1VI4A

Crystal structure of regulator of ribonuclease activity a protein 1
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
162
structure length
162
Chain Sequence
MRDITPDLCDKYESQVTLLNLPLQNFGQRSAFWGEIVTVRCYHDNSKVRDVLSQNGKGKVLVVDGHGSCHKALMGDQLAILAIKNDWEGVIIYGAVRDVVAMSEMDLGIKALGTSPFKTEKRGAGQVNVTLTMQNQIVEPGDYLYADWNGILMSETALDVAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Regulator of ribonuclease activity A protein 1
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
source organism Vibrio cholerae
total genus 45
structure length 162
sequence length 162
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1vi4A00
3NOJA 2PCNA 3C8OA 1VI4A 2YJVA 1J3LA 1Q5XA 2YJTA 3K4IA 1NXJA
chains in the Genus database with same CATH superfamily
1C3OB 1Z8LA 4TWEA 3EIFA 1CX8A 3TYXA 1ZYMA 5F9MA 4KNGE 4C8CA 1A9XB 5K99A 4TJVA 3D7HA 4CDKA 3EZBA 2GP4A 4P4IA 4P45A 3S9LA 2PVWA 4MCSA 4C99A 2HI6A 4C9RA 4W9YA 3BHXA 3S9NA 4C8FA 4C84A 1XF1A 1ZRSA 2EZCA 2XEIA 3FEEA 5FD8A 3TLGB 4E94A 3I6SA 4CDJA 4C8PA 3I74A 4TJXA 4MJXA 3K9TA 3T07A 2OLSA 2B0AA 3T5MA 3TLZA 2C6CA 4JZ0A 4EYSA 4P4BA 3RBUA 2XEGA 4OC4A 1KC7A 1JDEA 2PCNA 1BXRB 4P4DA 5IR2A 4LQGA 4OMEA 1T36B 2AUNA 1C30B 4P4JA 3VTAA 2EK8A 5F1YA 3C8OA 4OC2A 4MCPA 2FM4A 2JBJA 4J0NA 2CIJA 4NGRA 4P44A 1GGOA 4X3RA 2C5QA 3BI0A 3T0TA 3U1BA 4C8TA 1Y9ZA 2C6PA 3G23A 3SR3A 4C9EA 4COBA 1CS0B 1VBGA 4YN3A 3TLAA 4INJA 5JYBA 4NGTA 2OOTA 3FF3A 3SJFA 4C9VA 5IB9A 5JVLA 2YJVA 4C85A 2XEJA 2D0OA 5D29A 1R61A 2HWGA 4OC1A 3T05A 4M8DA 3D7GA 3FECA 3BXMA 4JYWA 2D0PA 3NOJA 3ICUA 1KBLA 1EZAA 3SJGA 2PVVA 4C9AA 2HROA 2C6GA 4CO9A 3EZAA 2EK9A 3EZEA 4NGNA 5ELYA 3KASA 2EZBA 1Q5XA 1M6VB 3IWWA 1NXJA 4OC3A 4OC0A 2MP0A 4NGPA 2E28A 4IIXA 1EZBA 4C9UA 1CE8B 1JDBC 3GJZA 1ZL0A 5F5XA 3D7DA 4NGQA 1NBWA 1WVMA 4COGA 4OC5A 4H1HA 4MCRA 4C8AA 2AUMA 5F09A 2DIKA 3BI1A 3TLEA 3TLBA 1J3LA 2EZAA 4P4FA 4E5SA 1DE4C 4CZ1A 1VBHA 3D7FA 1KEEB 2XEFA 2R82A 3S9MA 4C8UA 3TLYA 4NGSA 4JVOA 3K4IA 2OR4A 3TLGA 2X0SA 3FEDA 4MI1A 3KRVA 4NGMA 1VI4A 3IIBA 4C86A 1V6CA 4IIYA 3SJEA 3TLCA 3SJXA 2YJTA 4MCQA 2JBKA 1DIKA 4P4EA
chains in the Genus database with same CATH topology
3NOJA 2PCNA 3C8OA 1VI4A 2YJVA 1J3LA 1Q5XA 2YJTA 3K4IA 1NXJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NOJ A;  2PCN A;  3C8O A;  1VI4 A;  2YJV A;  1J3L A;  1Q5X A;  2YJT A;  3K4I A;  1NXJ A; 
#chains in the Genus database with same CATH topology
 1C3O B;  1Z8L A;  4TWE A;  3EIF A;  1CX8 A;  3TYX A;  1ZYM A;  5F9M A;  4KNG E;  4C8C A;  1A9X B;  5K99 A;  4TJV A;  3D7H A;  4CDK A;  3EZB A;  2GP4 A;  4P4I A;  4P45 A;  3S9L A;  2PVW A;  4MCS A;  4C99 A;  2HI6 A;  4C9R A;  4W9Y A;  3BHX A;  3S9N A;  4C8F A;  4C84 A;  1XF1 A;  1ZRS A;  2EZC A;  2XEI A;  3FEE A;  5FD8 A;  3TLG B;  4E94 A;  3I6S A;  4CDJ A;  4C8P A;  3I74 A;  4TJX A;  4MJX A;  3K9T A;  3T07 A;  2OLS A;  2B0A A;  3T5M A;  3TLZ A;  2C6C A;  4JZ0 A;  4EYS A;  4P4B A;  3RBU A;  2XEG A;  4OC4 A;  1KC7 A;  1JDE A;  2PCN A;  1BXR B;  4P4D A;  5IR2 A;  4LQG A;  4OME A;  1T36 B;  2AUN A;  1C30 B;  4P4J A;  3VTA A;  2EK8 A;  5F1Y A;  3C8O A;  4OC2 A;  4MCP A;  2FM4 A;  2JBJ A;  4J0N A;  2CIJ A;  4NGR A;  4P44 A;  1GGO A;  4X3R A;  2C5Q A;  3BI0 A;  3T0T A;  3U1B A;  4C8T A;  1Y9Z A;  2C6P A;  3G23 A;  3SR3 A;  4C9E A;  4COB A;  1CS0 B;  1VBG A;  4YN3 A;  3TLA A;  4INJ A;  5JYB A;  4NGT A;  2OOT A;  3FF3 A;  3SJF A;  4C9V A;  5IB9 A;  5JVL A;  2YJV A;  4C85 A;  2XEJ A;  2D0O A;  5D29 A;  1R61 A;  2HWG A;  4OC1 A;  3T05 A;  4M8D A;  3D7G A;  3FEC A;  3BXM A;  4JYW A;  2D0P A;  3NOJ A;  3ICU A;  1KBL A;  1EZA A;  3SJG A;  2PVV A;  4C9A A;  2HRO A;  2C6G A;  4CO9 A;  3EZA A;  2EK9 A;  3EZE A;  4NGN A;  5ELY A;  3KAS A;  2EZB A;  1Q5X A;  1M6V B;  3IWW A;  1NXJ A;  4OC3 A;  4OC0 A;  2MP0 A;  4NGP A;  2E28 A;  4IIX A;  1EZB A;  4C9U A;  1CE8 B;  1JDB C;  3GJZ A;  1ZL0 A;  5F5X A;  3D7D A;  4NGQ A;  1NBW A;  1WVM A;  4COG A;  4OC5 A;  4H1H A;  4MCR A;  4C8A A;  2AUM A;  5F09 A;  2DIK A;  3BI1 A;  3TLE A;  3TLB A;  1J3L A;  2EZA A;  4P4F A;  4E5S A;  1DE4 C;  4CZ1 A;  1VBH A;  3D7F A;  1KEE B;  2XEF A;  2R82 A;  3S9M A;  4C8U A;  3TLY A;  4NGS A;  4JVO A;  3K4I A;  2OR4 A;  3TLG A;  2X0S A;  3FED A;  4MI1 A;  3KRV A;  4NGM A;  1VI4 A;  3IIB A;  4C86 A;  1V6C A;  4IIY A;  3SJE A;  3TLC A;  3SJX A;  2YJT A;  4MCQ A;  2JBK A;  1DIK A;  4P4E A; 
#chains in the Genus database with same CATH homology
 3NOJ A;  2PCN A;  3C8O A;  1VI4 A;  2YJV A;  1J3L A;  1Q5X A;  2YJT A;  3K4I A;  1NXJ A; 
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similar chains in the Genus database (?% sequence similarity)
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