1WK8A

Isoleucyl-trna synthetase editing domain complexed with the pre-transfer editing substrate analogue, val-ams
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
182
structure length
182
Chain Sequence
QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLLFKEESY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Isoleucyl-tRNA synthetase
publication title Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
pubmed doi rcsb
source organism Thermus thermophilus
total genus 54
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature ec 6.1.1.5: Isoleucine--tRNA ligase.
pdb deposition date 2004-05-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 1wk8A00
1ILEA 1OBCA 4K48A 3ZGZA 1WK9A 1QU2A 1IVSA 3ZJUA 4ARCA 2WFDA 3PZ6A 4K47A 2V0GA 1WK8A 2BYTA 1H3NA 5AGTA 5AGRA 2V0CA 3PZ0A 4AQ7A 3ZJVA 1QU3A 1FFYA 1WNZA 1UDZA 3PZ5A 2AJGA 1WNYA 5AGIA 2AJHA 1GAXA 1WKBA 1WKAA 2AJIA 4CQNA 1UE0A 2WFEA 1JZQA 1OBHA 5AGSA 4AS1A 1JZSA 5AGHA 3O0AA 5AGJA 4ARIA 1WZ2A 2BTEA 3ZJTA 2WFGA
chains in the Genus database with same CATH superfamily
1ILEA 1OBCA 4K48A 3ZGZA 1WK9A 1QU2A 1IVSA 3ZJUA 4ARCA 2WFDA 3PZ6A 4K47A 2V0GA 1WK8A 2BYTA 1H3NA 5AGTA 5AGRA 2V0CA 3PZ0A 4AQ7A 3ZJVA 1QU3A 1FFYA 1WNZA 1UDZA 3PZ5A 2AJGA 1WNYA 5AGIA 2AJHA 1GAXA 1WKBA 1WKAA 2AJIA 4CQNA 1UE0A 2WFEA 1JZQA 1OBHA 5AGSA 4AS1A 1JZSA 5AGHA 3O0AA 5AGJA 4ARIA 1WZ2A 2BTEA 3ZJTA 2WFGA
chains in the Genus database with same CATH topology
1ILEA 1OBCA 4K48A 3ZGZA 1WK9A 1QU2A 1IVSA 3ZJUA 4ARCA 2WFDA 3PZ6A 4K47A 2V0GA 1WK8A 2BYTA 1H3NA 5AGTA 5AGRA 2V0CA 3PZ0A 4AQ7A 3ZJVA 1QU3A 1FFYA 1WNZA 1UDZA 3PZ5A 2AJGA 1WNYA 5AGIA 2AJHA 1GAXA 1WKBA 1WKAA 2AJIA 4CQNA 1UE0A 2WFEA 1JZQA 1OBHA 5AGSA 4AS1A 1JZSA 5AGHA 3O0AA 5AGJA 4ARIA 1WZ2A 2BTEA 3ZJTA 2WFGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ILE A;  1OBC A;  4K48 A;  3ZGZ A;  1WK9 A;  1QU2 A;  1IVS A;  3ZJU A;  4ARC A;  2WFD A;  3PZ6 A;  4K47 A;  2V0G A;  1WK8 A;  2BYT A;  1H3N A;  5AGT A;  5AGR A;  2V0C A;  3PZ0 A;  4AQ7 A;  3ZJV A;  1QU3 A;  1FFY A;  1WNZ A;  1UDZ A;  3PZ5 A;  2AJG A;  1WNY A;  5AGI A;  2AJH A;  1GAX A;  1WKB A;  1WKA A;  2AJI A;  4CQN A;  1UE0 A;  2WFE A;  1JZQ A;  1OBH A;  5AGS A;  4AS1 A;  1JZS A;  5AGH A;  3O0A A;  5AGJ A;  4ARI A;  1WZ2 A;  2BTE A;  3ZJT A;  2WFG A; 
#chains in the Genus database with same CATH topology
 1ILE A;  1OBC A;  4K48 A;  3ZGZ A;  1WK9 A;  1QU2 A;  1IVS A;  3ZJU A;  4ARC A;  2WFD A;  3PZ6 A;  4K47 A;  2V0G A;  1WK8 A;  2BYT A;  1H3N A;  5AGT A;  5AGR A;  2V0C A;  3PZ0 A;  4AQ7 A;  3ZJV A;  1QU3 A;  1FFY A;  1WNZ A;  1UDZ A;  3PZ5 A;  2AJG A;  1WNY A;  5AGI A;  2AJH A;  1GAX A;  1WKB A;  1WKA A;  2AJI A;  4CQN A;  1UE0 A;  2WFE A;  1JZQ A;  1OBH A;  5AGS A;  4AS1 A;  1JZS A;  5AGH A;  3O0A A;  5AGJ A;  4ARI A;  1WZ2 A;  2BTE A;  3ZJT A;  2WFG A; 
#chains in the Genus database with same CATH homology
 1ILE A;  1OBC A;  4K48 A;  3ZGZ A;  1WK9 A;  1QU2 A;  1IVS A;  3ZJU A;  4ARC A;  2WFD A;  3PZ6 A;  4K47 A;  2V0G A;  1WK8 A;  2BYT A;  1H3N A;  5AGT A;  5AGR A;  2V0C A;  3PZ0 A;  4AQ7 A;  3ZJV A;  1QU3 A;  1FFY A;  1WNZ A;  1UDZ A;  3PZ5 A;  2AJG A;  1WNY A;  5AGI A;  2AJH A;  1GAX A;  1WKB A;  1WKA A;  2AJI A;  4CQN A;  1UE0 A;  2WFE A;  1JZQ A;  1OBH A;  5AGS A;  4AS1 A;  1JZS A;  5AGH A;  3O0A A;  5AGJ A;  4ARI A;  1WZ2 A;  2BTE A;  3ZJT A;  2WFG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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