1UHGA

Crystal structure of s-ovalbumin at 1.9 angstrom resolution
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
385
structure length
378
Chain Sequence
GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTESKPVQMMYQIGLFRVASMASEKMKILELPFAGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAELKISQAVHAAHAEINEAGREVVGAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Allergen
molecule keywords Ovalbumin
publication title Crystal Structure of S-ovalbumin as a Non-loop-inserted Thermostabilized Serpin Form
pubmed doi rcsb
total genus 115
structure length 378
sequence length 385
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1uhgA01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1uhgA02
2WXXA 1E04I 4IC0A 2HIJI 4AU3A 4IF8A 1JJOC 9APIA 4KDSA 1DZGL 1OPHA 5EI0A 1XU8A 3FGQA 3Q02A 4DY0A 4AU2A 5HGCA 2OL2A 2WXZC 2H4QA 5CE0A 1HLEA 1DZHI 1SNGA 1XQJA 2BEHL 2WY1A 3KCGI 4P0OA 3CVMA 4G8OA 2OAYA 3F02A 2VDYA 3T1PA 5INWA 1F0CA 1K9OI 2V95A 1ATUA 2H4RA 4AJTA 2CEOA 2ZNHA 1OVAC 1BY7A 1C5GA 2D26A 2ARQA 2B5TI 1OYHI 3OZQA 1ATTA 2B4XI 4AJUA 1A7CA 1JTIA 1OC0A 4Y40A 5C98A 8APIA 3NDFA 1JVQI 4CAAA 5CDZA 2WY0C 2WXZA 1YXAA 4DTEA 1BR8I 1C8OA 4AU4A 2RIWA 4BB2A 1T1FA 1ATHA 1SEKA 2RIVA 2ZV6A 1LJ5A 3H5CA 1DZHL 7APIA 4YIAA 1UHGA 3EOXA 1OVAA 1KCTA 1DB2A 1JMOA 5IO1A 4AU3B 4GA7A 3DRUA 1E03I 4EB1I 1PSIA 1IMVA 2XN5A 3Q03A 3DY0A 1NQ9I 1DZGI 1DVMA 3R4LA 1EZXA 1LK6I 3ZHAA 1AS4A 4AQHA 2HIJL 1OVAB 2R9YA 1SR5A 1M93B 2GD4C 2HI9A 4R9IA 1MTPA 1DVNA 3CWMA 1JRRA 2ACHA 4C49A 3STOA 1JMJA 2XN7A 2DUTA 2PEFA 4DY7C 4P0FA 2VH4A 1E05I 3LW2A 1AZXI 1ANTI 3NDAA 2WXYC 2QUGA 3DRMA 3F1SA 4RSQA 4EB1L 1TB6I 2VDXA 2WXWA 3UT3A 4Y3KA 3VVJA 2XN6A 1OYHL 3EVJI 1OO8A 1HP7A 2B4XL 1IZ2A 2PEEA 2BEHI 1R1LI 3PB1I 9PAIA 1LQ8A 3CWLA 1XQGA 1QMNA 3NDDA 1B3KA 1QMBA 4G8RA 4X30A 3DLWA 4PYWA 5BRRI 4RO9A 4ROAA 3F5NA 1QLPA 2ANTI 3LE2A 3CAAA 4ROBA 4ZK3A 2XN3A 5CDXA 4ZK0A 1WZ9A 4C41A 3B9FI 3PZFA 2ARRA 3NE4A 1D5SA 2H4PA 4AFXA
chains in the Genus database with same CATH superfamily
2WXXA 1E04I 4IC0A 2HIJI 4AU3A 4IF8A 1JJOC 9APIA 4KDSA 1DZGL 1OPHA 5EI0A 1XU8A 3FGQA 3Q02A 4DY0A 4AU2A 5HGCA 2OL2A 2WXZC 2H4QA 5CE0A 1HLEA 1DZHI 1SNGA 1XQJA 2BEHL 2WY1A 3KCGI 4P0OA 3CVMA 4G8OA 2OAYA 3F02A 2VDYA 3T1PA 5INWA 1F0CA 1K9OI 2V95A 1ATUA 2H4RA 4AJTA 2CEOA 2ZNHA 1OVAC 1BY7A 1C5GA 2D26A 2ARQA 2B5TI 1OYHI 3OZQA 1ATTA 2B4XI 4AJUA 1A7CA 1JTIA 1OC0A 4Y40A 5C98A 8APIA 3NDFA 1JVQI 4CAAA 5CDZA 2WY0C 2WXZA 1YXAA 4DTEA 1BR8I 1C8OA 4AU4A 2RIWA 4BB2A 1T1FA 1ATHA 1SEKA 2RIVA 2ZV6A 1LJ5A 3H5CA 1DZHL 7APIA 4YIAA 1UHGA 3EOXA 1OVAA 1KCTA 1DB2A 1JMOA 5IO1A 4AU3B 4GA7A 3DRUA 1E03I 4EB1I 1PSIA 1IMVA 2XN5A 3Q03A 3DY0A 1NQ9I 1DZGI 1DVMA 3R4LA 1EZXA 1LK6I 3ZHAA 1AS4A 4AQHA 2HIJL 1OVAB 2R9YA 1SR5A 1M93B 2GD4C 2HI9A 4R9IA 1MTPA 1DVNA 3CWMA 1JRRA 2ACHA 4C49A 3STOA 1JMJA 2XN7A 2DUTA 2PEFA 4DY7C 4P0FA 2VH4A 1E05I 3LW2A 1AZXI 1ANTI 3NDAA 2WXYC 2QUGA 3DRMA 3F1SA 4RSQA 4EB1L 1TB6I 2VDXA 2WXWA 3UT3A 4Y3KA 3VVJA 2XN6A 1OYHL 3EVJI 1OO8A 1HP7A 2B4XL 1IZ2A 2PEEA 2BEHI 1R1LI 3PB1I 9PAIA 1LQ8A 3CWLA 1XQGA 1QMNA 3NDDA 1B3KA 1QMBA 4G8RA 4X30A 3DLWA 4PYWA 5BRRI 4RO9A 4ROAA 3F5NA 1QLPA 2ANTI 3LE2A 3CAAA 4ROBA 4ZK3A 2XN3A 5CDXA 4ZK0A 1WZ9A 4C41A 3B9FI 3PZFA 2ARRA 3NE4A 1D5SA 2H4PA 4AFXA
chains in the Genus database with same CATH topology
2WXXA 1E04I 4IC0A 2HIJI 4AU3A 4IF8A 1JJOC 9APIA 4KDSA 1DZGL 1OPHA 5EI0A 1XU8A 3FGQA 3Q02A 4DY0A 4AU2A 5HGCA 2OL2A 2WXZC 2H4QA 5CE0A 1HLEA 1DZHI 1SNGA 1XQJA 2BEHL 2WY1A 3KCGI 4P0OA 3CVMA 4G8OA 2OAYA 3F02A 2VDYA 3T1PA 5INWA 1F0CA 1K9OI 2V95A 1ATUA 2H4RA 4AJTA 2CEOA 2ZNHA 1OVAC 1BY7A 1C5GA 2D26A 2ARQA 2B5TI 1OYHI 3OZQA 1ATTA 2B4XI 4AJUA 1A7CA 1JTIA 1OC0A 4Y40A 5C98A 8APIA 3NDFA 1JVQI 4CAAA 5CDZA 2WY0C 2WXZA 1YXAA 4DTEA 1BR8I 1C8OA 4AU4A 2RIWA 4BB2A 1T1FA 1ATHA 1SEKA 2RIVA 2ZV6A 1LJ5A 3H5CA 1DZHL 7APIA 4YIAA 1UHGA 3EOXA 1OVAA 1KCTA 1DB2A 1JMOA 5IO1A 4AU3B 4GA7A 3DRUA 1E03I 4EB1I 1PSIA 1IMVA 2XN5A 3Q03A 3DY0A 1NQ9I 1DZGI 1DVMA 3R4LA 1EZXA 1LK6I 3ZHAA 1AS4A 4AQHA 2HIJL 1OVAB 2R9YA 1SR5A 1M93B 2GD4C 2HI9A 4R9IA 1MTPA 1DVNA 3CWMA 1JRRA 2ACHA 4C49A 3STOA 1JMJA 2XN7A 2DUTA 2PEFA 4DY7C 4P0FA 2VH4A 1E05I 3LW2A 1AZXI 1ANTI 3NDAA 2WXYC 2QUGA 3DRMA 3F1SA 4RSQA 4EB1L 1TB6I 2VDXA 2WXWA 3UT3A 4Y3KA 3VVJA 2XN6A 1OYHL 3EVJI 1OO8A 1HP7A 2B4XL 1IZ2A 2PEEA 2BEHI 1R1LI 3PB1I 9PAIA 1LQ8A 3CWLA 1XQGA 1QMNA 3NDDA 1B3KA 1QMBA 4G8RA 4X30A 3DLWA 4PYWA 5BRRI 4RO9A 4ROAA 3F5NA 1QLPA 2ANTI 3LE2A 3CAAA 4ROBA 4ZK3A 2XN3A 5CDXA 4ZK0A 1WZ9A 4C41A 3B9FI 3PZFA 2ARRA 3NE4A 1D5SA 2H4PA 4AFXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WXX A;  1E04 I;  4IC0 A;  2HIJ I;  4AU3 A;  4IF8 A;  1JJO C;  9API A;  4KDS A;  1DZG L;  1OPH A;  5EI0 A;  1XU8 A;  3FGQ A;  3Q02 A;  4DY0 A;  4AU2 A;  5HGC A;  2OL2 A;  2WXZ C;  2H4Q A;  5CE0 A;  1HLE A;  1DZH I;  1SNG A;  1XQJ A;  2BEH L;  2WY1 A;  3KCG I;  4P0O A;  3CVM A;  4G8O A;  2OAY A;  3F02 A;  2VDY A;  3T1P A;  5INW A;  1F0C A;  1K9O I;  2V95 A;  1ATU A;  2H4R A;  4AJT A;  2CEO A;  2ZNH A;  1OVA C;  1BY7 A;  1C5G A;  2D26 A;  2ARQ A;  2B5T I;  1OYH I;  3OZQ A;  1ATT A;  2B4X I;  4AJU A;  1A7C A;  1JTI A;  1OC0 A;  4Y40 A;  5C98 A;  8API A;  3NDF A;  1JVQ I;  4CAA A;  5CDZ A;  2WY0 C;  2WXZ A;  1YXA A;  4DTE A;  1BR8 I;  1C8O A;  4AU4 A;  2RIW A;  4BB2 A;  1T1F A;  1ATH A;  1SEK A;  2RIV A;  2ZV6 A;  1LJ5 A;  3H5C A;  1DZH L;  7API A;  4YIA A;  1UHG A;  3EOX A;  1OVA A;  1KCT A;  1DB2 A;  1JMO A;  5IO1 A;  4AU3 B;  4GA7 A;  3DRU A;  1E03 I;  4EB1 I;  1PSI A;  1IMV A;  2XN5 A;  3Q03 A;  3DY0 A;  1NQ9 I;  1DZG I;  1DVM A;  3R4L A;  1EZX A;  1LK6 I;  3ZHA A;  1AS4 A;  4AQH A;  2HIJ L;  1OVA B;  2R9Y A;  1SR5 A;  1M93 B;  2GD4 C;  2HI9 A;  4R9I A;  1MTP A;  1DVN A;  3CWM A;  1JRR A;  2ACH A;  4C49 A;  3STO A;  1JMJ A;  2XN7 A;  2DUT A;  2PEF A;  4DY7 C;  4P0F A;  2VH4 A;  1E05 I;  3LW2 A;  1AZX I;  1ANT I;  3NDA A;  2WXY C;  2QUG A;  3DRM A;  3F1S A;  4RSQ A;  4EB1 L;  1TB6 I;  2VDX A;  2WXW A;  3UT3 A;  4Y3K A;  3VVJ A;  2XN6 A;  1OYH L;  3EVJ I;  1OO8 A;  1HP7 A;  2B4X L;  1IZ2 A;  2PEE A;  2BEH I;  1R1L I;  3PB1 I;  9PAI A;  1LQ8 A;  3CWL A;  1XQG A;  1QMN A;  3NDD A;  1B3K A;  1QMB A;  4G8R A;  4X30 A;  3DLW A;  4PYW A;  5BRR I;  4RO9 A;  4ROA A;  3F5N A;  1QLP A;  2ANT I;  3LE2 A;  3CAA A;  4ROB A;  4ZK3 A;  2XN3 A;  5CDX A;  4ZK0 A;  1WZ9 A;  4C41 A;  3B9F I;  3PZF A;  2ARR A;  3NE4 A;  1D5S A;  2H4P A;  4AFX A; 
#chains in the Genus database with same CATH topology
 2WXX A;  1E04 I;  4IC0 A;  2HIJ I;  4AU3 A;  4IF8 A;  1JJO C;  9API A;  4KDS A;  1DZG L;  1OPH A;  5EI0 A;  1XU8 A;  3FGQ A;  3Q02 A;  4DY0 A;  4AU2 A;  5HGC A;  2OL2 A;  2WXZ C;  2H4Q A;  5CE0 A;  1HLE A;  1DZH I;  1SNG A;  1XQJ A;  2BEH L;  2WY1 A;  3KCG I;  4P0O A;  3CVM A;  4G8O A;  2OAY A;  3F02 A;  2VDY A;  3T1P A;  5INW A;  1F0C A;  1K9O I;  2V95 A;  1ATU A;  2H4R A;  4AJT A;  2CEO A;  2ZNH A;  1OVA C;  1BY7 A;  1C5G A;  2D26 A;  2ARQ A;  2B5T I;  1OYH I;  3OZQ A;  1ATT A;  2B4X I;  4AJU A;  1A7C A;  1JTI A;  1OC0 A;  4Y40 A;  5C98 A;  8API A;  3NDF A;  1JVQ I;  4CAA A;  5CDZ A;  2WY0 C;  2WXZ A;  1YXA A;  4DTE A;  1BR8 I;  1C8O A;  4AU4 A;  2RIW A;  4BB2 A;  1T1F A;  1ATH A;  1SEK A;  2RIV A;  2ZV6 A;  1LJ5 A;  3H5C A;  1DZH L;  7API A;  4YIA A;  1UHG A;  3EOX A;  1OVA A;  1KCT A;  1DB2 A;  1JMO A;  5IO1 A;  4AU3 B;  4GA7 A;  3DRU A;  1E03 I;  4EB1 I;  1PSI A;  1IMV A;  2XN5 A;  3Q03 A;  3DY0 A;  1NQ9 I;  1DZG I;  1DVM A;  3R4L A;  1EZX A;  1LK6 I;  3ZHA A;  1AS4 A;  4AQH A;  2HIJ L;  1OVA B;  2R9Y A;  1SR5 A;  1M93 B;  2GD4 C;  2HI9 A;  4R9I A;  1MTP A;  1DVN A;  3CWM A;  1JRR A;  2ACH A;  4C49 A;  3STO A;  1JMJ A;  2XN7 A;  2DUT A;  2PEF A;  4DY7 C;  4P0F A;  2VH4 A;  1E05 I;  3LW2 A;  1AZX I;  1ANT I;  3NDA A;  2WXY C;  2QUG A;  3DRM A;  3F1S A;  4RSQ A;  4EB1 L;  1TB6 I;  2VDX A;  2WXW A;  3UT3 A;  4Y3K A;  3VVJ A;  2XN6 A;  1OYH L;  3EVJ I;  1OO8 A;  1HP7 A;  2B4X L;  1IZ2 A;  2PEE A;  2BEH I;  1R1L I;  3PB1 I;  9PAI A;  1LQ8 A;  3CWL A;  1XQG A;  1QMN A;  3NDD A;  1B3K A;  1QMB A;  4G8R A;  4X30 A;  3DLW A;  4PYW A;  5BRR I;  4RO9 A;  4ROA A;  3F5N A;  1QLP A;  2ANT I;  3LE2 A;  3CAA A;  4ROB A;  4ZK3 A;  2XN3 A;  5CDX A;  4ZK0 A;  1WZ9 A;  4C41 A;  3B9F I;  3PZF A;  2ARR A;  3NE4 A;  1D5S A;  2H4P A;  4AFX A; 
#chains in the Genus database with same CATH homology
 2WXX A;  1E04 I;  4IC0 A;  2HIJ I;  4AU3 A;  4IF8 A;  1JJO C;  9API A;  4KDS A;  1DZG L;  1OPH A;  5EI0 A;  1XU8 A;  3FGQ A;  3Q02 A;  4DY0 A;  4AU2 A;  5HGC A;  2OL2 A;  2WXZ C;  2H4Q A;  5CE0 A;  1HLE A;  1DZH I;  1SNG A;  1XQJ A;  2BEH L;  2WY1 A;  3KCG I;  4P0O A;  3CVM A;  4G8O A;  2OAY A;  3F02 A;  2VDY A;  3T1P A;  5INW A;  1F0C A;  1K9O I;  2V95 A;  1ATU A;  2H4R A;  4AJT A;  2CEO A;  2ZNH A;  1OVA C;  1BY7 A;  1C5G A;  2D26 A;  2ARQ A;  2B5T I;  1OYH I;  3OZQ A;  1ATT A;  2B4X I;  4AJU A;  1A7C A;  1JTI A;  1OC0 A;  4Y40 A;  5C98 A;  8API A;  3NDF A;  1JVQ I;  4CAA A;  5CDZ A;  2WY0 C;  2WXZ A;  1YXA A;  4DTE A;  1BR8 I;  1C8O A;  4AU4 A;  2RIW A;  4BB2 A;  1T1F A;  1ATH A;  1SEK A;  2RIV A;  2ZV6 A;  1LJ5 A;  3H5C A;  1DZH L;  7API A;  4YIA A;  1UHG A;  3EOX A;  1OVA A;  1KCT A;  1DB2 A;  1JMO A;  5IO1 A;  4AU3 B;  4GA7 A;  3DRU A;  1E03 I;  4EB1 I;  1PSI A;  1IMV A;  2XN5 A;  3Q03 A;  3DY0 A;  1NQ9 I;  1DZG I;  1DVM A;  3R4L A;  1EZX A;  1LK6 I;  3ZHA A;  1AS4 A;  4AQH A;  2HIJ L;  1OVA B;  2R9Y A;  1SR5 A;  1M93 B;  2GD4 C;  2HI9 A;  4R9I A;  1MTP A;  1DVN A;  3CWM A;  1JRR A;  2ACH A;  4C49 A;  3STO A;  1JMJ A;  2XN7 A;  2DUT A;  2PEF A;  4DY7 C;  4P0F A;  2VH4 A;  1E05 I;  3LW2 A;  1AZX I;  1ANT I;  3NDA A;  2WXY C;  2QUG A;  3DRM A;  3F1S A;  4RSQ A;  4EB1 L;  1TB6 I;  2VDX A;  2WXW A;  3UT3 A;  4Y3K A;  3VVJ A;  2XN6 A;  1OYH L;  3EVJ I;  1OO8 A;  1HP7 A;  2B4X L;  1IZ2 A;  2PEE A;  2BEH I;  1R1L I;  3PB1 I;  9PAI A;  1LQ8 A;  3CWL A;  1XQG A;  1QMN A;  3NDD A;  1B3K A;  1QMB A;  4G8R A;  4X30 A;  3DLW A;  4PYW A;  5BRR I;  4RO9 A;  4ROA A;  3F5N A;  1QLP A;  2ANT I;  3LE2 A;  3CAA A;  4ROB A;  4ZK3 A;  2XN3 A;  5CDX A;  4ZK0 A;  1WZ9 A;  4C41 A;  3B9F I;  3PZF A;  2ARR A;  3NE4 A;  1D5S A;  2H4P A;  4AFX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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