1Y6VA

Structure of e. coli alkaline phosphatase in presence of cobalt at 1.60 a resolution
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title Metal Specificity Is Correlated with Two Crucial Active Site Residues in Escherichia coli Alkaline Phosphatase(,).
pubmed doi rcsb
source organism Escherichia coli
total genus 163
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2004-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1y6vA00
1E1ZP 2XR9A 2G9YA 4UPIA 4NWJA 1B8JA 5LIAA 4LRBA 5DLTA 3A52A 4LRDA 5EGEA 3CMRA 5DLVA 1AJBA 1P49A 4UOOA 5GOVA 3SZZA 5AJ9A 2D1GA 3IDDA 2W5WA 3MK2A 1EW9A 1HDHA 1EJJA 1URAA 1ANIA 2RH6A 1ED8A 3TX0A 5LQQA 1ALHA 1KH4A 1EQJA 4CXUA 3OT9A 5INHA 2W5QA 2GA3A 3Q3QA 4UOPA 4GTZA 1ALIA 1ELYA 3UO0A 3NKPA 3WAYA 3NKQA 2ANHA 2W5RA 5EGHA 2W8SA 2GLQA 1KHNA 4GTYA 4MHXA 1AUKA 1KH7A 3BDFA 4N7TA 4UPKA 2QZUA 5IJSA 2W5TA 3T01A 4KAYA 3KD8A 4LR7A 1URBA 1KHKA 3TWZA 1EW8A 3DPCA 1ANJA 4LR9A 3WAWA 2W5VA 3BDGB 4KAVA 3WAXA 3M7VA 2W5XA 3NVLA 1KH9A 3NKMA 3B5QA 2IUCB 2GSUA 5L0KA 4UPLA 1ELXA 2ZKTA 3M8ZA 3SZYA 1ZEDA 4CYRA 1EW2A 3NKOA 1O98A 1KH5A 4MIVA 3DYCA 4LRFA 3T02A 2W8DA 4QAXA 3WAVA 4UORA 4ZG9A 4KM4A 3MK0A 1AJAA 4LR8A 1ELZA 1ZEFA 3TG0A 1O99A 1N2LA 4KJGA 4LQYA 2GSNA 4LRCA 1HQAA 1Y7AA 5DLWA 3UNYA 4ZG6A 2VQRA 2XRGA 4ZG7A 1AJCA 1KHLA 1E2SP 5GRRA 4LREA 3NKRA 4LR2A 3UN2A 3BDHA 3M8YA 1E33P 2IFYA 1EI6A 1ALKA 3BDGA 3IGZB 1ED9A 5LRMA 5LRNA 5HRTA 2IUCA 3T00A 4FDIA 4CYSA 5IJQA 5KXAA 1HJKA 3MK1A 3IGYB 5TJ3A 1SHNA 1ZEBA 4GTWA 4NWXA 3UN3A 2W5SA 3WBHA 1AJDA 3ED4A 4CXKA 1FSUA 3UN5A 5K4PA 3M8WA 1N2KA 4B56A 4MY4A 4UPHA 2GSOA 1K7HA 4FDJA 5L0BA 1ALJA 3NKNA 5L0EA 3LXQA 4LRAA 1KHJA 1SHQA 4KJDA 5C66A 4YR1A 4CXSA 2X98A 4ZGAA 4GTXA 4TN0A 1E3CP 1Y6VA 3E2DA
chains in the Genus database with same CATH superfamily
1E1ZP 2XR9A 2G9YA 4UPIA 4NWJA 1B8JA 5LIAA 4LRBA 5DLTA 3A52A 4LRDA 5EGEA 3CMRA 5DLVA 1AJBA 1P49A 4UOOA 5GOVA 3SZZA 5AJ9A 2D1GA 3IDDA 2W5WA 3MK2A 1EW9A 1HDHA 1EJJA 1URAA 1ANIA 2RH6A 1ED8A 3TX0A 5LQQA 1ALHA 1KH4A 1EQJA 4CXUA 3OT9A 5INHA 2W5QA 2GA3A 3Q3QA 4UOPA 4GTZA 1ALIA 1ELYA 3UO0A 3NKPA 3WAYA 3NKQA 2ANHA 2W5RA 5EGHA 2W8SA 2GLQA 1KHNA 4GTYA 4MHXA 1AUKA 1KH7A 3BDFA 4N7TA 4UPKA 2QZUA 5IJSA 2W5TA 3T01A 4KAYA 3KD8A 4LR7A 1URBA 1KHKA 3TWZA 1EW8A 3DPCA 1ANJA 4LR9A 3WAWA 2W5VA 3BDGB 4KAVA 3WAXA 3M7VA 2W5XA 3NVLA 1KH9A 3NKMA 3B5QA 2IUCB 2GSUA 5L0KA 4UPLA 1ELXA 2ZKTA 3M8ZA 3SZYA 1ZEDA 4CYRA 1EW2A 3NKOA 1O98A 1KH5A 4MIVA 3DYCA 4LRFA 3T02A 2W8DA 4QAXA 3WAVA 4UORA 4ZG9A 4KM4A 3MK0A 1AJAA 4LR8A 1ELZA 1ZEFA 3TG0A 1O99A 1N2LA 4KJGA 4LQYA 2GSNA 4LRCA 1HQAA 1Y7AA 5DLWA 3UNYA 4ZG6A 2VQRA 2XRGA 4ZG7A 1AJCA 1KHLA 1E2SP 5GRRA 4LREA 3NKRA 4LR2A 3UN2A 3BDHA 3M8YA 1E33P 2IFYA 1EI6A 1ALKA 3BDGA 3IGZB 1ED9A 5LRMA 5LRNA 5HRTA 2IUCA 3T00A 4FDIA 4CYSA 5IJQA 5KXAA 1HJKA 3MK1A 3IGYB 5TJ3A 1SHNA 1ZEBA 4GTWA 4NWXA 3UN3A 2W5SA 3WBHA 1AJDA 3ED4A 4CXKA 1FSUA 3UN5A 5K4PA 3M8WA 1N2KA 4B56A 4MY4A 4UPHA 2GSOA 1K7HA 4FDJA 5L0BA 1ALJA 3NKNA 5L0EA 3LXQA 4LRAA 1KHJA 1SHQA 4KJDA 5C66A 4YR1A 4CXSA 2X98A 4ZGAA 4GTXA 4TN0A 1E3CP 1Y6VA 3E2DA
chains in the Genus database with same CATH topology
1E1ZP 2XR9A 2G9YA 4UPIA 4NWJA 1B8JA 5LIAA 4LRBA 5DLTA 3A52A 4LRDA 5EGEA 3CMRA 5DLVA 1AJBA 1P49A 4UOOA 5GOVA 3SZZA 5AJ9A 2D1GA 3IDDA 2W5WA 3MK2A 1EW9A 1HDHA 1EJJA 1URAA 1ANIA 2RH6A 1ED8A 3TX0A 5LQQA 1ALHA 1KH4A 1EQJA 4CXUA 3OT9A 5INHA 2W5QA 2GA3A 3Q3QA 4UOPA 4GTZA 1ALIA 1ELYA 3UO0A 3NKPA 3WAYA 3NKQA 2ANHA 2W5RA 5EGHA 2W8SA 2GLQA 1KHNA 4GTYA 4MHXA 1AUKA 1KH7A 3BDFA 4N7TA 4UPKA 2QZUA 5IJSA 2W5TA 3T01A 4KAYA 3KD8A 4LR7A 1URBA 1KHKA 3TWZA 1EW8A 3DPCA 1ANJA 4LR9A 3WAWA 2W5VA 3BDGB 4KAVA 3WAXA 3M7VA 2W5XA 3NVLA 1KH9A 3NKMA 3B5QA 2IUCB 2GSUA 5L0KA 4UPLA 1ELXA 2ZKTA 3M8ZA 3SZYA 1ZEDA 4CYRA 1EW2A 3NKOA 1O98A 1KH5A 4MIVA 3DYCA 4LRFA 3T02A 2W8DA 4QAXA 3WAVA 4UORA 4ZG9A 4KM4A 3MK0A 1AJAA 4LR8A 1ELZA 1ZEFA 3TG0A 1O99A 1N2LA 4KJGA 4LQYA 2GSNA 4LRCA 1HQAA 1Y7AA 5DLWA 3UNYA 4ZG6A 2VQRA 2XRGA 4ZG7A 1AJCA 1KHLA 1E2SP 5GRRA 4LREA 3NKRA 4LR2A 3UN2A 3BDHA 3M8YA 1E33P 2IFYA 1EI6A 1ALKA 3BDGA 3IGZB 1ED9A 5LRMA 5LRNA 5HRTA 2IUCA 3T00A 4FDIA 4CYSA 5IJQA 5KXAA 1HJKA 3MK1A 3IGYB 5TJ3A 1SHNA 1ZEBA 4GTWA 4NWXA 3UN3A 2W5SA 3WBHA 1AJDA 3ED4A 4CXKA 1FSUA 3UN5A 5K4PA 3M8WA 1N2KA 4B56A 4MY4A 4UPHA 2GSOA 1K7HA 4FDJA 5L0BA 1ALJA 3NKNA 5L0EA 3LXQA 4LRAA 1KHJA 1SHQA 4KJDA 5C66A 4YR1A 4CXSA 2X98A 4ZGAA 4GTXA 4TN0A 1E3CP 1Y6VA 3E2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E1Z P;  2XR9 A;  2G9Y A;  4UPI A;  4NWJ A;  1B8J A;  5LIA A;  4LRB A;  5DLT A;  3A52 A;  4LRD A;  5EGE A;  3CMR A;  5DLV A;  1AJB A;  1P49 A;  4UOO A;  5GOV A;  3SZZ A;  5AJ9 A;  2D1G A;  3IDD A;  2W5W A;  3MK2 A;  1EW9 A;  1HDH A;  1EJJ A;  1URA A;  1ANI A;  2RH6 A;  1ED8 A;  3TX0 A;  5LQQ A;  1ALH A;  1KH4 A;  1EQJ A;  4CXU A;  3OT9 A;  5INH A;  2W5Q A;  2GA3 A;  3Q3Q A;  4UOP A;  4GTZ A;  1ALI A;  1ELY A;  3UO0 A;  3NKP A;  3WAY A;  3NKQ A;  2ANH A;  2W5R A;  5EGH A;  2W8S A;  2GLQ A;  1KHN A;  4GTY A;  4MHX A;  1AUK A;  1KH7 A;  3BDF A;  4N7T A;  4UPK A;  2QZU A;  5IJS A;  2W5T A;  3T01 A;  4KAY A;  3KD8 A;  4LR7 A;  1URB A;  1KHK A;  3TWZ A;  1EW8 A;  3DPC A;  1ANJ A;  4LR9 A;  3WAW A;  2W5V A;  3BDG B;  4KAV A;  3WAX A;  3M7V A;  2W5X A;  3NVL A;  1KH9 A;  3NKM A;  3B5Q A;  2IUC B;  2GSU A;  5L0K A;  4UPL A;  1ELX A;  2ZKT A;  3M8Z A;  3SZY A;  1ZED A;  4CYR A;  1EW2 A;  3NKO A;  1O98 A;  1KH5 A;  4MIV A;  3DYC A;  4LRF A;  3T02 A;  2W8D A;  4QAX A;  3WAV A;  4UOR A;  4ZG9 A;  4KM4 A;  3MK0 A;  1AJA A;  4LR8 A;  1ELZ A;  1ZEF A;  3TG0 A;  1O99 A;  1N2L A;  4KJG A;  4LQY A;  2GSN A;  4LRC A;  1HQA A;  1Y7A A;  5DLW A;  3UNY A;  4ZG6 A;  2VQR A;  2XRG A;  4ZG7 A;  1AJC A;  1KHL A;  1E2S P;  5GRR A;  4LRE A;  3NKR A;  4LR2 A;  3UN2 A;  3BDH A;  3M8Y A;  1E33 P;  2IFY A;  1EI6 A;  1ALK A;  3BDG A;  3IGZ B;  1ED9 A;  5LRM A;  5LRN A;  5HRT A;  2IUC A;  3T00 A;  4FDI A;  4CYS A;  5IJQ A;  5KXA A;  1HJK A;  3MK1 A;  3IGY B;  5TJ3 A;  1SHN A;  1ZEB A;  4GTW A;  4NWX A;  3UN3 A;  2W5S A;  3WBH A;  1AJD A;  3ED4 A;  4CXK A;  1FSU A;  3UN5 A;  5K4P A;  3M8W A;  1N2K A;  4B56 A;  4MY4 A;  4UPH A;  2GSO A;  1K7H A;  4FDJ A;  5L0B A;  1ALJ A;  3NKN A;  5L0E A;  3LXQ A;  4LRA A;  1KHJ A;  1SHQ A;  4KJD A;  5C66 A;  4YR1 A;  4CXS A;  2X98 A;  4ZGA A;  4GTX A;  4TN0 A;  1E3C P;  1Y6V A;  3E2D A; 
#chains in the Genus database with same CATH topology
 1E1Z P;  2XR9 A;  2G9Y A;  4UPI A;  4NWJ A;  1B8J A;  5LIA A;  4LRB A;  5DLT A;  3A52 A;  4LRD A;  5EGE A;  3CMR A;  5DLV A;  1AJB A;  1P49 A;  4UOO A;  5GOV A;  3SZZ A;  5AJ9 A;  2D1G A;  3IDD A;  2W5W A;  3MK2 A;  1EW9 A;  1HDH A;  1EJJ A;  1URA A;  1ANI A;  2RH6 A;  1ED8 A;  3TX0 A;  5LQQ A;  1ALH A;  1KH4 A;  1EQJ A;  4CXU A;  3OT9 A;  5INH A;  2W5Q A;  2GA3 A;  3Q3Q A;  4UOP A;  4GTZ A;  1ALI A;  1ELY A;  3UO0 A;  3NKP A;  3WAY A;  3NKQ A;  2ANH A;  2W5R A;  5EGH A;  2W8S A;  2GLQ A;  1KHN A;  4GTY A;  4MHX A;  1AUK A;  1KH7 A;  3BDF A;  4N7T A;  4UPK A;  2QZU A;  5IJS A;  2W5T A;  3T01 A;  4KAY A;  3KD8 A;  4LR7 A;  1URB A;  1KHK A;  3TWZ A;  1EW8 A;  3DPC A;  1ANJ A;  4LR9 A;  3WAW A;  2W5V A;  3BDG B;  4KAV A;  3WAX A;  3M7V A;  2W5X A;  3NVL A;  1KH9 A;  3NKM A;  3B5Q A;  2IUC B;  2GSU A;  5L0K A;  4UPL A;  1ELX A;  2ZKT A;  3M8Z A;  3SZY A;  1ZED A;  4CYR A;  1EW2 A;  3NKO A;  1O98 A;  1KH5 A;  4MIV A;  3DYC A;  4LRF A;  3T02 A;  2W8D A;  4QAX A;  3WAV A;  4UOR A;  4ZG9 A;  4KM4 A;  3MK0 A;  1AJA A;  4LR8 A;  1ELZ A;  1ZEF A;  3TG0 A;  1O99 A;  1N2L A;  4KJG A;  4LQY A;  2GSN A;  4LRC A;  1HQA A;  1Y7A A;  5DLW A;  3UNY A;  4ZG6 A;  2VQR A;  2XRG A;  4ZG7 A;  1AJC A;  1KHL A;  1E2S P;  5GRR A;  4LRE A;  3NKR A;  4LR2 A;  3UN2 A;  3BDH A;  3M8Y A;  1E33 P;  2IFY A;  1EI6 A;  1ALK A;  3BDG A;  3IGZ B;  1ED9 A;  5LRM A;  5LRN A;  5HRT A;  2IUC A;  3T00 A;  4FDI A;  4CYS A;  5IJQ A;  5KXA A;  1HJK A;  3MK1 A;  3IGY B;  5TJ3 A;  1SHN A;  1ZEB A;  4GTW A;  4NWX A;  3UN3 A;  2W5S A;  3WBH A;  1AJD A;  3ED4 A;  4CXK A;  1FSU A;  3UN5 A;  5K4P A;  3M8W A;  1N2K A;  4B56 A;  4MY4 A;  4UPH A;  2GSO A;  1K7H A;  4FDJ A;  5L0B A;  1ALJ A;  3NKN A;  5L0E A;  3LXQ A;  4LRA A;  1KHJ A;  1SHQ A;  4KJD A;  5C66 A;  4YR1 A;  4CXS A;  2X98 A;  4ZGA A;  4GTX A;  4TN0 A;  1E3C P;  1Y6V A;  3E2D A; 
#chains in the Genus database with same CATH homology
 1E1Z P;  2XR9 A;  2G9Y A;  4UPI A;  4NWJ A;  1B8J A;  5LIA A;  4LRB A;  5DLT A;  3A52 A;  4LRD A;  5EGE A;  3CMR A;  5DLV A;  1AJB A;  1P49 A;  4UOO A;  5GOV A;  3SZZ A;  5AJ9 A;  2D1G A;  3IDD A;  2W5W A;  3MK2 A;  1EW9 A;  1HDH A;  1EJJ A;  1URA A;  1ANI A;  2RH6 A;  1ED8 A;  3TX0 A;  5LQQ A;  1ALH A;  1KH4 A;  1EQJ A;  4CXU A;  3OT9 A;  5INH A;  2W5Q A;  2GA3 A;  3Q3Q A;  4UOP A;  4GTZ A;  1ALI A;  1ELY A;  3UO0 A;  3NKP A;  3WAY A;  3NKQ A;  2ANH A;  2W5R A;  5EGH A;  2W8S A;  2GLQ A;  1KHN A;  4GTY A;  4MHX A;  1AUK A;  1KH7 A;  3BDF A;  4N7T A;  4UPK A;  2QZU A;  5IJS A;  2W5T A;  3T01 A;  4KAY A;  3KD8 A;  4LR7 A;  1URB A;  1KHK A;  3TWZ A;  1EW8 A;  3DPC A;  1ANJ A;  4LR9 A;  3WAW A;  2W5V A;  3BDG B;  4KAV A;  3WAX A;  3M7V A;  2W5X A;  3NVL A;  1KH9 A;  3NKM A;  3B5Q A;  2IUC B;  2GSU A;  5L0K A;  4UPL A;  1ELX A;  2ZKT A;  3M8Z A;  3SZY A;  1ZED A;  4CYR A;  1EW2 A;  3NKO A;  1O98 A;  1KH5 A;  4MIV A;  3DYC A;  4LRF A;  3T02 A;  2W8D A;  4QAX A;  3WAV A;  4UOR A;  4ZG9 A;  4KM4 A;  3MK0 A;  1AJA A;  4LR8 A;  1ELZ A;  1ZEF A;  3TG0 A;  1O99 A;  1N2L A;  4KJG A;  4LQY A;  2GSN A;  4LRC A;  1HQA A;  1Y7A A;  5DLW A;  3UNY A;  4ZG6 A;  2VQR A;  2XRG A;  4ZG7 A;  1AJC A;  1KHL A;  1E2S P;  5GRR A;  4LRE A;  3NKR A;  4LR2 A;  3UN2 A;  3BDH A;  3M8Y A;  1E33 P;  2IFY A;  1EI6 A;  1ALK A;  3BDG A;  3IGZ B;  1ED9 A;  5LRM A;  5LRN A;  5HRT A;  2IUC A;  3T00 A;  4FDI A;  4CYS A;  5IJQ A;  5KXA A;  1HJK A;  3MK1 A;  3IGY B;  5TJ3 A;  1SHN A;  1ZEB A;  4GTW A;  4NWX A;  3UN3 A;  2W5S A;  3WBH A;  1AJD A;  3ED4 A;  4CXK A;  1FSU A;  3UN5 A;  5K4P A;  3M8W A;  1N2K A;  4B56 A;  4MY4 A;  4UPH A;  2GSO A;  1K7H A;  4FDJ A;  5L0B A;  1ALJ A;  3NKN A;  5L0E A;  3LXQ A;  4LRA A;  1KHJ A;  1SHQ A;  4KJD A;  5C66 A;  4YR1 A;  4CXS A;  2X98 A;  4ZGA A;  4GTX A;  4TN0 A;  1E3C P;  1Y6V A;  3E2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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