1Y7AA

Structure of d153h/k328w e. coli alkaline phosphatase in presence of cobalt at 1.77 a resolution
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDWQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title Metal Specificity Is Correlated with Two Crucial Active Site Residues in Escherichia coli Alkaline Phosphatase(,).
pubmed doi rcsb
source organism Escherichia coli
total genus 162
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2004-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1y7aA00
2VQRA 1ALKA 4KJGA 4GTWA 4KJDA 2GSNA 4GTYA 5IJSA 1KH4A 2W8DA 3E2DA 3T02A 4UPKA 3SZYA 2W5XA 3NVLA 3MK1A 4QAXA 1ED8A 5KXAA 4CXKA 4UPLA 5DLVA 2D1GA 2X98A 1HQAA 5EGEA 3UNYA 1SHNA 2W8SA 3NKOA 2W5WA 1KHJA 1E2SP 3BDFA 2W5QA 3WAYA 1ALJA 1N2LA 3M8YA 1ZEDA 4KAVA 1E3CP 1SHQA 4FDIA 5LRMA 2W5TA 3MK2A 1P49A 1ALIA 3M8WA 1EQJA 4UPHA 3UN5A 5L0EA 1ZEFA 1ALHA 3T00A 4TN0A 5INHA 1Y7AA 3WBHA 1AUKA 1URAA 1ANJA 1KHLA 4CYRA 5C66A 2GA3A 2GSOA 3MK0A 3TX0A 4FDJA 3BDGA 3NKRA 1KH9A 5LQQA 1ED9A 1O98A 4NWJA 5AJ9A 4ZG9A 2GLQA 4ZG7A 3NKNA 1EW8A 3A52A 3NKQA 1KH5A 4LRFA 4LRDA 5EGHA 1FSUA 4LREA 3NKMA 4LRAA 1URBA 4GTZA 1HDHA 3IGYB 5DLTA 5GRRA 3TWZA 5L0BA 1AJBA 1Y6VA 4LRBA 4LR2A 4LQYA 3KD8A 3M7VA 4UOPA 2ANHA 3IGZB 3M8ZA 4CYSA 4N7TA 3WAWA 3OT9A 5K4PA 5TJ3A 3DYCA 2XR9A 3UN2A 1ELZA 3IDDA 3NKPA 4GTXA 4MY4A 5DLWA 4NWXA 2QZUA 3BDGB 3B5QA 1HJKA 3LXQA 2ZKTA 1ELYA 1ZEBA 1N2KA 1AJDA 2IFYA 1KHNA 1O99A 2RH6A 1EW2A 1ELXA 4LR9A 4ZG6A 1AJCA 4LR8A 2IUCA 4MHXA 4LR7A 1EW9A 4CXUA 5IJQA 4UOOA 1B8JA 2G9YA 2XRGA 1E33P 3Q3QA 3UO0A 4B56A 4YR1A 5LRNA 3TG0A 1K7HA 5HRTA 3BDHA 3WAVA 4ZGAA 2IUCB 1E1ZP 4KAYA 1KHKA 5LIAA 3WAXA 1EJJA 5L0KA 1EI6A 1KH7A 3ED4A 4CXSA 4LRCA 2W5VA 5GOVA 2W5RA 4UORA 4MIVA 3CMRA 3DPCA 4UPIA 4KM4A 3T01A 3SZZA 3UN3A 1ANIA 1AJAA 2W5SA 2GSUA
chains in the Genus database with same CATH superfamily
2VQRA 1ALKA 4KJGA 4GTWA 4KJDA 2GSNA 4GTYA 5IJSA 1KH4A 2W8DA 3E2DA 3T02A 4UPKA 3SZYA 2W5XA 3NVLA 3MK1A 4QAXA 1ED8A 5KXAA 4CXKA 4UPLA 5DLVA 2D1GA 2X98A 1HQAA 5EGEA 3UNYA 1SHNA 2W8SA 3NKOA 2W5WA 1KHJA 1E2SP 3BDFA 2W5QA 3WAYA 1ALJA 1N2LA 3M8YA 1ZEDA 4KAVA 1E3CP 1SHQA 4FDIA 5LRMA 2W5TA 3MK2A 1P49A 1ALIA 3M8WA 1EQJA 4UPHA 3UN5A 5L0EA 1ZEFA 1ALHA 3T00A 4TN0A 5INHA 1Y7AA 3WBHA 1AUKA 1URAA 1ANJA 1KHLA 4CYRA 5C66A 2GA3A 2GSOA 3MK0A 3TX0A 4FDJA 3BDGA 3NKRA 1KH9A 5LQQA 1ED9A 1O98A 4NWJA 5AJ9A 4ZG9A 2GLQA 4ZG7A 3NKNA 1EW8A 3A52A 3NKQA 1KH5A 4LRFA 4LRDA 5EGHA 1FSUA 4LREA 3NKMA 4LRAA 1URBA 4GTZA 1HDHA 3IGYB 5DLTA 5GRRA 3TWZA 5L0BA 1AJBA 1Y6VA 4LRBA 4LR2A 4LQYA 3KD8A 3M7VA 4UOPA 2ANHA 3IGZB 3M8ZA 4CYSA 4N7TA 3WAWA 3OT9A 5K4PA 5TJ3A 3DYCA 2XR9A 3UN2A 1ELZA 3IDDA 3NKPA 4GTXA 4MY4A 5DLWA 4NWXA 2QZUA 3BDGB 3B5QA 1HJKA 3LXQA 2ZKTA 1ELYA 1ZEBA 1N2KA 1AJDA 2IFYA 1KHNA 1O99A 2RH6A 1EW2A 1ELXA 4LR9A 4ZG6A 1AJCA 4LR8A 2IUCA 4MHXA 4LR7A 1EW9A 4CXUA 5IJQA 4UOOA 1B8JA 2G9YA 2XRGA 1E33P 3Q3QA 3UO0A 4B56A 4YR1A 5LRNA 3TG0A 1K7HA 5HRTA 3BDHA 3WAVA 4ZGAA 2IUCB 1E1ZP 4KAYA 1KHKA 5LIAA 3WAXA 1EJJA 5L0KA 1EI6A 1KH7A 3ED4A 4CXSA 4LRCA 2W5VA 5GOVA 2W5RA 4UORA 4MIVA 3CMRA 3DPCA 4UPIA 4KM4A 3T01A 3SZZA 3UN3A 1ANIA 1AJAA 2W5SA 2GSUA
chains in the Genus database with same CATH topology
2VQRA 1ALKA 4KJGA 4GTWA 4KJDA 2GSNA 4GTYA 5IJSA 1KH4A 2W8DA 3E2DA 3T02A 4UPKA 3SZYA 2W5XA 3NVLA 3MK1A 4QAXA 1ED8A 5KXAA 4CXKA 4UPLA 5DLVA 2D1GA 2X98A 1HQAA 5EGEA 3UNYA 1SHNA 2W8SA 3NKOA 2W5WA 1KHJA 1E2SP 3BDFA 2W5QA 3WAYA 1ALJA 1N2LA 3M8YA 1ZEDA 4KAVA 1E3CP 1SHQA 4FDIA 5LRMA 2W5TA 3MK2A 1P49A 1ALIA 3M8WA 1EQJA 4UPHA 3UN5A 5L0EA 1ZEFA 1ALHA 3T00A 4TN0A 5INHA 1Y7AA 3WBHA 1AUKA 1URAA 1ANJA 1KHLA 4CYRA 5C66A 2GA3A 2GSOA 3MK0A 3TX0A 4FDJA 3BDGA 3NKRA 1KH9A 5LQQA 1ED9A 1O98A 4NWJA 5AJ9A 4ZG9A 2GLQA 4ZG7A 3NKNA 1EW8A 3A52A 3NKQA 1KH5A 4LRFA 4LRDA 5EGHA 1FSUA 4LREA 3NKMA 4LRAA 1URBA 4GTZA 1HDHA 3IGYB 5DLTA 5GRRA 3TWZA 5L0BA 1AJBA 1Y6VA 4LRBA 4LR2A 4LQYA 3KD8A 3M7VA 4UOPA 2ANHA 3IGZB 3M8ZA 4CYSA 4N7TA 3WAWA 3OT9A 5K4PA 5TJ3A 3DYCA 2XR9A 3UN2A 1ELZA 3IDDA 3NKPA 4GTXA 4MY4A 5DLWA 4NWXA 2QZUA 3BDGB 3B5QA 1HJKA 3LXQA 2ZKTA 1ELYA 1ZEBA 1N2KA 1AJDA 2IFYA 1KHNA 1O99A 2RH6A 1EW2A 1ELXA 4LR9A 4ZG6A 1AJCA 4LR8A 2IUCA 4MHXA 4LR7A 1EW9A 4CXUA 5IJQA 4UOOA 1B8JA 2G9YA 2XRGA 1E33P 3Q3QA 3UO0A 4B56A 4YR1A 5LRNA 3TG0A 1K7HA 5HRTA 3BDHA 3WAVA 4ZGAA 2IUCB 1E1ZP 4KAYA 1KHKA 5LIAA 3WAXA 1EJJA 5L0KA 1EI6A 1KH7A 3ED4A 4CXSA 4LRCA 2W5VA 5GOVA 2W5RA 4UORA 4MIVA 3CMRA 3DPCA 4UPIA 4KM4A 3T01A 3SZZA 3UN3A 1ANIA 1AJAA 2W5SA 2GSUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VQR A;  1ALK A;  4KJG A;  4GTW A;  4KJD A;  2GSN A;  4GTY A;  5IJS A;  1KH4 A;  2W8D A;  3E2D A;  3T02 A;  4UPK A;  3SZY A;  2W5X A;  3NVL A;  3MK1 A;  4QAX A;  1ED8 A;  5KXA A;  4CXK A;  4UPL A;  5DLV A;  2D1G A;  2X98 A;  1HQA A;  5EGE A;  3UNY A;  1SHN A;  2W8S A;  3NKO A;  2W5W A;  1KHJ A;  1E2S P;  3BDF A;  2W5Q A;  3WAY A;  1ALJ A;  1N2L A;  3M8Y A;  1ZED A;  4KAV A;  1E3C P;  1SHQ A;  4FDI A;  5LRM A;  2W5T A;  3MK2 A;  1P49 A;  1ALI A;  3M8W A;  1EQJ A;  4UPH A;  3UN5 A;  5L0E A;  1ZEF A;  1ALH A;  3T00 A;  4TN0 A;  5INH A;  1Y7A A;  3WBH A;  1AUK A;  1URA A;  1ANJ A;  1KHL A;  4CYR A;  5C66 A;  2GA3 A;  2GSO A;  3MK0 A;  3TX0 A;  4FDJ A;  3BDG A;  3NKR A;  1KH9 A;  5LQQ A;  1ED9 A;  1O98 A;  4NWJ A;  5AJ9 A;  4ZG9 A;  2GLQ A;  4ZG7 A;  3NKN A;  1EW8 A;  3A52 A;  3NKQ A;  1KH5 A;  4LRF A;  4LRD A;  5EGH A;  1FSU A;  4LRE A;  3NKM A;  4LRA A;  1URB A;  4GTZ A;  1HDH A;  3IGY B;  5DLT A;  5GRR A;  3TWZ A;  5L0B A;  1AJB A;  1Y6V A;  4LRB A;  4LR2 A;  4LQY A;  3KD8 A;  3M7V A;  4UOP A;  2ANH A;  3IGZ B;  3M8Z A;  4CYS A;  4N7T A;  3WAW A;  3OT9 A;  5K4P A;  5TJ3 A;  3DYC A;  2XR9 A;  3UN2 A;  1ELZ A;  3IDD A;  3NKP A;  4GTX A;  4MY4 A;  5DLW A;  4NWX A;  2QZU A;  3BDG B;  3B5Q A;  1HJK A;  3LXQ A;  2ZKT A;  1ELY A;  1ZEB A;  1N2K A;  1AJD A;  2IFY A;  1KHN A;  1O99 A;  2RH6 A;  1EW2 A;  1ELX A;  4LR9 A;  4ZG6 A;  1AJC A;  4LR8 A;  2IUC A;  4MHX A;  4LR7 A;  1EW9 A;  4CXU A;  5IJQ A;  4UOO A;  1B8J A;  2G9Y A;  2XRG A;  1E33 P;  3Q3Q A;  3UO0 A;  4B56 A;  4YR1 A;  5LRN A;  3TG0 A;  1K7H A;  5HRT A;  3BDH A;  3WAV A;  4ZGA A;  2IUC B;  1E1Z P;  4KAY A;  1KHK A;  5LIA A;  3WAX A;  1EJJ A;  5L0K A;  1EI6 A;  1KH7 A;  3ED4 A;  4CXS A;  4LRC A;  2W5V A;  5GOV A;  2W5R A;  4UOR A;  4MIV A;  3CMR A;  3DPC A;  4UPI A;  4KM4 A;  3T01 A;  3SZZ A;  3UN3 A;  1ANI A;  1AJA A;  2W5S A;  2GSU A; 
#chains in the Genus database with same CATH topology
 2VQR A;  1ALK A;  4KJG A;  4GTW A;  4KJD A;  2GSN A;  4GTY A;  5IJS A;  1KH4 A;  2W8D A;  3E2D A;  3T02 A;  4UPK A;  3SZY A;  2W5X A;  3NVL A;  3MK1 A;  4QAX A;  1ED8 A;  5KXA A;  4CXK A;  4UPL A;  5DLV A;  2D1G A;  2X98 A;  1HQA A;  5EGE A;  3UNY A;  1SHN A;  2W8S A;  3NKO A;  2W5W A;  1KHJ A;  1E2S P;  3BDF A;  2W5Q A;  3WAY A;  1ALJ A;  1N2L A;  3M8Y A;  1ZED A;  4KAV A;  1E3C P;  1SHQ A;  4FDI A;  5LRM A;  2W5T A;  3MK2 A;  1P49 A;  1ALI A;  3M8W A;  1EQJ A;  4UPH A;  3UN5 A;  5L0E A;  1ZEF A;  1ALH A;  3T00 A;  4TN0 A;  5INH A;  1Y7A A;  3WBH A;  1AUK A;  1URA A;  1ANJ A;  1KHL A;  4CYR A;  5C66 A;  2GA3 A;  2GSO A;  3MK0 A;  3TX0 A;  4FDJ A;  3BDG A;  3NKR A;  1KH9 A;  5LQQ A;  1ED9 A;  1O98 A;  4NWJ A;  5AJ9 A;  4ZG9 A;  2GLQ A;  4ZG7 A;  3NKN A;  1EW8 A;  3A52 A;  3NKQ A;  1KH5 A;  4LRF A;  4LRD A;  5EGH A;  1FSU A;  4LRE A;  3NKM A;  4LRA A;  1URB A;  4GTZ A;  1HDH A;  3IGY B;  5DLT A;  5GRR A;  3TWZ A;  5L0B A;  1AJB A;  1Y6V A;  4LRB A;  4LR2 A;  4LQY A;  3KD8 A;  3M7V A;  4UOP A;  2ANH A;  3IGZ B;  3M8Z A;  4CYS A;  4N7T A;  3WAW A;  3OT9 A;  5K4P A;  5TJ3 A;  3DYC A;  2XR9 A;  3UN2 A;  1ELZ A;  3IDD A;  3NKP A;  4GTX A;  4MY4 A;  5DLW A;  4NWX A;  2QZU A;  3BDG B;  3B5Q A;  1HJK A;  3LXQ A;  2ZKT A;  1ELY A;  1ZEB A;  1N2K A;  1AJD A;  2IFY A;  1KHN A;  1O99 A;  2RH6 A;  1EW2 A;  1ELX A;  4LR9 A;  4ZG6 A;  1AJC A;  4LR8 A;  2IUC A;  4MHX A;  4LR7 A;  1EW9 A;  4CXU A;  5IJQ A;  4UOO A;  1B8J A;  2G9Y A;  2XRG A;  1E33 P;  3Q3Q A;  3UO0 A;  4B56 A;  4YR1 A;  5LRN A;  3TG0 A;  1K7H A;  5HRT A;  3BDH A;  3WAV A;  4ZGA A;  2IUC B;  1E1Z P;  4KAY A;  1KHK A;  5LIA A;  3WAX A;  1EJJ A;  5L0K A;  1EI6 A;  1KH7 A;  3ED4 A;  4CXS A;  4LRC A;  2W5V A;  5GOV A;  2W5R A;  4UOR A;  4MIV A;  3CMR A;  3DPC A;  4UPI A;  4KM4 A;  3T01 A;  3SZZ A;  3UN3 A;  1ANI A;  1AJA A;  2W5S A;  2GSU A; 
#chains in the Genus database with same CATH homology
 2VQR A;  1ALK A;  4KJG A;  4GTW A;  4KJD A;  2GSN A;  4GTY A;  5IJS A;  1KH4 A;  2W8D A;  3E2D A;  3T02 A;  4UPK A;  3SZY A;  2W5X A;  3NVL A;  3MK1 A;  4QAX A;  1ED8 A;  5KXA A;  4CXK A;  4UPL A;  5DLV A;  2D1G A;  2X98 A;  1HQA A;  5EGE A;  3UNY A;  1SHN A;  2W8S A;  3NKO A;  2W5W A;  1KHJ A;  1E2S P;  3BDF A;  2W5Q A;  3WAY A;  1ALJ A;  1N2L A;  3M8Y A;  1ZED A;  4KAV A;  1E3C P;  1SHQ A;  4FDI A;  5LRM A;  2W5T A;  3MK2 A;  1P49 A;  1ALI A;  3M8W A;  1EQJ A;  4UPH A;  3UN5 A;  5L0E A;  1ZEF A;  1ALH A;  3T00 A;  4TN0 A;  5INH A;  1Y7A A;  3WBH A;  1AUK A;  1URA A;  1ANJ A;  1KHL A;  4CYR A;  5C66 A;  2GA3 A;  2GSO A;  3MK0 A;  3TX0 A;  4FDJ A;  3BDG A;  3NKR A;  1KH9 A;  5LQQ A;  1ED9 A;  1O98 A;  4NWJ A;  5AJ9 A;  4ZG9 A;  2GLQ A;  4ZG7 A;  3NKN A;  1EW8 A;  3A52 A;  3NKQ A;  1KH5 A;  4LRF A;  4LRD A;  5EGH A;  1FSU A;  4LRE A;  3NKM A;  4LRA A;  1URB A;  4GTZ A;  1HDH A;  3IGY B;  5DLT A;  5GRR A;  3TWZ A;  5L0B A;  1AJB A;  1Y6V A;  4LRB A;  4LR2 A;  4LQY A;  3KD8 A;  3M7V A;  4UOP A;  2ANH A;  3IGZ B;  3M8Z A;  4CYS A;  4N7T A;  3WAW A;  3OT9 A;  5K4P A;  5TJ3 A;  3DYC A;  2XR9 A;  3UN2 A;  1ELZ A;  3IDD A;  3NKP A;  4GTX A;  4MY4 A;  5DLW A;  4NWX A;  2QZU A;  3BDG B;  3B5Q A;  1HJK A;  3LXQ A;  2ZKT A;  1ELY A;  1ZEB A;  1N2K A;  1AJD A;  2IFY A;  1KHN A;  1O99 A;  2RH6 A;  1EW2 A;  1ELX A;  4LR9 A;  4ZG6 A;  1AJC A;  4LR8 A;  2IUC A;  4MHX A;  4LR7 A;  1EW9 A;  4CXU A;  5IJQ A;  4UOO A;  1B8J A;  2G9Y A;  2XRG A;  1E33 P;  3Q3Q A;  3UO0 A;  4B56 A;  4YR1 A;  5LRN A;  3TG0 A;  1K7H A;  5HRT A;  3BDH A;  3WAV A;  4ZGA A;  2IUC B;  1E1Z P;  4KAY A;  1KHK A;  5LIA A;  3WAX A;  1EJJ A;  5L0K A;  1EI6 A;  1KH7 A;  3ED4 A;  4CXS A;  4LRC A;  2W5V A;  5GOV A;  2W5R A;  4UOR A;  4MIV A;  3CMR A;  3DPC A;  4UPI A;  4KM4 A;  3T01 A;  3SZZ A;  3UN3 A;  1ANI A;  1AJA A;  2W5S A;  2GSU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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