1XZPB

Structure of the gtp-binding protein trme from thermotoga maritima
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
131
structure length
131
Chain Sequence
HWGSPNSSSVDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Probable tRNA modification GTPase trmE
publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
total genus 34
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzpB00
3TFJA 1WOOA 3GSIA 1WSRA 2GAHC 3AD9C 3GEHA 3GEIA 3TFIA 1PJ6A 3GIRA 4P9SA 1VRQC 3AD8C 1V5VA 3TFHA 1XZQB 5L46A 2GAGC 1WOSA 1YX2A 1WORA 1XZQA 3ADAC 1VLOA 1PJ5A 3A8KA 3AD7C 1WOPA 3A8IA 3GEEA 1X31C 1WSVA 1XZPB 1PJ7A 4PAAA 3TTGA 1XZPA 3A8JA 4PABA
chains in the Genus database with same CATH superfamily
3PO2C 4P5AA 4A93K 1F7UA 3SZYA 1XPPA 4A3FC 3N0BA 2WB1L 4YG2A 1F9NA 1K83K 3HOWK 3I4NK 3PO3K 3T01A 3MMLB 2NVYC 3GTMC 3FKIK 3FKIA 4KASA 1Y1WC 2B63C 3GTJC 3RZDK 3S1MC 3M3YC 4C3HK 4G0VA 1YNJA 1J6XA 1BDFA 3VA7A 3S16K 1VJEA 4MEXA 3HOYC 3GEIA 4OINA 1USOA 2Y3PA 4Y52C 1ZXOA 4BKWA 3ERED 1I3QK 1J6WA 3AD8C 2E2IK 1WQFA 3OREA 4A93C 2E2IA 2ZFZA 3ADAC 3IPJA 3V4GA 2WAQD 3A8IA 4OIRA 2NVTK 4A3IC 2PPBA 1R9TK 1R9TA 3H3VD 1K83C 3HOWC 2RH6A 3PO3C 2XCOA 3N3YA 3TFJA 2A68A 3FKIC 3RZDC 3N0CA 4C3HC 1ZQ1C 4G0UA 4J3NA 4LQYA 3S2DK 3GTLK 3S16C 4KB2A 4XLNA 1DCOA 2JA7A 1I3QC 4XSXA 1XZPA 3S0XA 2E2IC 4ZH4A 5C4XK 3RZOK 4BBRK 2R93K 1HI9A 2NVTC 4GZYA 3TFIA 4QJVB 1R9TC 4FM9A 2E2JK 4C3JC 1B4BA 1VRQC 5M5YK 2ZUFA 1O25A 4O2DA 3TFHA 5IP9K 3L4JA 4OIPA 3G4CA 3GTPK 4DDQA 2PHCB 4A3KK 4XSZA 3CAGA 5IYCK 3H0GK 3H0GA 2NVQK 4FZBA 4A3LK 4KMAA 3NUHA 5CJ9A 3LPXA 3GTLC 3S2DC 1YCLA 3GTMA 5EGHA 1VGXA 3GTJA 5IOQA 4G0WA 5C44K 4Y7NK 1DD5A 4C45A 1WORA 2WAQL 4BY1K 3RZOC 5C4XC 4BBRC 4P5BA 5M5XK 2W7VA 2E2JC 5E68A 1IQ0A 2A6EA 3H3VL 1TWAK 4M1XA 3CQZK 5IP9C 1EK8A 4PABA 3GTKK 3GTPC 4LOWA 3S1RK 3OPFA 4A3KC 3K7AK 2R7ZK 4GTFA 3H0GC 4A3CK 3HKZD 2NVQC 2VUMK 5IP7K 1VH2A 4A3LC 3LAJA 1K83A 3LAPA 5IYDK 5IOTA 1O24A 1XZPB 4Y7NC 4G7HA 4OIOA 2EBBA 1JOEA 2CW0A 4BY1C 2D6FC 1TWGK 4KARA 1O28A 4KB4A 3HOZK 1TWAC 4GTEA 1G51A 3CQZC 4QIWD 4GT9A 1B4AA 1I3QA 4A3MC 2GAGC 3GTKC 2A69A 1EFWA 1YX2A 1XZQA 1WQGA 5IOSA 4WJ4A 1EQRA 3K7AC 5C3EK 4A3CC 2VUMC 5IP7C 3Q3QA 4PAAA 3TTGA 4AYBD 3I4NC 5IYDC 1WOOA 3BP3A 4KM9A 1XXBA 5M3FK 1TWGC 2R92K 2O5JA 2R92A 3GTLA 1XXAA 3A8KA 3HOZC 3GEEA 4AH6A 2NVXK 5IORA 5M3MK 1WIHA 4KMUA 1SMYA 1WCMK 1SFOK 2GSOA 4LK0A 3T02A 4BLAA 3SZZA 1KQ4A 1DCHA 4YFKA 5C3EC 2R93A 1IL2A 4RMFA 1PJ6A 3HKZL 3AQPA 1BGWA 3GTOK 3S15K 3HOXK 1WOSA 4NOIA 4BLBA 2P5MA 3OEPA 3GTPA 1WOPA 1IS1A 5HL8A 4C3IK 4GTBA 4JK1A 4WILA 1RU0A 3A8JA 1IW7A 3M4OK 2R92C 3BP8C 4KMHA 1I6VA 1O2AA 2GSNA 1TWHK 2NVXC 4ILDA 2RGRA 1BS2A 2FQTA 3GIRA 4QIWL 2PA8D 5CHPA 1TWCK 1WCMC 5JVOA 1XZQB 5C4JK 3PO2K 3FHZA 2R93C 4A3FK 2P8TA 3DXJA 3GTOC 3HOXC 4AYBL 1TWAA 1YNNA 3CQZA 1O2FB 4GTAA 4KMDA 3GTKA 1XXCA 2ZUEA 2YU9K 2YU9A 1DCPA 1Y1WK 2B63K 4C2MK 4C3IC 2R7ZA 5IYCC 4A3BK 3HOVK 2JH3A 2KWAA 4Q5SA 2VUMA 3FOEA 5L46A 3M4OC 1Y1VK 1PJ5A 1TWHC 1I50K 1I50A 1ZVUA 5FJ8K 3GTGK 5C44C 4A3GK 2A6HA 5C4JC 1EH1A 2JA8K 2BE5A 1O29A 4GTLA 3GSIA 1TWGA 4A3IK 1O27A 3HXAA 4XLPA 4G7OA 4QJVA 4P9SA 3T00A 2O5IA 4GTCA 1C0AA 2CFAA 4KATA 2V6TA 4BBSK 3HOUK 3AH5A 2JA5K 4YFNA 5FLMK 3S1RC 2Y0SD 1INNA 3G4AA 4YFXA 2YU9C 2JA5A 1X31C 4GFQA 1ZYRA 4C2MC 2R7ZC 1JQWA 4A3BC 4KN4A 3HOVC 1PJ7A 4KC6A 4KAWX 1TWFK 4LJZA 1TWFA 4BXXK 1Y1VC 1I50C 2PMZD 1WSRA 4A3EK 2PA8L 1IE0A 3GTGC 4A3GC 1GE9A 4A3JK 2JA8C 3S1NK 2FQOA 4OIQA 4A3DK 3GDZA 4KDDA 1I6HK 4X6AK 4G7ZA 3AD7C 3QX3A 4MEYA 2NVXA 1IBAA 4C3JK 4BBSC 3HOUC 4Q4ZA 1WCMA 1SFOA 2JA5C 5FLMC 2V6SA 3AD9C 3GEHA 1BJTA 3S1QK 1F7VA 5JFEA 3GTOA 2WB1D 1TWFC 3S2HK 5IYBK 4BXXC 4KN7A 1JVIA 1HQMA 2V6UA 3S14K 4BY7K 4A3EC 3L4KA 2JA7K 1WSVA 4GTDA 1J6VA 3AQOA 4A3JC 2JA6K 3S1NC 2JA6A 2E2HK 2E2HA 1UV7A 1USMA 4A3DC 5M5WK 3EQLA 1I6HC 3GTQK 3BUEA 3GTQA 4X6AC 3S17K 1WQHA 2GAHC 3I4MK 1TWHA 2CFAB 2GSUA 3JSTA 1J98A 2XCRB 1V5VA 1TWCA 1SFOC 1VLOA 4WJ3M 2Y0SL 3WODA 1F93A 1ISEA 3S1QC 1ZBSA 3S15C 1O2BA 3S2HC 1EI6A 5IYBC 4LK1A 4XCHA 2PMZL 1O26A 4KM8A 3S14C 2NVYK 2NVYA 3GTMK 4BY7C 1AB4A 2XCQA 2JA7C 1Y1WA 3GTJK 2B63A 4LLGA 5TMCA 3M3YK 2JA6C 3S1MK 2E2HC 4LR2A 5D4DA 4MQ9A 3GTQC 3S17C 1Y1VA 5TMFA 5TJ3A 3I4MC 3HOYK 3FOFA 4Y52K 1L0WA 4A3MK 5EGEA 3GTGA 1TWCC
chains in the Genus database with same CATH topology
3TFJA 1WOOA 3GSIA 1WSRA 2GAHC 3AD9C 3GEHA 3GEIA 3TFIA 1PJ6A 3GIRA 4P9SA 1VRQC 3AD8C 1V5VA 3TFHA 1XZQB 5L46A 2GAGC 1WOSA 1YX2A 1WORA 1XZQA 3ADAC 1VLOA 1PJ5A 3A8KA 3AD7C 1WOPA 3A8IA 3GEEA 1X31C 1WSVA 1XZPB 1PJ7A 4PAAA 3TTGA 1XZPA 3A8JA 4PABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TFJ A;  1WOO A;  3GSI A;  1WSR A;  2GAH C;  3AD9 C;  3GEH A;  3GEI A;  3TFI A;  1PJ6 A;  3GIR A;  4P9S A;  1VRQ C;  3AD8 C;  1V5V A;  3TFH A;  1XZQ B;  5L46 A;  2GAG C;  1WOS A;  1YX2 A;  1WOR A;  1XZQ A;  3ADA C;  1VLO A;  1PJ5 A;  3A8K A;  3AD7 C;  1WOP A;  3A8I A;  3GEE A;  1X31 C;  1WSV A;  1XZP B;  1PJ7 A;  4PAA A;  3TTG A;  1XZP A;  3A8J A;  4PAB A; 
#chains in the Genus database with same CATH topology
 3PO2 C;  4P5A A;  4A93 K;  1F7U A;  3SZY A;  1XPP A;  4A3F C;  3N0B A;  2WB1 L;  4YG2 A;  1F9N A;  1K83 K;  3HOW K;  3I4N K;  3PO3 K;  3T01 A;  3MML B;  2NVY C;  3GTM C;  3FKI K;  3FKI A;  4KAS A;  1Y1W C;  2B63 C;  3GTJ C;  3RZD K;  3S1M C;  3M3Y C;  4C3H K;  4G0V A;  1YNJ A;  1J6X A;  1BDF A;  3VA7 A;  3S16 K;  1VJE A;  4MEX A;  3HOY C;  3GEI A;  4OIN A;  1USO A;  2Y3P A;  4Y52 C;  1ZXO A;  4BKW A;  3ERE D;  1I3Q K;  1J6W A;  3AD8 C;  2E2I K;  1WQF A;  3ORE A;  4A93 C;  2E2I A;  2ZFZ A;  3ADA C;  3IPJ A;  3V4G A;  2WAQ D;  3A8I A;  4OIR A;  2NVT K;  4A3I C;  2PPB A;  1R9T K;  1R9T A;  3H3V D;  1K83 C;  3HOW C;  2RH6 A;  3PO3 C;  2XCO A;  3N3Y A;  3TFJ A;  2A68 A;  3FKI C;  3RZD C;  3N0C A;  4C3H C;  1ZQ1 C;  4G0U A;  4J3N A;  4LQY A;  3S2D K;  3GTL K;  3S16 C;  4KB2 A;  4XLN A;  1DCO A;  2JA7 A;  1I3Q C;  4XSX A;  1XZP A;  3S0X A;  2E2I C;  4ZH4 A;  5C4X K;  3RZO K;  4BBR K;  2R93 K;  1HI9 A;  2NVT C;  4GZY A;  3TFI A;  4QJV B;  1R9T C;  4FM9 A;  2E2J K;  4C3J C;  1B4B A;  1VRQ C;  5M5Y K;  2ZUF A;  1O25 A;  4O2D A;  3TFH A;  5IP9 K;  3L4J A;  4OIP A;  3G4C A;  3GTP K;  4DDQ A;  2PHC B;  4A3K K;  4XSZ A;  3CAG A;  5IYC K;  3H0G K;  3H0G A;  2NVQ K;  4FZB A;  4A3L K;  4KMA A;  3NUH A;  5CJ9 A;  3LPX A;  3GTL C;  3S2D C;  1YCL A;  3GTM A;  5EGH A;  1VGX A;  3GTJ A;  5IOQ A;  4G0W A;  5C44 K;  4Y7N K;  1DD5 A;  4C45 A;  1WOR A;  2WAQ L;  4BY1 K;  3RZO C;  5C4X C;  4BBR C;  4P5B A;  5M5X K;  2W7V A;  2E2J C;  5E68 A;  1IQ0 A;  2A6E A;  3H3V L;  1TWA K;  4M1X A;  3CQZ K;  5IP9 C;  1EK8 A;  4PAB A;  3GTK K;  3GTP C;  4LOW A;  3S1R K;  3OPF A;  4A3K C;  3K7A K;  2R7Z K;  4GTF A;  3H0G C;  4A3C K;  3HKZ D;  2NVQ C;  2VUM K;  5IP7 K;  1VH2 A;  4A3L C;  3LAJ A;  1K83 A;  3LAP A;  5IYD K;  5IOT A;  1O24 A;  1XZP B;  4Y7N C;  4G7H A;  4OIO A;  2EBB A;  1JOE A;  2CW0 A;  4BY1 C;  2D6F C;  1TWG K;  4KAR A;  1O28 A;  4KB4 A;  3HOZ K;  1TWA C;  4GTE A;  1G51 A;  3CQZ C;  4QIW D;  4GT9 A;  1B4A A;  1I3Q A;  4A3M C;  2GAG C;  3GTK C;  2A69 A;  1EFW A;  1YX2 A;  1XZQ A;  1WQG A;  5IOS A;  4WJ4 A;  1EQR A;  3K7A C;  5C3E K;  4A3C C;  2VUM C;  5IP7 C;  3Q3Q A;  4PAA A;  3TTG A;  4AYB D;  3I4N C;  5IYD C;  1WOO A;  3BP3 A;  4KM9 A;  1XXB A;  5M3F K;  1TWG C;  2R92 K;  2O5J A;  2R92 A;  3GTL A;  1XXA A;  3A8K A;  3HOZ C;  3GEE A;  4AH6 A;  2NVX K;  5IOR A;  5M3M K;  1WIH A;  4KMU A;  1SMY A;  1WCM K;  1SFO K;  2GSO A;  4LK0 A;  3T02 A;  4BLA A;  3SZZ A;  1KQ4 A;  1DCH A;  4YFK A;  5C3E C;  2R93 A;  1IL2 A;  4RMF A;  1PJ6 A;  3HKZ L;  3AQP A;  1BGW A;  3GTO K;  3S15 K;  3HOX K;  1WOS A;  4NOI A;  4BLB A;  2P5M A;  3OEP A;  3GTP A;  1WOP A;  1IS1 A;  5HL8 A;  4C3I K;  4GTB A;  4JK1 A;  4WIL A;  1RU0 A;  3A8J A;  1IW7 A;  3M4O K;  2R92 C;  3BP8 C;  4KMH A;  1I6V A;  1O2A A;  2GSN A;  1TWH K;  2NVX C;  4ILD A;  2RGR A;  1BS2 A;  2FQT A;  3GIR A;  4QIW L;  2PA8 D;  5CHP A;  1TWC K;  1WCM C;  5JVO A;  1XZQ B;  5C4J K;  3PO2 K;  3FHZ A;  2R93 C;  4A3F K;  2P8T A;  3DXJ A;  3GTO C;  3HOX C;  4AYB L;  1TWA A;  1YNN A;  3CQZ A;  1O2F B;  4GTA A;  4KMD A;  3GTK A;  1XXC A;  2ZUE A;  2YU9 K;  2YU9 A;  1DCP A;  1Y1W K;  2B63 K;  4C2M K;  4C3I C;  2R7Z A;  5IYC C;  4A3B K;  3HOV K;  2JH3 A;  2KWA A;  4Q5S A;  2VUM A;  3FOE A;  5L46 A;  3M4O C;  1Y1V K;  1PJ5 A;  1TWH C;  1I50 K;  1I50 A;  1ZVU A;  5FJ8 K;  3GTG K;  5C44 C;  4A3G K;  2A6H A;  5C4J C;  1EH1 A;  2JA8 K;  2BE5 A;  1O29 A;  4GTL A;  3GSI A;  1TWG A;  4A3I K;  1O27 A;  3HXA A;  4XLP A;  4G7O A;  4QJV A;  4P9S A;  3T00 A;  2O5I A;  4GTC A;  1C0A A;  2CFA A;  4KAT A;  2V6T A;  4BBS K;  3HOU K;  3AH5 A;  2JA5 K;  4YFN A;  5FLM K;  3S1R C;  2Y0S D;  1INN A;  3G4A A;  4YFX A;  2YU9 C;  2JA5 A;  1X31 C;  4GFQ A;  1ZYR A;  4C2M C;  2R7Z C;  1JQW A;  4A3B C;  4KN4 A;  3HOV C;  1PJ7 A;  4KC6 A;  4KAW X;  1TWF K;  4LJZ A;  1TWF A;  4BXX K;  1Y1V C;  1I50 C;  2PMZ D;  1WSR A;  4A3E K;  2PA8 L;  1IE0 A;  3GTG C;  4A3G C;  1GE9 A;  4A3J K;  2JA8 C;  3S1N K;  2FQO A;  4OIQ A;  4A3D K;  3GDZ A;  4KDD A;  1I6H K;  4X6A K;  4G7Z A;  3AD7 C;  3QX3 A;  4MEY A;  2NVX A;  1IBA A;  4C3J K;  4BBS C;  3HOU C;  4Q4Z A;  1WCM A;  1SFO A;  2JA5 C;  5FLM C;  2V6S A;  3AD9 C;  3GEH A;  1BJT A;  3S1Q K;  1F7V A;  5JFE A;  3GTO A;  2WB1 D;  1TWF C;  3S2H K;  5IYB K;  4BXX C;  4KN7 A;  1JVI A;  1HQM A;  2V6U A;  3S14 K;  4BY7 K;  4A3E C;  3L4K A;  2JA7 K;  1WSV A;  4GTD A;  1J6V A;  3AQO A;  4A3J C;  2JA6 K;  3S1N C;  2JA6 A;  2E2H K;  2E2H A;  1UV7 A;  1USM A;  4A3D C;  5M5W K;  3EQL A;  1I6H C;  3GTQ K;  3BUE A;  3GTQ A;  4X6A C;  3S17 K;  1WQH A;  2GAH C;  3I4M K;  1TWH A;  2CFA B;  2GSU A;  3JST A;  1J98 A;  2XCR B;  1V5V A;  1TWC A;  1SFO C;  1VLO A;  4WJ3 M;  2Y0S L;  3WOD A;  1F93 A;  1ISE A;  3S1Q C;  1ZBS A;  3S15 C;  1O2B A;  3S2H C;  1EI6 A;  5IYB C;  4LK1 A;  4XCH A;  2PMZ L;  1O26 A;  4KM8 A;  3S14 C;  2NVY K;  2NVY A;  3GTM K;  4BY7 C;  1AB4 A;  2XCQ A;  2JA7 C;  1Y1W A;  3GTJ K;  2B63 A;  4LLG A;  5TMC A;  3M3Y K;  2JA6 C;  3S1M K;  2E2H C;  4LR2 A;  5D4D A;  4MQ9 A;  3GTQ C;  3S17 C;  1Y1V A;  5TMF A;  5TJ3 A;  3I4M C;  3HOY K;  3FOF A;  4Y52 K;  1L0W A;  4A3M K;  5EGE A;  3GTG A;  1TWC C; 
#chains in the Genus database with same CATH homology
 3TFJ A;  1WOO A;  3GSI A;  1WSR A;  2GAH C;  3AD9 C;  3GEH A;  3GEI A;  3TFI A;  1PJ6 A;  3GIR A;  4P9S A;  1VRQ C;  3AD8 C;  1V5V A;  3TFH A;  1XZQ B;  5L46 A;  2GAG C;  1WOS A;  1YX2 A;  1WOR A;  1XZQ A;  3ADA C;  1VLO A;  1PJ5 A;  3A8K A;  3AD7 C;  1WOP A;  3A8I A;  3GEE A;  1X31 C;  1WSV A;  1XZP B;  1PJ7 A;  4PAA A;  3TTG A;  1XZP A;  3A8J A;  4PAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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