1URBA

Alkaline phosphatase (n51mg)
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Alkaline phosphatase
molecule keywords ALKALINE PHOSPHATASE
publication title Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
total genus 163
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1996-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1urbA00
1ZEDA 1N2KA 1ZEFA 2W5XA 3BDGB 3NVLA 5L0BA 2GSUA 4UPIA 4UOPA 5IJSA 4LRFA 4LR2A 5GRRA 1Y6VA 3TWZA 4LRAA 3WBHA 3UN3A 4KM4A 1EW9A 3NKNA 4NWXA 1ZEBA 2ANHA 3T02A 5C66A 5GOVA 2ZKTA 3UNYA 4B56A 5LQQA 2W8DA 3DPCA 1SHNA 1E2SP 3BDGA 1HJKA 5L0KA 4CXSA 3NKMA 4LR9A 1Y7AA 1EJJA 3NKQA 4LR7A 4YR1A 3BDHA 5DLTA 1URAA 2RH6A 2XR9A 3B5QA 4LRDA 2W5RA 1KHKA 1ED9A 5K4PA 4MY4A 1ALHA 5KXAA 4KJDA 4FDIA 1HDHA 4CYRA 2VQRA 1E33P 2W5WA 1ALKA 4FDJA 1B8JA 1URBA 3SZZA 4MHXA 5EGEA 1ANJA 2W5QA 3OT9A 1SHQA 3WAVA 3IGYB 1ELYA 4UOOA 3TX0A 2W5VA 1AJAA 1ALIA 2GLQA 1KHLA 5DLWA 3BDFA 3UO0A 3IGZB 3UN5A 3M8WA 4GTWA 4ZGAA 5DLVA 4NWJA 4UPHA 1ANIA 4QAXA 2W5SA 2QZUA 5AJ9A 2GSNA 3M8ZA 4ZG9A 2W5TA 3M7VA 5LRMA 3MK2A 1E3CP 1EW8A 1ED8A 2IUCB 4CXKA 3CMRA 5HRTA 3E2DA 1O98A 3ED4A 3NKOA 1KH7A 1N2LA 3SZYA 3NKRA 4UORA 1ELXA 1EQJA 3WAWA 1ELZA 3WAXA 1O99A 3IDDA 3NKPA 4N7TA 1AJDA 1AJCA 3A52A 1EW2A 3TG0A 3T01A 4KJGA 4LR8A 3LXQA 1ALJA 2IUCA 1EI6A 3M8YA 4GTXA 1KHJA 4GTYA 5L0EA 4CXUA 4MIVA 4LREA 4KAVA 4LQYA 4UPLA 4ZG6A 2W8SA 5INHA 2XRGA 5LIAA 3KD8A 4ZG7A 1AUKA 4GTZA 2G9YA 3DYCA 3MK0A 2D1GA 1KHNA 4CYSA 3MK1A 1KH5A 3Q3QA 4UPKA 5TJ3A 3T00A 4KAYA 1HQAA 1KH4A 4LRCA 2X98A 5IJQA 2GSOA 4TN0A 3UN2A 1AJBA 1E1ZP 1FSUA 1K7HA 2IFYA 1KH9A 1P49A 2GA3A 5EGHA 4LRBA 3WAYA 5LRNA
chains in the Genus database with same CATH superfamily
1ZEDA 1N2KA 1ZEFA 2W5XA 3BDGB 3NVLA 5L0BA 2GSUA 4UPIA 4UOPA 5IJSA 4LRFA 4LR2A 5GRRA 1Y6VA 3TWZA 4LRAA 3WBHA 3UN3A 4KM4A 1EW9A 3NKNA 4NWXA 1ZEBA 2ANHA 3T02A 5C66A 5GOVA 2ZKTA 3UNYA 4B56A 5LQQA 2W8DA 3DPCA 1SHNA 1E2SP 3BDGA 1HJKA 5L0KA 4CXSA 3NKMA 4LR9A 1Y7AA 1EJJA 3NKQA 4LR7A 4YR1A 3BDHA 5DLTA 1URAA 2RH6A 2XR9A 3B5QA 4LRDA 2W5RA 1KHKA 1ED9A 5K4PA 4MY4A 1ALHA 5KXAA 4KJDA 4FDIA 1HDHA 4CYRA 2VQRA 1E33P 2W5WA 1ALKA 4FDJA 1B8JA 1URBA 3SZZA 4MHXA 5EGEA 1ANJA 2W5QA 3OT9A 1SHQA 3WAVA 3IGYB 1ELYA 4UOOA 3TX0A 2W5VA 1AJAA 1ALIA 2GLQA 1KHLA 5DLWA 3BDFA 3UO0A 3IGZB 3UN5A 3M8WA 4GTWA 4ZGAA 5DLVA 4NWJA 4UPHA 1ANIA 4QAXA 2W5SA 2QZUA 5AJ9A 2GSNA 3M8ZA 4ZG9A 2W5TA 3M7VA 5LRMA 3MK2A 1E3CP 1EW8A 1ED8A 2IUCB 4CXKA 3CMRA 5HRTA 3E2DA 1O98A 3ED4A 3NKOA 1KH7A 1N2LA 3SZYA 3NKRA 4UORA 1ELXA 1EQJA 3WAWA 1ELZA 3WAXA 1O99A 3IDDA 3NKPA 4N7TA 1AJDA 1AJCA 3A52A 1EW2A 3TG0A 3T01A 4KJGA 4LR8A 3LXQA 1ALJA 2IUCA 1EI6A 3M8YA 4GTXA 1KHJA 4GTYA 5L0EA 4CXUA 4MIVA 4LREA 4KAVA 4LQYA 4UPLA 4ZG6A 2W8SA 5INHA 2XRGA 5LIAA 3KD8A 4ZG7A 1AUKA 4GTZA 2G9YA 3DYCA 3MK0A 2D1GA 1KHNA 4CYSA 3MK1A 1KH5A 3Q3QA 4UPKA 5TJ3A 3T00A 4KAYA 1HQAA 1KH4A 4LRCA 2X98A 5IJQA 2GSOA 4TN0A 3UN2A 1AJBA 1E1ZP 1FSUA 1K7HA 2IFYA 1KH9A 1P49A 2GA3A 5EGHA 4LRBA 3WAYA 5LRNA
chains in the Genus database with same CATH topology
1ZEDA 1N2KA 1ZEFA 2W5XA 3BDGB 3NVLA 5L0BA 2GSUA 4UPIA 4UOPA 5IJSA 4LRFA 4LR2A 5GRRA 1Y6VA 3TWZA 4LRAA 3WBHA 3UN3A 4KM4A 1EW9A 3NKNA 4NWXA 1ZEBA 2ANHA 3T02A 5C66A 5GOVA 2ZKTA 3UNYA 4B56A 5LQQA 2W8DA 3DPCA 1SHNA 1E2SP 3BDGA 1HJKA 5L0KA 4CXSA 3NKMA 4LR9A 1Y7AA 1EJJA 3NKQA 4LR7A 4YR1A 3BDHA 5DLTA 1URAA 2RH6A 2XR9A 3B5QA 4LRDA 2W5RA 1KHKA 1ED9A 5K4PA 4MY4A 1ALHA 5KXAA 4KJDA 4FDIA 1HDHA 4CYRA 2VQRA 1E33P 2W5WA 1ALKA 4FDJA 1B8JA 1URBA 3SZZA 4MHXA 5EGEA 1ANJA 2W5QA 3OT9A 1SHQA 3WAVA 3IGYB 1ELYA 4UOOA 3TX0A 2W5VA 1AJAA 1ALIA 2GLQA 1KHLA 5DLWA 3BDFA 3UO0A 3IGZB 3UN5A 3M8WA 4GTWA 4ZGAA 5DLVA 4NWJA 4UPHA 1ANIA 4QAXA 2W5SA 2QZUA 5AJ9A 2GSNA 3M8ZA 4ZG9A 2W5TA 3M7VA 5LRMA 3MK2A 1E3CP 1EW8A 1ED8A 2IUCB 4CXKA 3CMRA 5HRTA 3E2DA 1O98A 3ED4A 3NKOA 1KH7A 1N2LA 3SZYA 3NKRA 4UORA 1ELXA 1EQJA 3WAWA 1ELZA 3WAXA 1O99A 3IDDA 3NKPA 4N7TA 1AJDA 1AJCA 3A52A 1EW2A 3TG0A 3T01A 4KJGA 4LR8A 3LXQA 1ALJA 2IUCA 1EI6A 3M8YA 4GTXA 1KHJA 4GTYA 5L0EA 4CXUA 4MIVA 4LREA 4KAVA 4LQYA 4UPLA 4ZG6A 2W8SA 5INHA 2XRGA 5LIAA 3KD8A 4ZG7A 1AUKA 4GTZA 2G9YA 3DYCA 3MK0A 2D1GA 1KHNA 4CYSA 3MK1A 1KH5A 3Q3QA 4UPKA 5TJ3A 3T00A 4KAYA 1HQAA 1KH4A 4LRCA 2X98A 5IJQA 2GSOA 4TN0A 3UN2A 1AJBA 1E1ZP 1FSUA 1K7HA 2IFYA 1KH9A 1P49A 2GA3A 5EGHA 4LRBA 3WAYA 5LRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZED A;  1N2K A;  1ZEF A;  2W5X A;  3BDG B;  3NVL A;  5L0B A;  2GSU A;  4UPI A;  4UOP A;  5IJS A;  4LRF A;  4LR2 A;  5GRR A;  1Y6V A;  3TWZ A;  4LRA A;  3WBH A;  3UN3 A;  4KM4 A;  1EW9 A;  3NKN A;  4NWX A;  1ZEB A;  2ANH A;  3T02 A;  5C66 A;  5GOV A;  2ZKT A;  3UNY A;  4B56 A;  5LQQ A;  2W8D A;  3DPC A;  1SHN A;  1E2S P;  3BDG A;  1HJK A;  5L0K A;  4CXS A;  3NKM A;  4LR9 A;  1Y7A A;  1EJJ A;  3NKQ A;  4LR7 A;  4YR1 A;  3BDH A;  5DLT A;  1URA A;  2RH6 A;  2XR9 A;  3B5Q A;  4LRD A;  2W5R A;  1KHK A;  1ED9 A;  5K4P A;  4MY4 A;  1ALH A;  5KXA A;  4KJD A;  4FDI A;  1HDH A;  4CYR A;  2VQR A;  1E33 P;  2W5W A;  1ALK A;  4FDJ A;  1B8J A;  1URB A;  3SZZ A;  4MHX A;  5EGE A;  1ANJ A;  2W5Q A;  3OT9 A;  1SHQ A;  3WAV A;  3IGY B;  1ELY A;  4UOO A;  3TX0 A;  2W5V A;  1AJA A;  1ALI A;  2GLQ A;  1KHL A;  5DLW A;  3BDF A;  3UO0 A;  3IGZ B;  3UN5 A;  3M8W A;  4GTW A;  4ZGA A;  5DLV A;  4NWJ A;  4UPH A;  1ANI A;  4QAX A;  2W5S A;  2QZU A;  5AJ9 A;  2GSN A;  3M8Z A;  4ZG9 A;  2W5T A;  3M7V A;  5LRM A;  3MK2 A;  1E3C P;  1EW8 A;  1ED8 A;  2IUC B;  4CXK A;  3CMR A;  5HRT A;  3E2D A;  1O98 A;  3ED4 A;  3NKO A;  1KH7 A;  1N2L A;  3SZY A;  3NKR A;  4UOR A;  1ELX A;  1EQJ A;  3WAW A;  1ELZ A;  3WAX A;  1O99 A;  3IDD A;  3NKP A;  4N7T A;  1AJD A;  1AJC A;  3A52 A;  1EW2 A;  3TG0 A;  3T01 A;  4KJG A;  4LR8 A;  3LXQ A;  1ALJ A;  2IUC A;  1EI6 A;  3M8Y A;  4GTX A;  1KHJ A;  4GTY A;  5L0E A;  4CXU A;  4MIV A;  4LRE A;  4KAV A;  4LQY A;  4UPL A;  4ZG6 A;  2W8S A;  5INH A;  2XRG A;  5LIA A;  3KD8 A;  4ZG7 A;  1AUK A;  4GTZ A;  2G9Y A;  3DYC A;  3MK0 A;  2D1G A;  1KHN A;  4CYS A;  3MK1 A;  1KH5 A;  3Q3Q A;  4UPK A;  5TJ3 A;  3T00 A;  4KAY A;  1HQA A;  1KH4 A;  4LRC A;  2X98 A;  5IJQ A;  2GSO A;  4TN0 A;  3UN2 A;  1AJB A;  1E1Z P;  1FSU A;  1K7H A;  2IFY A;  1KH9 A;  1P49 A;  2GA3 A;  5EGH A;  4LRB A;  3WAY A;  5LRN A; 
#chains in the Genus database with same CATH topology
 1ZED A;  1N2K A;  1ZEF A;  2W5X A;  3BDG B;  3NVL A;  5L0B A;  2GSU A;  4UPI A;  4UOP A;  5IJS A;  4LRF A;  4LR2 A;  5GRR A;  1Y6V A;  3TWZ A;  4LRA A;  3WBH A;  3UN3 A;  4KM4 A;  1EW9 A;  3NKN A;  4NWX A;  1ZEB A;  2ANH A;  3T02 A;  5C66 A;  5GOV A;  2ZKT A;  3UNY A;  4B56 A;  5LQQ A;  2W8D A;  3DPC A;  1SHN A;  1E2S P;  3BDG A;  1HJK A;  5L0K A;  4CXS A;  3NKM A;  4LR9 A;  1Y7A A;  1EJJ A;  3NKQ A;  4LR7 A;  4YR1 A;  3BDH A;  5DLT A;  1URA A;  2RH6 A;  2XR9 A;  3B5Q A;  4LRD A;  2W5R A;  1KHK A;  1ED9 A;  5K4P A;  4MY4 A;  1ALH A;  5KXA A;  4KJD A;  4FDI A;  1HDH A;  4CYR A;  2VQR A;  1E33 P;  2W5W A;  1ALK A;  4FDJ A;  1B8J A;  1URB A;  3SZZ A;  4MHX A;  5EGE A;  1ANJ A;  2W5Q A;  3OT9 A;  1SHQ A;  3WAV A;  3IGY B;  1ELY A;  4UOO A;  3TX0 A;  2W5V A;  1AJA A;  1ALI A;  2GLQ A;  1KHL A;  5DLW A;  3BDF A;  3UO0 A;  3IGZ B;  3UN5 A;  3M8W A;  4GTW A;  4ZGA A;  5DLV A;  4NWJ A;  4UPH A;  1ANI A;  4QAX A;  2W5S A;  2QZU A;  5AJ9 A;  2GSN A;  3M8Z A;  4ZG9 A;  2W5T A;  3M7V A;  5LRM A;  3MK2 A;  1E3C P;  1EW8 A;  1ED8 A;  2IUC B;  4CXK A;  3CMR A;  5HRT A;  3E2D A;  1O98 A;  3ED4 A;  3NKO A;  1KH7 A;  1N2L A;  3SZY A;  3NKR A;  4UOR A;  1ELX A;  1EQJ A;  3WAW A;  1ELZ A;  3WAX A;  1O99 A;  3IDD A;  3NKP A;  4N7T A;  1AJD A;  1AJC A;  3A52 A;  1EW2 A;  3TG0 A;  3T01 A;  4KJG A;  4LR8 A;  3LXQ A;  1ALJ A;  2IUC A;  1EI6 A;  3M8Y A;  4GTX A;  1KHJ A;  4GTY A;  5L0E A;  4CXU A;  4MIV A;  4LRE A;  4KAV A;  4LQY A;  4UPL A;  4ZG6 A;  2W8S A;  5INH A;  2XRG A;  5LIA A;  3KD8 A;  4ZG7 A;  1AUK A;  4GTZ A;  2G9Y A;  3DYC A;  3MK0 A;  2D1G A;  1KHN A;  4CYS A;  3MK1 A;  1KH5 A;  3Q3Q A;  4UPK A;  5TJ3 A;  3T00 A;  4KAY A;  1HQA A;  1KH4 A;  4LRC A;  2X98 A;  5IJQ A;  2GSO A;  4TN0 A;  3UN2 A;  1AJB A;  1E1Z P;  1FSU A;  1K7H A;  2IFY A;  1KH9 A;  1P49 A;  2GA3 A;  5EGH A;  4LRB A;  3WAY A;  5LRN A; 
#chains in the Genus database with same CATH homology
 1ZED A;  1N2K A;  1ZEF A;  2W5X A;  3BDG B;  3NVL A;  5L0B A;  2GSU A;  4UPI A;  4UOP A;  5IJS A;  4LRF A;  4LR2 A;  5GRR A;  1Y6V A;  3TWZ A;  4LRA A;  3WBH A;  3UN3 A;  4KM4 A;  1EW9 A;  3NKN A;  4NWX A;  1ZEB A;  2ANH A;  3T02 A;  5C66 A;  5GOV A;  2ZKT A;  3UNY A;  4B56 A;  5LQQ A;  2W8D A;  3DPC A;  1SHN A;  1E2S P;  3BDG A;  1HJK A;  5L0K A;  4CXS A;  3NKM A;  4LR9 A;  1Y7A A;  1EJJ A;  3NKQ A;  4LR7 A;  4YR1 A;  3BDH A;  5DLT A;  1URA A;  2RH6 A;  2XR9 A;  3B5Q A;  4LRD A;  2W5R A;  1KHK A;  1ED9 A;  5K4P A;  4MY4 A;  1ALH A;  5KXA A;  4KJD A;  4FDI A;  1HDH A;  4CYR A;  2VQR A;  1E33 P;  2W5W A;  1ALK A;  4FDJ A;  1B8J A;  1URB A;  3SZZ A;  4MHX A;  5EGE A;  1ANJ A;  2W5Q A;  3OT9 A;  1SHQ A;  3WAV A;  3IGY B;  1ELY A;  4UOO A;  3TX0 A;  2W5V A;  1AJA A;  1ALI A;  2GLQ A;  1KHL A;  5DLW A;  3BDF A;  3UO0 A;  3IGZ B;  3UN5 A;  3M8W A;  4GTW A;  4ZGA A;  5DLV A;  4NWJ A;  4UPH A;  1ANI A;  4QAX A;  2W5S A;  2QZU A;  5AJ9 A;  2GSN A;  3M8Z A;  4ZG9 A;  2W5T A;  3M7V A;  5LRM A;  3MK2 A;  1E3C P;  1EW8 A;  1ED8 A;  2IUC B;  4CXK A;  3CMR A;  5HRT A;  3E2D A;  1O98 A;  3ED4 A;  3NKO A;  1KH7 A;  1N2L A;  3SZY A;  3NKR A;  4UOR A;  1ELX A;  1EQJ A;  3WAW A;  1ELZ A;  3WAX A;  1O99 A;  3IDD A;  3NKP A;  4N7T A;  1AJD A;  1AJC A;  3A52 A;  1EW2 A;  3TG0 A;  3T01 A;  4KJG A;  4LR8 A;  3LXQ A;  1ALJ A;  2IUC A;  1EI6 A;  3M8Y A;  4GTX A;  1KHJ A;  4GTY A;  5L0E A;  4CXU A;  4MIV A;  4LRE A;  4KAV A;  4LQY A;  4UPL A;  4ZG6 A;  2W8S A;  5INH A;  2XRG A;  5LIA A;  3KD8 A;  4ZG7 A;  1AUK A;  4GTZ A;  2G9Y A;  3DYC A;  3MK0 A;  2D1G A;  1KHN A;  4CYS A;  3MK1 A;  1KH5 A;  3Q3Q A;  4UPK A;  5TJ3 A;  3T00 A;  4KAY A;  1HQA A;  1KH4 A;  4LRC A;  2X98 A;  5IJQ A;  2GSO A;  4TN0 A;  3UN2 A;  1AJB A;  1E1Z P;  1FSU A;  1K7H A;  2IFY A;  1KH9 A;  1P49 A;  2GA3 A;  5EGH A;  4LRB A;  3WAY A;  5LRN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...