1ULNA

Crystal structure of pokeweed lectin-d1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
82
structure length
82
Chain Sequence
APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords lectin-D
publication title Structures of two lectins from the roots of pokeweed (Phytolacca americana).
pubmed doi rcsb
total genus 25
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2003-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulnA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulnA01
1UHAA 2X52A 1HEVA 1P9ZA 9WGAA 1WGTA 1ULKA 1ULMA 1WKXA 1P9GA 2DKVA 1K7VA 4MPIA 2WGCA 1K7TA 7WGAA 4AMLA 2LB7A 1ULNA 1WGCA 1Q9BA 4WP4A 2X3TA 1K7UA 2UVOA 2CWGA
chains in the Genus database with same CATH superfamily
5HQ8A 1LR8A 1YTPA 2X52A 1FAQA 2A20A 2N17A 5E3RA 2NU4I 2N1AB 2ODDA 1R0RI 9WGAA 1DS3I 1OVOA 2VRWB 1TOTA 2SGEI 2PQ8A 1S20A 5JHWC 1MJAA 1AN1I 3VDPA 1ULMA 1Z2IA 1DS2I 2SGFI 4HGUA 3TOAA 1PTQA 1R79A 1IY5A 2BUSA 2B0UC 3TJQA 3E59A 3UGDA 2CJSC 4OVOA 1FYBA 4MPIA 2YUUA 3E2IA 1W3SA 1XBTA 2NU2I 1IW4A 2XRCA 2RIJA 1SGNI 2UZ3A 3QTLD 4JCVE 1WGCA 2GKRI 2CWFA 2JA1A 2X3TA 2V1CA 1YU6C 2OU2A 1CSOI 1HJAI 2E5RA 1TGSI 1CT4I 2GVIA 2NU1I 1HEVA 2OVOA 1Y8FA 1P9ZA 1XX6A 3UOEA 2SGDI 2LEOA 2JYYA 1NUBA 1X4SA 3FSXA 3SEKC 3GOXA 3CXLA 1TURA 1X74A 1ULKA 1UUCA 1WTJA 2KMPA 3D00A 5E3PA 3R5DA 2GKVA 1P9GA 1MJBA 1W4RA 1FY7A 2GKTI 5J8FA 5DAEA 1BUSA 1UVFA 2RC4A 1OMTA 4UXIA 1PCEA 2K9HA 3RU0A 3TOBA 2WGCA 1CGII 2SGQI 3OXFA 2JZMA 3QAHA 1K7TA 2N71A 2F3CI 4B6DA 2ENZA 1LR9A 1BMOA 2N52A 1SGYI 4UXHA 2UVOA 2V53A 2KMOA 2QQ0A 1HDLA 1UHAA 3PDNA 2QQCA 2ORVA 5CCMA 2NU0I 1PJUA 5E3QA 2QQDA 1WGTA 4A24A 1Y1BA 2OZUA 1MT1A 2YQPA 2W0TA 2GIVA 2B8TA 1Y1CA 2L7XA 3TO9A 1RFHA 1WKXA 2ARPF 2KMQA 2ERWA 2P6AC 1TBOA 3OXGA 2V1CC 2J87A 1SGEI 4L9MA 1CHOI 3R5CA 3MEKA 4E1RA 4GI3C 1PTRA 3UFFA 1SGDI 4DNCA 1VDDA 1SGRI 2ORWA 4FKDA 5EX0A 2JW6A 3TO7A 2LUYA 1TBNA 2LB7A 1ULNA 2NU3I 2SGPI 1Q9BA 2DIPA 1M8BA 2JXDA 1V1HA 2ENNA 2ROWA 3QWPA 3R5AA 1UVGA 2ELIA 1XA6A 1KMAA 3HH2C 1OMUA 1TUSA 3UEJA 1CT2I 1FARA 1SGQI 1Z7KB 2E73A 1CT0I 1OYVI 5CCLA 2CWHA 1M8CA 5FUWA 3UGIA 3OL0A 4SGBI 5HI7A 1U5KA 1H0ZA 1SGPI 2QQEA 1N13A 2KMRA 3UGLA 1V1IA 2KCXA 2WVJA 1KBFA 1TBRR 3FSYA 3VE5A 1NXUA 1HPTA 2DKVA 2L8EA 3OVOA 3SGBI 3R5BA 3FC3A 2WCYA 5J8CA 1KBEA 1IY6A 1LR7A 4UXJA 1PPFI 1K7VA 3BJIA 2M5XA 3OXLA 1CGJI 5FUXA 3TO6A 4E1PA 5EX3A 3VDUA 1TBQR 3SGQI 1CE3A 7WGAA 2DB6A 4AMLA 3UEYA 2FNFX 2Y0MA 2J9RA 5FUYA 3KY9A 1TIHA 4WP4A 5FUVA 2OD1A 1K7UA 1MJ9A 2CWGA 3B4VC 2QPOA
chains in the Genus database with same CATH topology
1UHAA 2X52A 1HEVA 1P9ZA 9WGAA 1WGTA 1ULKA 1ULMA 1WKXA 1P9GA 2DKVA 1K7VA 4MPIA 2WGCA 1K7TA 7WGAA 4AMLA 2LB7A 1ULNA 1WGCA 1Q9BA 4WP4A 2X3TA 1K7UA 2UVOA 2CWGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UHA A;  2X52 A;  1HEV A;  1P9Z A;  9WGA A;  1WGT A;  1ULK A;  1ULM A;  1WKX A;  1P9G A;  2DKV A;  1K7V A;  4MPI A;  2WGC A;  1K7T A;  7WGA A;  4AML A;  2LB7 A;  1ULN A;  1WGC A;  1Q9B A;  4WP4 A;  2X3T A;  1K7U A;  2UVO A;  2CWG A; 
#chains in the Genus database with same CATH topology
 5HQ8 A;  1LR8 A;  1YTP A;  2X52 A;  1FAQ A;  2A20 A;  2N17 A;  5E3R A;  2NU4 I;  2N1A B;  2ODD A;  1R0R I;  9WGA A;  1DS3 I;  1OVO A;  2VRW B;  1TOT A;  2SGE I;  2PQ8 A;  1S20 A;  5JHW C;  1MJA A;  1AN1 I;  3VDP A;  1ULM A;  1Z2I A;  1DS2 I;  2SGF I;  4HGU A;  3TOA A;  1PTQ A;  1R79 A;  1IY5 A;  2BUS A;  2B0U C;  3TJQ A;  3E59 A;  3UGD A;  2CJS C;  4OVO A;  1FYB A;  4MPI A;  2YUU A;  3E2I A;  1W3S A;  1XBT A;  2NU2 I;  1IW4 A;  2XRC A;  2RIJ A;  1SGN I;  2UZ3 A;  3QTL D;  4JCV E;  1WGC A;  2GKR I;  2CWF A;  2JA1 A;  2X3T A;  2V1C A;  1YU6 C;  2OU2 A;  1CSO I;  1HJA I;  2E5R A;  1TGS I;  1CT4 I;  2GVI A;  2NU1 I;  1HEV A;  2OVO A;  1Y8F A;  1P9Z A;  1XX6 A;  3UOE A;  2SGD I;  2LEO A;  2JYY A;  1NUB A;  1X4S A;  3FSX A;  3SEK C;  3GOX A;  3CXL A;  1TUR A;  1X74 A;  1ULK A;  1UUC A;  1WTJ A;  2KMP A;  3D00 A;  5E3P A;  3R5D A;  2GKV A;  1P9G A;  1MJB A;  1W4R A;  1FY7 A;  2GKT I;  5J8F A;  5DAE A;  1BUS A;  1UVF A;  2RC4 A;  1OMT A;  4UXI A;  1PCE A;  2K9H A;  3RU0 A;  3TOB A;  2WGC A;  1CGI I;  2SGQ I;  3OXF A;  2JZM A;  3QAH A;  1K7T A;  2N71 A;  2F3C I;  4B6D A;  2ENZ A;  1LR9 A;  1BMO A;  2N52 A;  1SGY I;  4UXH A;  2UVO A;  2V53 A;  2KMO A;  2QQ0 A;  1HDL A;  1UHA A;  3PDN A;  2QQC A;  2ORV A;  5CCM A;  2NU0 I;  1PJU A;  5E3Q A;  2QQD A;  1WGT A;  4A24 A;  1Y1B A;  2OZU A;  1MT1 A;  2YQP A;  2W0T A;  2GIV A;  2B8T A;  1Y1C A;  2L7X A;  3TO9 A;  1RFH A;  1WKX A;  2ARP F;  2KMQ A;  2ERW A;  2P6A C;  1TBO A;  3OXG A;  2V1C C;  2J87 A;  1SGE I;  4L9M A;  1CHO I;  3R5C A;  3MEK A;  4E1R A;  4GI3 C;  1PTR A;  3UFF A;  1SGD I;  4DNC A;  1VDD A;  1SGR I;  2ORW A;  4FKD A;  5EX0 A;  2JW6 A;  3TO7 A;  2LUY A;  1TBN A;  2LB7 A;  1ULN A;  2NU3 I;  2SGP I;  1Q9B A;  2DIP A;  1M8B A;  2JXD A;  1V1H A;  2ENN A;  2ROW A;  3QWP A;  3R5A A;  1UVG A;  2ELI A;  1XA6 A;  1KMA A;  3HH2 C;  1OMU A;  1TUS A;  3UEJ A;  1CT2 I;  1FAR A;  1SGQ I;  1Z7K B;  2E73 A;  1CT0 I;  1OYV I;  5CCL A;  2CWH A;  1M8C A;  5FUW A;  3UGI A;  3OL0 A;  4SGB I;  5HI7 A;  1U5K A;  1H0Z A;  1SGP I;  2QQE A;  1N13 A;  2KMR A;  3UGL A;  1V1I A;  2KCX A;  2WVJ A;  1KBF A;  1TBR R;  3FSY A;  3VE5 A;  1NXU A;  1HPT A;  2DKV A;  2L8E A;  3OVO A;  3SGB I;  3R5B A;  3FC3 A;  2WCY A;  5J8C A;  1KBE A;  1IY6 A;  1LR7 A;  4UXJ A;  1PPF I;  1K7V A;  3BJI A;  2M5X A;  3OXL A;  1CGJ I;  5FUX A;  3TO6 A;  4E1P A;  5EX3 A;  3VDU A;  1TBQ R;  3SGQ I;  1CE3 A;  7WGA A;  2DB6 A;  4AML A;  3UEY A;  2FNF X;  2Y0M A;  2J9R A;  5FUY A;  3KY9 A;  1TIH A;  4WP4 A;  5FUV A;  2OD1 A;  1K7U A;  1MJ9 A;  2CWG A;  3B4V C;  2QPO A; 
#chains in the Genus database with same CATH homology
 1UHA A;  2X52 A;  1HEV A;  1P9Z A;  9WGA A;  1WGT A;  1ULK A;  1ULM A;  1WKX A;  1P9G A;  2DKV A;  1K7V A;  4MPI A;  2WGC A;  1K7T A;  7WGA A;  4AML A;  2LB7 A;  1ULN A;  1WGC A;  1Q9B A;  4WP4 A;  2X3T A;  1K7U A;  2UVO A;  2CWG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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