLAA 2E11A 4H5UA 1EMSA 3KI8A 3KLCA 3HKXA 5H8LA 4HG5A 2UXYA 5KHAA 3SEQA 2VHHA 3WUYA 3IVZA 4IZSA 2DYUA 2W1VA 4IZUA 5H8IA 5H8JA 2GGKA 2PLQA 4IZVA 3SEZA 4CYGA 4GYLA 3SZGA
chains in the Genus database with same CATH superfamily
2E2LA 4CYYA 1F89A 1UF7A 4GYNA 4LF0A 4KZFA 2DYVA 1FO6A 1ERZA 2GGLA 4HGDA 2VHIA 3IW3A 4F4HA 5H8KA 4IZWA 3SDBA 3SYTA 1UF4A 3N05A 4HG3A 1UF8A 1J31A 2E2KA 3P8KA 4IZTA 1UF5A 4CYFA 3ILVA 5JQNA 3DLAA 2E11A 4H5UA 1EMSA 3KI8A 3KLCA 3HKXA 5H8LA 4HG5A 2UXYA 5KHAA 3SEQA 2VHHA 3WUYA 3IVZA 4IZSA 2DYUA 2W1VA 4IZUA 5H8IA 5H8JA 2GGKA 2PLQA 4IZVA 3SEZA 4CYGA 4GYLA 3SZGA
chains in the Genus database with same CATH topology
2E2LA 4CYYA 1F89A 1UF7A 4GYNA 4LF0A 4KZFA 2DYVA 1FO6A 1ERZA 2GGLA 4HGDA 2VHIA 3IW3A 4F4HA 5H8KA 4IZWA 3SDBA 3SYTA 1UF4A 3N05A 4HG3A 1UF8A 1J31A 2E2KA 3P8KA 4IZTA 1UF5A 4CYFA 3ILVA 5JQNA 3DLAA 2E11A 4H5UA 1EMSA 3KI8A 3KLCA 3HKXA 5H8LA 4HG5A 2UXYA 5KHAA 3SEQA 2VHHA 3WUYA 3IVZA 4IZSA 2DYUA 2W1VA 4IZUA 5H8IA 5H8JA 2GGKA 2PLQA 4IZVA 3SEZA 4CYGA 4GYLA 3SZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E2L A;  4CYY A;  1F89 A;  1UF7 A;  4GYN A;  4LF0 A;  4KZF A;  2DYV A;  1FO6 A;  1ERZ A;  2GGL A;  4HGD A;  2VHI A;  3IW3 A;  4F4H A;  5H8K A;  4IZW A;  3SDB A;  3SYT A;  1UF4 A;  3N05 A;  4HG3 A;  1UF8 A;  1J31 A;  2E2K A;  3P8K A;  4IZT A;  1UF5 A;  4CYF A;  3ILV A;  5JQN A;  3DLA A;  2E11 A;  4H5U A;  1EMS A;  3KI8 A;  3KLC A;  3HKX A;  5H8L A;  4HG5 A;  2UXY A;  5KHA A;  3SEQ A;  2VHH A;  3WUY A;  3IVZ A;  4IZS A;  2DYU A;  2W1V A;  4IZU A;  5H8I A;  5H8J A;  2GGK A;  2PLQ A;  4IZV A;  3SEZ A;  4CYG A;  4GYL A;  3SZG A; 
#chains in the Genus database with same CATH topology
 2E2L A;  4CYY A;  1F89 A;  1UF7 A;  4GYN A;  4LF0 A;  4KZF A;  2DYV A;  1FO6 A;  1ERZ A;  2GGL A;  4HGD A;  2VHI A;  3IW3 A;  4F4H A;  5H8K A;  4IZW A;  3SDB A;  3SYT A;  1UF4 A;  3N05 A;  4HG3 A;  1UF8 A;  1J31 A;  2E2K A;  3P8K A;  4IZT A;  1UF5 A;  4CYF A;  3ILV A;  5JQN A;  3DLA A;  2E11 A;  4H5U A;  1EMS A;  3KI8 A;  3KLC A;  3HKX A;  5H8L A;  4HG5 A;  2UXY A;  5KHA A;  3SEQ A;  2VHH A;  3WUY A;  3IVZ A;  4IZS A;  2DYU A;  2W1V A;  4IZU A;  5H8I A;  5H8J A;  2GGK A;  2PLQ A;  4IZV A;  3SEZ A;  4CYG A;  4GYL A;  3SZG A; 
#chains in the Genus database with same CATH homology
 2E2L A;  4CYY A;  1F89 A;  1UF7 A;  4GYN A;  4LF0 A;  4KZF A;  2DYV A;  1FO6 A;  1ERZ A;  2GGL A;  4HGD A;  2VHI A;  3IW3 A;  4F4H A;  5H8K A;  4IZW A;  3SDB A;  3SYT A;  1UF4 A;  3N05 A;  4HG3 A;  1UF8 A;  1J31 A;  2E2K A;  3P8K A;  4IZT A;  1UF5 A;  4CYF A;  3ILV A;  5JQN A;  3DLA A;  2E11 A;  4H5U A;  1EMS A;  3KI8 A;  3KLC A;  3HKX A;  5H8L A;  4HG5 A;  2UXY A;  5KHA A;  3SEQ A;  2VHH A;  3WUY A;  3IVZ A;  4IZS A;  2DYU A;  2W1V A;  4IZU A;  5H8I A;  5H8J A;  2GGK A;  2PLQ A;  4IZV A;  3SEZ A;  4CYG A;  4GYL A;  3SZG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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