1VDKA

Crystal structure of fumarase from thermus thermophilus hb8
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
460
structure length
458
Chain Sequence
RIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEIVKKALKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Fumarate hydratase class II
publication title Crystal structure of fumarase from thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 173
structure length 458
sequence length 460
chains with identical sequence B
ec nomenclature ec 4.2.1.2: Fumarate hydratase.
pdb deposition date 2004-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1vdkA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1vdkA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1vdkA02
3NO9A 1B8FA 3RRPA 1I0AA 1K7WA 3CZOA 1W27A 1J3UA 1YISA 1FUQA 1C3CA 1DOFA 1EB4A 2HVGA 4HGVA 1GK3A 4NLEA 1HY1A 1T6JA 2X75A 2RJRA 1TJ7A 1YFEA 3RD8A 4C5UA 2OHYA 3R6QA 1JSWA 4ADMA 3UNVA 3OCEA 1KQ7A 4NSLA 5EYTA 1YFMA 2PTQA 2O7BA 1Y2MA 4FLCA 3GTDA 1GKJA 2RJSA 1FUPA 2PTSA 2PTRA 5F91A 1Q5NA 1XWOA 1U15A 3E04A 5D6BA 4CQ5A 4APAA 2E9FA 4APBA 5EYVA 2QVEA 2PFMA 1FURA 1T6PA 2O6YA 1AUWA 1FUOA 1HY0A 3R6YA 3BHGA 1VDKA 4C6GA 5HW2A 4C5RA 1RE5A 4EFCA 2O7FA 3NZ4A 3R6VA 4EEIA 2O78A 4BABA 1TJUA 1TJVA 5F92A 4MX2A 4BAAA 1C3UA 1DCNA 3TV2A 2QGAB 1TJWA 2NYNA 2O7EA 2O7DA 3QBPA 4V2QA 1GK2A 4ADLA 2NYFA 1K62A 3OCFA 4C5SA 2FUSA 1GKMA 4V2RA 2J91A 3KDZA 2VD6A 3GZHA 1U16A 3C8TA 4FFXA 3KDYA 2YIIA
chains in the Genus database with same CATH superfamily
3NO9A 1B8FA 1XMDA 3RRPA 2I7DA 1I0AA 4MUMA 1K7WA 3CZOA 1W27A 1J3UA 1YISA 2JAOA 1FUQA 3U13A 2JAUA 1C3CA 1DOFA 1Q92A 1EB4A 2JAWA 4E88A 2HVGA 4HGVA 1GK3A 4NLEA 1HY1A 1T6JA 2X75A 2RJRA 1TJ7A 1Z4PX 3CRVA 2FENA 4WNLA 1YFEA 1Z4QA 3RD8A 4C5UA 2OHYA 3R6QA 1JSWA 3F4TA 4ADMA 3OCEA 4L6CA 2VSFA 3U19A 3UNVA 2JARA 5M0IA 1KQ7A 3CRW1 4NSLA 5EYTA 1YFMA 2PTQA 2O7BA 1Y2MA 4FLCA 1Z4MA 3GTDA 1GKJA 2FELA 2RJSA 1FUPA 2PTSA 2PTRA 4L57A 1Q5NA 5F91A 1XWOA 1U15A 3E04A 2VL7A 5D6BA 3BWVA 4CQ5A 4APAA 2E9FA 4APBA 5EYVA 2D27A 2QVEA 2PFMA 1FURA 4L6AA 1T6PA 2O6YA 1AUWA 1FUOA 1HY0A 3R6YA 3BHGA 1U0LA 1VDKA 4C6GA 4YIHA 5HW2A 4C5RA 1Z4JA 1RE5A 4EFCA 2O7FA 3NZ4A 1Z4LA 3F4SA 3R6VA 4EEIA 1Z4IA 2O78A 4MWOA 5M0JA 4BABA 1TJUA 1TJVA 1Q91A 1T9HA 4NFLA 1IW7D 5F92A 3F4RA 5H8WA 4MX2A 4BAAA 4IQJM 2D28C 1C3UA 1DCNA 3TV2A 2QGAB 1TJWA 1XL7A 2NYNA 2O7EA 2O7DA 1XMCA 3QBPA 2YV5A 2RCNA 4V2QA 1Z4KA 1GK2A 4ADLA 2NYFA 1K62A 3OCFA 4C5SA 2FUSA 1XLYA 1GKMA 4YIKA 1XL8A 4V2RA 1MH9A 2J91A 3KDZA 2VD6A 4A15A 3GZHA 1U16A 3CI0K 3C8TA 4FFXA 3KDYA 2YIIA
chains in the Genus database with same CATH topology
3NO9A 1B8FA 3RRPA 1I0AA 1K7WA 3CZOA 1W27A 1J3UA 1YISA 1FUQA 1C3CA 1DOFA 1EB4A 2HVGA 4HGVA 1GK3A 4NLEA 1HY1A 1T6JA 2X75A 2RJRA 1TJ7A 1YFEA 3RD8A 4C5UA 2OHYA 3R6QA 1JSWA 4ADMA 3UNVA 3OCEA 1KQ7A 4NSLA 5EYTA 1YFMA 2PTQA 2O7BA 1Y2MA 4FLCA 3GTDA 1GKJA 2RJSA 1FUPA 2PTSA 2PTRA 5F91A 1Q5NA 1XWOA 1U15A 3E04A 5D6BA 4CQ5A 4APAA 2E9FA 4APBA 5EYVA 2QVEA 2PFMA 1FURA 1T6PA 2O6YA 1AUWA 1FUOA 1HY0A 3R6YA 3BHGA 1VDKA 4C6GA 5HW2A 4C5RA 1RE5A 4EFCA 2O7FA 3NZ4A 3R6VA 4EEIA 2O78A 4BABA 1TJUA 1TJVA 5F92A 4MX2A 4BAAA 1C3UA 1DCNA 3TV2A 2QGAB 1TJWA 2NYNA 2O7EA 2O7DA 3QBPA 4V2QA 1GK2A 4ADLA 2NYFA 1K62A 3OCFA 4C5SA 2FUSA 1GKMA 4V2RA 2J91A 3KDZA 2VD6A 3GZHA 1U16A 3C8TA 4FFXA 3KDYA 2YIIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NO9 A;  1B8F A;  3RRP A;  1I0A A;  1K7W A;  3CZO A;  1W27 A;  1J3U A;  1YIS A;  1FUQ A;  1C3C A;  1DOF A;  1EB4 A;  2HVG A;  4HGV A;  1GK3 A;  4NLE A;  1HY1 A;  1T6J A;  2X75 A;  2RJR A;  1TJ7 A;  1YFE A;  3RD8 A;  4C5U A;  2OHY A;  3R6Q A;  1JSW A;  4ADM A;  3UNV A;  3OCE A;  1KQ7 A;  4NSL A;  5EYT A;  1YFM A;  2PTQ A;  2O7B A;  1Y2M A;  4FLC A;  3GTD A;  1GKJ A;  2RJS A;  1FUP A;  2PTS A;  2PTR A;  5F91 A;  1Q5N A;  1XWO A;  1U15 A;  3E04 A;  5D6B A;  4CQ5 A;  4APA A;  2E9F A;  4APB A;  5EYV A;  2QVE A;  2PFM A;  1FUR A;  1T6P A;  2O6Y A;  1AUW A;  1FUO A;  1HY0 A;  3R6Y A;  3BHG A;  1VDK A;  4C6G A;  5HW2 A;  4C5R A;  1RE5 A;  4EFC A;  2O7F A;  3NZ4 A;  3R6V A;  4EEI A;  2O78 A;  4BAB A;  1TJU A;  1TJV A;  5F92 A;  4MX2 A;  4BAA A;  1C3U A;  1DCN A;  3TV2 A;  2QGA B;  1TJW A;  2NYN A;  2O7E A;  2O7D A;  3QBP A;  4V2Q A;  1GK2 A;  4ADL A;  2NYF A;  1K62 A;  3OCF A;  4C5S A;  2FUS A;  1GKM A;  4V2R A;  2J91 A;  3KDZ A;  2VD6 A;  3GZH A;  1U16 A;  3C8T A;  4FFX A;  3KDY A;  2YII A; 
#chains in the Genus database with same CATH topology
 3NO9 A;  1B8F A;  1XMD A;  3RRP A;  2I7D A;  1I0A A;  4MUM A;  1K7W A;  3CZO A;  1W27 A;  1J3U A;  1YIS A;  2JAO A;  1FUQ A;  3U13 A;  2JAU A;  1C3C A;  1DOF A;  1Q92 A;  1EB4 A;  2JAW A;  4E88 A;  2HVG A;  4HGV A;  1GK3 A;  4NLE A;  1HY1 A;  1T6J A;  2X75 A;  2RJR A;  1TJ7 A;  1Z4P X;  3CRV A;  2FEN A;  4WNL A;  1YFE A;  1Z4Q A;  3RD8 A;  4C5U A;  2OHY A;  3R6Q A;  1JSW A;  3F4T A;  4ADM A;  3OCE A;  4L6C A;  2VSF A;  3U19 A;  3UNV A;  2JAR A;  5M0I A;  1KQ7 A;  3CRW 1;  4NSL A;  5EYT A;  1YFM A;  2PTQ A;  2O7B A;  1Y2M A;  4FLC A;  1Z4M A;  3GTD A;  1GKJ A;  2FEL A;  2RJS A;  1FUP A;  2PTS A;  2PTR A;  4L57 A;  1Q5N A;  5F91 A;  1XWO A;  1U15 A;  3E04 A;  2VL7 A;  5D6B A;  3BWV A;  4CQ5 A;  4APA A;  2E9F A;  4APB A;  5EYV A;  2D27 A;  2QVE A;  2PFM A;  1FUR A;  4L6A A;  1T6P A;  2O6Y A;  1AUW A;  1FUO A;  1HY0 A;  3R6Y A;  3BHG A;  1U0L A;  1VDK A;  4C6G A;  4YIH A;  5HW2 A;  4C5R A;  1Z4J A;  1RE5 A;  4EFC A;  2O7F A;  3NZ4 A;  1Z4L A;  3F4S A;  3R6V A;  4EEI A;  1Z4I A;  2O78 A;  4MWO A;  5M0J A;  4BAB A;  1TJU A;  1TJV A;  1Q91 A;  1T9H A;  4NFL A;  1IW7 D;  5F92 A;  3F4R A;  5H8W A;  4MX2 A;  4BAA A;  4IQJ M;  2D28 C;  1C3U A;  1DCN A;  3TV2 A;  2QGA B;  1TJW A;  1XL7 A;  2NYN A;  2O7E A;  2O7D A;  1XMC A;  3QBP A;  2YV5 A;  2RCN A;  4V2Q A;  1Z4K A;  1GK2 A;  4ADL A;  2NYF A;  1K62 A;  3OCF A;  4C5S A;  2FUS A;  1XLY A;  1GKM A;  4YIK A;  1XL8 A;  4V2R A;  1MH9 A;  2J91 A;  3KDZ A;  2VD6 A;  4A15 A;  3GZH A;  1U16 A;  3CI0 K;  3C8T A;  4FFX A;  3KDY A;  2YII A; 
#chains in the Genus database with same CATH homology
 3NO9 A;  1B8F A;  3RRP A;  1I0A A;  1K7W A;  3CZO A;  1W27 A;  1J3U A;  1YIS A;  1FUQ A;  1C3C A;  1DOF A;  1EB4 A;  2HVG A;  4HGV A;  1GK3 A;  4NLE A;  1HY1 A;  1T6J A;  2X75 A;  2RJR A;  1TJ7 A;  1YFE A;  3RD8 A;  4C5U A;  2OHY A;  3R6Q A;  1JSW A;  4ADM A;  3UNV A;  3OCE A;  1KQ7 A;  4NSL A;  5EYT A;  1YFM A;  2PTQ A;  2O7B A;  1Y2M A;  4FLC A;  3GTD A;  1GKJ A;  2RJS A;  1FUP A;  2PTS A;  2PTR A;  5F91 A;  1Q5N A;  1XWO A;  1U15 A;  3E04 A;  5D6B A;  4CQ5 A;  4APA A;  2E9F A;  4APB A;  5EYV A;  2QVE A;  2PFM A;  1FUR A;  1T6P A;  2O6Y A;  1AUW A;  1FUO A;  1HY0 A;  3R6Y A;  3BHG A;  1VDK A;  4C6G A;  5HW2 A;  4C5R A;  1RE5 A;  4EFC A;  2O7F A;  3NZ4 A;  3R6V A;  4EEI A;  2O78 A;  4BAB A;  1TJU A;  1TJV A;  5F92 A;  4MX2 A;  4BAA A;  1C3U A;  1DCN A;  3TV2 A;  2QGA B;  1TJW A;  2NYN A;  2O7E A;  2O7D A;  3QBP A;  4V2Q A;  1GK2 A;  4ADL A;  2NYF A;  1K62 A;  3OCF A;  4C5S A;  2FUS A;  1GKM A;  4V2R A;  2J91 A;  3KDZ A;  2VD6 A;  3GZH A;  1U16 A;  3C8T A;  4FFX A;  3KDY A;  2YII A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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