1WRTR

Nmr study of apo trp repressor
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Operon repressor
molecule keywords APO TRP REPRESSOR
publication title Refined solution structures of the Escherichia coli trp holo- and aporepressor.
pubmed doi rcsb
total genus 19
structure length 104
sequence length 104
chains with identical sequence S
ec nomenclature
pdb deposition date 1995-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1wrtR00
2OZ9R 3SSWN 1JHGA 3SSXN 1WRTR 1ZT9A 2XDIA 3FRWA 1MI7R 1RCSA 3G1CA 1CO0A 3WRPA 1TRRA 1WRPR 1TROA 3KORA 1WRSR
chains in the Genus database with same CATH superfamily
4YPYA 3IEFA 3SSWN 4YQ1A 4YQBA 4YVKA 4MCBA 1MI7R 4YVHA 3QUVA 1RCSA 1WRPR 3KNUA 4YVIA 4IG6A 5D9FA 1WRTR 4YQNA 4H3ZA 3AXZA 4YVGA 4YQ6A 4YPXA 1JHGA 4MCCA 4YPWA 4YQKA 3FRWA 4YQ2A 4YQLA 4YQJA 4YQCA 4YPZA 1TRRA 1TROA 1P9PA 1UAMA 4MCDA 4YQQA 4YQ9A 3KY7A 4YQTA 4YQSA 1UAJA 4YQIA 2XDIA 4YQ8A 4YQ7A 3G1CA 1CO0A 3WRPA 4YQDA 4YQPA 3SSXN 1WRSR 2OZ9R 1OY5A 4YQGA 1UALA 1UAKA 4YQ4A 4H3YA 1ZT9A 4YQ5A 4YQAA 4YQRA 4YQ3A 4YVJA 3KORA 4YQOA 4YQ0A
chains in the Genus database with same CATH topology
2OZ9R 3SSWN 1JHGA 3SSXN 1WRTR 1ZT9A 2XDIA 3FRWA 1MI7R 1RCSA 3G1CA 1CO0A 3WRPA 1TRRA 1WRPR 1TROA 3KORA 1WRSR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ9 R;  3SSW N;  1JHG A;  3SSX N;  1WRT R;  1ZT9 A;  2XDI A;  3FRW A;  1MI7 R;  1RCS A;  3G1C A;  1CO0 A;  3WRP A;  1TRR A;  1WRP R;  1TRO A;  3KOR A;  1WRS R; 
#chains in the Genus database with same CATH topology
 4YPY A;  3IEF A;  3SSW N;  4YQ1 A;  4YQB A;  4YVK A;  4MCB A;  1MI7 R;  4YVH A;  3QUV A;  1RCS A;  1WRP R;  3KNU A;  4YVI A;  4IG6 A;  5D9F A;  1WRT R;  4YQN A;  4H3Z A;  3AXZ A;  4YVG A;  4YQ6 A;  4YPX A;  1JHG A;  4MCC A;  4YPW A;  4YQK A;  3FRW A;  4YQ2 A;  4YQL A;  4YQJ A;  4YQC A;  4YPZ A;  1TRR A;  1TRO A;  1P9P A;  1UAM A;  4MCD A;  4YQQ A;  4YQ9 A;  3KY7 A;  4YQT A;  4YQS A;  1UAJ A;  4YQI A;  2XDI A;  4YQ8 A;  4YQ7 A;  3G1C A;  1CO0 A;  3WRP A;  4YQD A;  4YQP A;  3SSX N;  1WRS R;  2OZ9 R;  1OY5 A;  4YQG A;  1UAL A;  1UAK A;  4YQ4 A;  4H3Y A;  1ZT9 A;  4YQ5 A;  4YQA A;  4YQR A;  4YQ3 A;  4YVJ A;  3KOR A;  4YQO A;  4YQ0 A; 
#chains in the Genus database with same CATH homology
 2OZ9 R;  3SSW N;  1JHG A;  3SSX N;  1WRT R;  1ZT9 A;  2XDI A;  3FRW A;  1MI7 R;  1RCS A;  3G1C A;  1CO0 A;  3WRP A;  1TRR A;  1WRP R;  1TRO A;  3KOR A;  1WRS R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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