1XS3A

Solution structure analysis of the xc975 protein
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
80
structure length
80
Chain Sequence
MRKRPLDAETIRKLIESGLPEARVDVQGEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein XC975
publication title Letter to the Editor: NMR structure note - Solution structure of a bacterial BolA-like protein XC975 from a plant pathogen Xanthomonas campestris pv. campestris
pubmed doi rcsb
total genus 12
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2004-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01722 BolA BolA-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.90 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 BolA-like 1xs3A01
4PUIA 4PUGA 4PUHA 2NCLA 5LCIA 1NY8A 2MCQA 3TR3A 2KDNA 2MMAB 2MM9A 1XS3A 2KZ0A 3O2EA 1V60A 2DHMA
chains in the Genus database with same CATH superfamily
3LNVA 1PG3A 2WD9A 3S82A 1GPMA 3DLPX 4R1MA 4D4GA 2KZ0A 4LE5A 1PU1A 3IEVA 2V7BA 3CQ2A 4KTVA 2Y4OA 1HNWC 5IWAC 4PZPA 3CJEA 4DG8A 1ZB9A 4DV7C 2YCBA 5BUQA 2UXBC 2JNVA 2OPLB 4JYAC 2E8EA 3N54B 2ZZMA 2DYJA 2WP0C 4LF8C 1P7LA 4K0KC 3G7SA 4RVOA 3TR3A 4FTFA 3AF6A 5GTDA 4LF6C 1N34C 3LNOA 4L7IA 3K6RA 3A9UA 4JI2C 2PROA 5H9UA 4RMNA 1HH2P 4G36A 5KEIA 2OO4A 2BJOA 4DR7C 4I9FA 4LFBC 4DR4C 4DV1C 2DPLA 2XR1A 1JOSA 2UUBC 5LMNC 2EGTA 4IZ6A 2E8FA 5ADZA 2QW0X 1ULTA 5FLXD 4JI6C 2P20A 2KDNA 2D27A 3PROC 3GR1A 3FCCA 1V60A 4AQYC 1ZB8A 4DCUA 2ASBA 4D4IA 4DUYC 1L2FA 5DV9A 3A4IA 4BC9A 4GXQA 3CW8X 1MDFA 5IFIA 2UXDC 5K8FA 3I07A 1IB8A 5AE1A 1XMQC 1XNRC 5A1GA 1M6XA 4X65C 1VLAA 4RM3A 4LFAC 3GKUA 4RLQA 1P4EC 1PG4A 5BUSA 3L95X 4JI5C 2KZFA 4JI1C 1QWIA 4NOZA 2AYAA 3TDEA 3LGXA 3IEUA 4D56A 5BSTA 3T1HC 5T8TA 1T5HX 2MMAB 4DR5C 4NXNC 4ZLPA 5BSVA 2E0GA 1MKYA 4DCVA 3B7WA 3NPDA 2VQFC 4MTNA 2P2QA 1HNZC 4LFCC 4NDNA 1FLOA 3T1YC 2D7VA 2BH1X 3DHVA 4K0BA 4ODJA 2UXCC 1XRBA 2M5HA 1HR0C 1V26A 5LCIA 4DCTA 2VZEA 4BCAA 3UOWA 4PUGA 1J5EC 4XX2A 5AE3A 3R9XA 3E7XA 4MH4A 3N2QA 1RG9A 5CZVA 1O93A 2ONFA 5A1IA 2QVYX 1N33C 3FCEA 1VEHA 3VNRA 4KTTA 3A9VA 3ETOA 4U5YD 1WCJA 4X62C 2D1SA 3A25A 5A19A 3R9WA 1UWDA 3IPLA 2D28C 2ZM6C 3E7WA 3EERA 4YY3C 1LCIA 4OX9C 1XRCA 4D57A 1XRAA 1MD9A 1WF3A 2D1QA 3C5EA 3O2EA 4G1IA 4LF9C 2DHMA 1WH9A 5BSMA 4ZJZA 1T5DX 1XS3A 2PN2A 2OBVA 4DR3C 1USPA 1MXAA 4L2ZA 3A26A 4NXMC 3JAMD 3AF5A 4DV3C 1I94C 1LQLA 2E7GA 4RM2A 1QM4A 4DG9A 1PA4A 3J81D 3VNQA 2D1RA 4JI8C 4RVNA 5BSWA 4FUTA 4RLFA 4JI3C 2F4VC 1AMUA 4PROC 4LF7C 3ETCA 1USPB 3LUSA 5E7QA 3J80D 1NY8A 4LF4C 4DR1C 2OPLA 1NYEA 3TUFA 1BA3A 3EQ6A 2HHHC 4DV2C 3SO4A 1TH5A 4WS9A 4OYCA 1XMOC 4B3MC 1M6XC 1IBLC 1XHJA 2YWCA 2CXCA 4PUHA 4B3TC 2D1TA 4DUZC 5JRHA 4BC7A 1KKGA 4PUIA 5AE2A 2VSQA 4X64C 2P2JA 1O90A 3CQ3A 2P2MA 5BSUA 1IBKC 2CY1A 1FUGA 1K0RA 3GPCA 3H2TA 3PBKA 5KYVA 2MCQA 2UUAC 2Y27A 3UEBA 5IT9D 4HPVA 5LMUC 1MXBA 4GS5A 4YHHC 1RY2A 5BR8C 2VQEC 2NCLA 1N32C 4GKKC 4GXRA 5CZXA 1MXCA 4B3SC 4JV5C 5K85A 4KHPC 3CQ1A 2E5LC 3GR0A 4LF5C 3I08A 2UUCC 2YX1A 4TPSB 1N36C 4WV3A 3PESA 2P02A 2QVXX 3NYRA 1EGAA 4BBYA 2YWBA 3R44A 3RG2A 5KYTA 3VNSA 4I9GA 3UX3A 2Z51A 4R0MA 5A2QD 3CW9A 3NI2A 4JI7C 4DV4C 4GKJC 2QL8A 4JI0C 1YJ7A 2UU9C 4PHTA 5BURA 5T8SA 2JMPA 2P2FA 1O9TA 4B3RC 4FUQA 3DAYA 3KXWA 4G37A 1N2FA 1MDBA 2MM9A 1XNQC 3OTOC 4DCSA 1V25A 3AY0A 3TQIA 3RV2A 1HNXC 2CU6A 4X66C 4L4QA 2ATWA 1P4EA 3LAXA 3NYQA 2ZZNA 3L8CA 2P2BA 4DV6C 2M5OA 4ISBA 4OXIA 4DV0C 1IBMC 4BSZA 1O92A 2PT7G 4EATA 3UX2A 4IR7A 4DV5C 1UKKA 2QVZX 1FJGC 4DR6C 5BSRA 4DR2C 3IMLA 2HJGA 4JM1A 1ML8A 4R1LA 2Y4NA 3UZ0A 4JI4C 2E8CA
chains in the Genus database with same CATH topology
4PUIA 4PUGA 4PUHA 2NCLA 5LCIA 1NY8A 2MCQA 3TR3A 2KDNA 2MMAB 2MM9A 1XS3A 2KZ0A 3O2EA 1V60A 2DHMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PUI A;  4PUG A;  4PUH A;  2NCL A;  5LCI A;  1NY8 A;  2MCQ A;  3TR3 A;  2KDN A;  2MMA B;  2MM9 A;  1XS3 A;  2KZ0 A;  3O2E A;  1V60 A;  2DHM A; 
#chains in the Genus database with same CATH topology
 3LNV A;  1PG3 A;  2WD9 A;  3S82 A;  1GPM A;  3DLP X;  4R1M A;  4D4G A;  2KZ0 A;  4LE5 A;  1PU1 A;  3IEV A;  2V7B A;  3CQ2 A;  4KTV A;  2Y4O A;  1HNW C;  5IWA C;  4PZP A;  3CJE A;  4DG8 A;  1ZB9 A;  4DV7 C;  2YCB A;  5BUQ A;  2UXB C;  2JNV A;  2OPL B;  4JYA C;  2E8E A;  3N54 B;  2ZZM A;  2DYJ A;  2WP0 C;  4LF8 C;  1P7L A;  4K0K C;  3G7S A;  4RVO A;  3TR3 A;  4FTF A;  3AF6 A;  5GTD A;  4LF6 C;  1N34 C;  3LNO A;  4L7I A;  3K6R A;  3A9U A;  4JI2 C;  2PRO A;  5H9U A;  4RMN A;  1HH2 P;  4G36 A;  5KEI A;  2OO4 A;  2BJO A;  4DR7 C;  4I9F A;  4LFB C;  4DR4 C;  4DV1 C;  2DPL A;  2XR1 A;  1JOS A;  2UUB C;  5LMN C;  2EGT A;  4IZ6 A;  2E8F A;  5ADZ A;  2QW0 X;  1ULT A;  5FLX D;  4JI6 C;  2P20 A;  2KDN A;  2D27 A;  3PRO C;  3GR1 A;  3FCC A;  1V60 A;  4AQY C;  1ZB8 A;  4DCU A;  2ASB A;  4D4I A;  4DUY C;  1L2F A;  5DV9 A;  3A4I A;  4BC9 A;  4GXQ A;  3CW8 X;  1MDF A;  5IFI A;  2UXD C;  5K8F A;  3I07 A;  1IB8 A;  5AE1 A;  1XMQ C;  1XNR C;  5A1G A;  1M6X A;  4X65 C;  1VLA A;  4RM3 A;  4LFA C;  3GKU A;  4RLQ A;  1P4E C;  1PG4 A;  5BUS A;  3L95 X;  4JI5 C;  2KZF A;  4JI1 C;  1QWI A;  4NOZ A;  2AYA A;  3TDE A;  3LGX A;  3IEU A;  4D56 A;  5BST A;  3T1H C;  5T8T A;  1T5H X;  2MMA B;  4DR5 C;  4NXN C;  4ZLP A;  5BSV A;  2E0G A;  1MKY A;  4DCV A;  3B7W A;  3NPD A;  2VQF C;  4MTN A;  2P2Q A;  1HNZ C;  4LFC C;  4NDN A;  1FLO A;  3T1Y C;  2D7V A;  2BH1 X;  3DHV A;  4K0B A;  4ODJ A;  2UXC C;  1XRB A;  2M5H A;  1HR0 C;  1V26 A;  5LCI A;  4DCT A;  2VZE A;  4BCA A;  3UOW A;  4PUG A;  1J5E C;  4XX2 A;  5AE3 A;  3R9X A;  3E7X A;  4MH4 A;  3N2Q A;  1RG9 A;  5CZV A;  1O93 A;  2ONF A;  5A1I A;  2QVY X;  1N33 C;  3FCE A;  1VEH A;  3VNR A;  4KTT A;  3A9V A;  3ETO A;  4U5Y D;  1WCJ A;  4X62 C;  2D1S A;  3A25 A;  5A19 A;  3R9W A;  1UWD A;  3IPL A;  2D28 C;  2ZM6 C;  3E7W A;  3EER A;  4YY3 C;  1LCI A;  4OX9 C;  1XRC A;  4D57 A;  1XRA A;  1MD9 A;  1WF3 A;  2D1Q A;  3C5E A;  3O2E A;  4G1I A;  4LF9 C;  2DHM A;  1WH9 A;  5BSM A;  4ZJZ A;  1T5D X;  1XS3 A;  2PN2 A;  2OBV A;  4DR3 C;  1USP A;  1MXA A;  4L2Z A;  3A26 A;  4NXM C;  3JAM D;  3AF5 A;  4DV3 C;  1I94 C;  1LQL A;  2E7G A;  4RM2 A;  1QM4 A;  4DG9 A;  1PA4 A;  3J81 D;  3VNQ A;  2D1R A;  4JI8 C;  4RVN A;  5BSW A;  4FUT A;  4RLF A;  4JI3 C;  2F4V C;  1AMU A;  4PRO C;  4LF7 C;  3ETC A;  1USP B;  3LUS A;  5E7Q A;  3J80 D;  1NY8 A;  4LF4 C;  4DR1 C;  2OPL A;  1NYE A;  3TUF A;  1BA3 A;  3EQ6 A;  2HHH C;  4DV2 C;  3SO4 A;  1TH5 A;  4WS9 A;  4OYC A;  1XMO C;  4B3M C;  1M6X C;  1IBL C;  1XHJ A;  2YWC A;  2CXC A;  4PUH A;  4B3T C;  2D1T A;  4DUZ C;  5JRH A;  4BC7 A;  1KKG A;  4PUI A;  5AE2 A;  2VSQ A;  4X64 C;  2P2J A;  1O90 A;  3CQ3 A;  2P2M A;  5BSU A;  1IBK C;  2CY1 A;  1FUG A;  1K0R A;  3GPC A;  3H2T A;  3PBK A;  5KYV A;  2MCQ A;  2UUA C;  2Y27 A;  3UEB A;  5IT9 D;  4HPV A;  5LMU C;  1MXB A;  4GS5 A;  4YHH C;  1RY2 A;  5BR8 C;  2VQE C;  2NCL A;  1N32 C;  4GKK C;  4GXR A;  5CZX A;  1MXC A;  4B3S C;  4JV5 C;  5K85 A;  4KHP C;  3CQ1 A;  2E5L C;  3GR0 A;  4LF5 C;  3I08 A;  2UUC C;  2YX1 A;  4TPS B;  1N36 C;  4WV3 A;  3PES A;  2P02 A;  2QVX X;  3NYR A;  1EGA A;  4BBY A;  2YWB A;  3R44 A;  3RG2 A;  5KYT A;  3VNS A;  4I9G A;  3UX3 A;  2Z51 A;  4R0M A;  5A2Q D;  3CW9 A;  3NI2 A;  4JI7 C;  4DV4 C;  4GKJ C;  2QL8 A;  4JI0 C;  1YJ7 A;  2UU9 C;  4PHT A;  5BUR A;  5T8S A;  2JMP A;  2P2F A;  1O9T A;  4B3R C;  4FUQ A;  3DAY A;  3KXW A;  4G37 A;  1N2F A;  1MDB A;  2MM9 A;  1XNQ C;  3OTO C;  4DCS A;  1V25 A;  3AY0 A;  3TQI A;  3RV2 A;  1HNX C;  2CU6 A;  4X66 C;  4L4Q A;  2ATW A;  1P4E A;  3LAX A;  3NYQ A;  2ZZN A;  3L8C A;  2P2B A;  4DV6 C;  2M5O A;  4ISB A;  4OXI A;  4DV0 C;  1IBM C;  4BSZ A;  1O92 A;  2PT7 G;  4EAT A;  3UX2 A;  4IR7 A;  4DV5 C;  1UKK A;  2QVZ X;  1FJG C;  4DR6 C;  5BSR A;  4DR2 C;  3IML A;  2HJG A;  4JM1 A;  1ML8 A;  4R1L A;  2Y4N A;  3UZ0 A;  4JI4 C;  2E8C A; 
#chains in the Genus database with same CATH homology
 4PUI A;  4PUG A;  4PUH A;  2NCL A;  5LCI A;  1NY8 A;  2MCQ A;  3TR3 A;  2KDN A;  2MMA B;  2MM9 A;  1XS3 A;  2KZ0 A;  3O2E A;  1V60 A;  2DHM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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