1WNGA

Structural study of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable diphthine synthase
publication title Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1wngA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1wngA01
2E8QA 2EK2A 2ED5A 2HUXA 2EN5A 2PCMA 2Z6RA 5HW4A 2YBOA 2HUVA 2P6LA 2OWGA 2E8SA 2EHCA 2EGSA 2P6IA 1S4DA 1VCEA 2ZVCA 1VA0A 2DV5A 3NDCA 2EGBA 3NEIA 3FFYA 4E16A 1PJTA 1V9AA 2HR8A 2BB3A 1CBFA 3NUTA 1WDEA 2DEKA 2EL0A 2ELEA 1PJSA 2P9DA 1VE2A 2HUTA 2ZVBA 2EL2A 1WYZA 2PB4A 2OWFA 2EMRA 3HH1A 3FQ6A 2DXVA 2HUQA 2E07A 2DV3A 2EEQA 2P6KA 2DXWA 2PB5A 2E17A 2E4NA 2E8HA 3ND1A 2EMUA 2DSIA 2OWUA 2ENIA 2EJZA 2E0KA 2E4RA 2DSHA 2PCIA 2E8RA 2E0NA 2QBUA 1PJQA 2OWVA 2E7RA 2EK3A 2P5CA 2EHLA 2OWKA 2EGLA 2DXXA 2EL3A 2PCGA 2PCAA 2P5FA 2EKAA 2P2XA 2DSGA 2EH2A 2ELDA 3I4TA 2ED3A 2PCHA 2P6DA 2PCKA 2CBFA 2YBQA 2E15A 2EJJA 2EJKA 2EH4A 2DV7A 2NPNA 2E16A 2DV4A 2EK7A 3KWPA 2PB6A 1WNGA 2EL1A 2EK4A 2EH5A 2E08A 1VHVA
chains in the Genus database with same CATH superfamily
3UV6A 2E8QA 2EK2A 2ED5A 2HUXA 2EN5A 2PCMA 2Z6RA 5HW4A 2YBOA 2HUVA 2P6LA 2OWGA 3F7TA 2E8SA 2EHCA 3KE9A 3UV3A 2EGSA 2P6IA 1S4DA 1VCEA 2ZVCA 1VA0A 2DV5A 3NDCA 2EGBA 3NEIA 3FFYA 4E16A 1PJTA 3T0GA 1V9AA 2HR8A 4EB3A 2BB3A 1CBFA 3NUTA 1WDEA 2DEKA 3KELA 2EL0A 2ELEA 1PJSA 2P9DA 1VE2A 2HUTA 2ZVBA 2EL2A 1WYZA 2PB4A 3T0FA 2OWFA 2EMRA 3HH1A 3SZUA 3KEFA 3FQ6A 3UTDA 2DXVA 2HUQA 2E07A 2DV3A 2EEQA 4MUXA 2P6KA 2DXWA 2PB5A 2E17A 3ZGLA 2E4NA 3UTCA 2E8HA 3ND1A 2EMUA 4H4EA 3SZOA 2DSIA 2OWUA 2ENIA 2EJZA 2E0KA 2E4RA 4MUYA 3KE8A 2DSHA 3DNFA 2PCIA 2E8RA 3UWMA 2E0NA 2QBUA 1PJQA 2OWVA 2E7RA 2EK3A 2P5CA 4MV5A 2EHLA 2OWKA 2EGLA 2DXXA 2EL3A 2KYYA 3URKA 2PCGA 2PCAA 2P5FA 3UV7A 2EKAA 2P2XA 2DSGA 2EH2A 2ELDA 3I4TA 2ED3A 2PCHA 2P6DA 2PCKA 3LMMA 2CBFA 2YBQA 2E15A 2EJJA 2EJKA 2EH4A 4MV0A 3SZLA 4H4DA 3KEMA 3TIXB 2DV7A 2NPNA 2E16A 4N7BA 2DV4A 2EK7A 3KWPA 2PB6A 3ZGNA 1WNGA 2EL1A 2EK4A 4H4CA 2EH5A 2E08A 1VHVA
chains in the Genus database with same CATH topology
3UV6A 2E8QA 2EK2A 2ED5A 2HUXA 2EN5A 2PCMA 2Z6RA 5HW4A 2YBOA 2HUVA 2P6LA 2OWGA 3F7TA 2E8SA 2EHCA 3KE9A 3UV3A 2EGSA 2P6IA 1S4DA 1VCEA 2ZVCA 1VA0A 2DV5A 3NDCA 2EGBA 3NEIA 3FFYA 4E16A 1PJTA 3T0GA 1V9AA 2HR8A 4EB3A 2BB3A 1CBFA 3NUTA 1WDEA 2DEKA 3KELA 2EL0A 2ELEA 1PJSA 2P9DA 1VE2A 2HUTA 2ZVBA 2EL2A 1WYZA 2PB4A 3T0FA 2OWFA 2EMRA 3HH1A 3SZUA 3KEFA 3FQ6A 3UTDA 2DXVA 2HUQA 2E07A 2DV3A 2EEQA 4MUXA 2P6KA 2DXWA 2PB5A 2E17A 3ZGLA 2E4NA 3UTCA 2E8HA 3ND1A 2EMUA 4H4EA 3SZOA 2DSIA 2OWUA 2ENIA 2EJZA 2E0KA 2E4RA 4MUYA 3KE8A 2DSHA 3DNFA 2PCIA 2E8RA 3UWMA 2E0NA 2QBUA 1PJQA 2OWVA 2E7RA 2EK3A 2P5CA 4MV5A 2EHLA 2OWKA 2EGLA 2DXXA 2EL3A 2KYYA 3URKA 2PCGA 2PCAA 2P5FA 3UV7A 2EKAA 2P2XA 2DSGA 2EH2A 2ELDA 3I4TA 2ED3A 2PCHA 2P6DA 2PCKA 3LMMA 2CBFA 2YBQA 2E15A 2EJJA 2EJKA 2EH4A 4MV0A 3SZLA 4H4DA 3KEMA 3TIXB 2DV7A 2NPNA 2E16A 4N7BA 2DV4A 2EK7A 3KWPA 2PB6A 3ZGNA 1WNGA 2EL1A 2EK4A 4H4CA 2EH5A 2E08A 1VHVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E8Q A;  2EK2 A;  2ED5 A;  2HUX A;  2EN5 A;  2PCM A;  2Z6R A;  5HW4 A;  2YBO A;  2HUV A;  2P6L A;  2OWG A;  2E8S A;  2EHC A;  2EGS A;  2P6I A;  1S4D A;  1VCE A;  2ZVC A;  1VA0 A;  2DV5 A;  3NDC A;  2EGB A;  3NEI A;  3FFY A;  4E16 A;  1PJT A;  1V9A A;  2HR8 A;  2BB3 A;  1CBF A;  3NUT A;  1WDE A;  2DEK A;  2EL0 A;  2ELE A;  1PJS A;  2P9D A;  1VE2 A;  2HUT A;  2ZVB A;  2EL2 A;  1WYZ A;  2PB4 A;  2OWF A;  2EMR A;  3HH1 A;  3FQ6 A;  2DXV A;  2HUQ A;  2E07 A;  2DV3 A;  2EEQ A;  2P6K A;  2DXW A;  2PB5 A;  2E17 A;  2E4N A;  2E8H A;  3ND1 A;  2EMU A;  2DSI A;  2OWU A;  2ENI A;  2EJZ A;  2E0K A;  2E4R A;  2DSH A;  2PCI A;  2E8R A;  2E0N A;  2QBU A;  1PJQ A;  2OWV A;  2E7R A;  2EK3 A;  2P5C A;  2EHL A;  2OWK A;  2EGL A;  2DXX A;  2EL3 A;  2PCG A;  2PCA A;  2P5F A;  2EKA A;  2P2X A;  2DSG A;  2EH2 A;  2ELD A;  3I4T A;  2ED3 A;  2PCH A;  2P6D A;  2PCK A;  2CBF A;  2YBQ A;  2E15 A;  2EJJ A;  2EJK A;  2EH4 A;  2DV7 A;  2NPN A;  2E16 A;  2DV4 A;  2EK7 A;  3KWP A;  2PB6 A;  1WNG A;  2EL1 A;  2EK4 A;  2EH5 A;  2E08 A;  1VHV A; 
#chains in the Genus database with same CATH topology
 3UV6 A;  2E8Q A;  2EK2 A;  2ED5 A;  2HUX A;  2EN5 A;  2PCM A;  2Z6R A;  5HW4 A;  2YBO A;  2HUV A;  2P6L A;  2OWG A;  3F7T A;  2E8S A;  2EHC A;  3KE9 A;  3UV3 A;  2EGS A;  2P6I A;  1S4D A;  1VCE A;  2ZVC A;  1VA0 A;  2DV5 A;  3NDC A;  2EGB A;  3NEI A;  3FFY A;  4E16 A;  1PJT A;  3T0G A;  1V9A A;  2HR8 A;  4EB3 A;  2BB3 A;  1CBF A;  3NUT A;  1WDE A;  2DEK A;  3KEL A;  2EL0 A;  2ELE A;  1PJS A;  2P9D A;  1VE2 A;  2HUT A;  2ZVB A;  2EL2 A;  1WYZ A;  2PB4 A;  3T0F A;  2OWF A;  2EMR A;  3HH1 A;  3SZU A;  3KEF A;  3FQ6 A;  3UTD A;  2DXV A;  2HUQ A;  2E07 A;  2DV3 A;  2EEQ A;  4MUX A;  2P6K A;  2DXW A;  2PB5 A;  2E17 A;  3ZGL A;  2E4N A;  3UTC A;  2E8H A;  3ND1 A;  2EMU A;  4H4E A;  3SZO A;  2DSI A;  2OWU A;  2ENI A;  2EJZ A;  2E0K A;  2E4R A;  4MUY A;  3KE8 A;  2DSH A;  3DNF A;  2PCI A;  2E8R A;  3UWM A;  2E0N A;  2QBU A;  1PJQ A;  2OWV A;  2E7R A;  2EK3 A;  2P5C A;  4MV5 A;  2EHL A;  2OWK A;  2EGL A;  2DXX A;  2EL3 A;  2KYY A;  3URK A;  2PCG A;  2PCA A;  2P5F A;  3UV7 A;  2EKA A;  2P2X A;  2DSG A;  2EH2 A;  2ELD A;  3I4T A;  2ED3 A;  2PCH A;  2P6D A;  2PCK A;  3LMM A;  2CBF A;  2YBQ A;  2E15 A;  2EJJ A;  2EJK A;  2EH4 A;  4MV0 A;  3SZL A;  4H4D A;  3KEM A;  3TIX B;  2DV7 A;  2NPN A;  2E16 A;  4N7B A;  2DV4 A;  2EK7 A;  3KWP A;  2PB6 A;  3ZGN A;  1WNG A;  2EL1 A;  2EK4 A;  4H4C A;  2EH5 A;  2E08 A;  1VHV A; 
#chains in the Genus database with same CATH homology
 3UV6 A;  2E8Q A;  2EK2 A;  2ED5 A;  2HUX A;  2EN5 A;  2PCM A;  2Z6R A;  5HW4 A;  2YBO A;  2HUV A;  2P6L A;  2OWG A;  3F7T A;  2E8S A;  2EHC A;  3KE9 A;  3UV3 A;  2EGS A;  2P6I A;  1S4D A;  1VCE A;  2ZVC A;  1VA0 A;  2DV5 A;  3NDC A;  2EGB A;  3NEI A;  3FFY A;  4E16 A;  1PJT A;  3T0G A;  1V9A A;  2HR8 A;  4EB3 A;  2BB3 A;  1CBF A;  3NUT A;  1WDE A;  2DEK A;  3KEL A;  2EL0 A;  2ELE A;  1PJS A;  2P9D A;  1VE2 A;  2HUT A;  2ZVB A;  2EL2 A;  1WYZ A;  2PB4 A;  3T0F A;  2OWF A;  2EMR A;  3HH1 A;  3SZU A;  3KEF A;  3FQ6 A;  3UTD A;  2DXV A;  2HUQ A;  2E07 A;  2DV3 A;  2EEQ A;  4MUX A;  2P6K A;  2DXW A;  2PB5 A;  2E17 A;  3ZGL A;  2E4N A;  3UTC A;  2E8H A;  3ND1 A;  2EMU A;  4H4E A;  3SZO A;  2DSI A;  2OWU A;  2ENI A;  2EJZ A;  2E0K A;  2E4R A;  4MUY A;  3KE8 A;  2DSH A;  3DNF A;  2PCI A;  2E8R A;  3UWM A;  2E0N A;  2QBU A;  1PJQ A;  2OWV A;  2E7R A;  2EK3 A;  2P5C A;  4MV5 A;  2EHL A;  2OWK A;  2EGL A;  2DXX A;  2EL3 A;  2KYY A;  3URK A;  2PCG A;  2PCA A;  2P5F A;  3UV7 A;  2EKA A;  2P2X A;  2DSG A;  2EH2 A;  2ELD A;  3I4T A;  2ED3 A;  2PCH A;  2P6D A;  2PCK A;  3LMM A;  2CBF A;  2YBQ A;  2E15 A;  2EJJ A;  2EJK A;  2EH4 A;  4MV0 A;  3SZL A;  4H4D A;  3KEM A;  3TIX B;  2DV7 A;  2NPN A;  2E16 A;  4N7B A;  2DV4 A;  2EK7 A;  3KWP A;  2PB6 A;  3ZGN A;  1WNG A;  2EL1 A;  2EK4 A;  4H4C A;  2EH5 A;  2E08 A;  1VHV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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