1Y8FA

Solution structure of the munc13-1 c1-domain
Total Genus 5
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
51
structure length
51
Chain Sequence
QHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Endocytosis/exocytosis,signaling protein
molecule keywords Unc-13 homolog A
publication title Intramolecular occlusion of the diacylglycerol-binding site in the C1 domain of munc13-1.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 5
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2004-12-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.20 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1y8fA00
5FUYA 2DB6A 3UGDA 2ELIA 1TBNA 3BJIA 3UEJA 2ORVA 2JA1A 2QPOA 2UZ3A 1KBFA 1PTQA 2E73A 4UXHA 2VRWB 1XBTA 2QQEA 3UGIA 2ENNA 2J87A 2ROWA 2J9RA 1PTRA 2WVJA 5FUVA 1RFHA 1XA6A 1R79A 4FKDA 1TBOA 3UGLA 1Y8FA 5FUWA 3UEYA 1FAQA 1W4RA 3KY9A 2ORWA 2QQ0A 1KBEA 1XX6A 2YUUA 5FUXA 2FNFX 2B8TA 4UXIA 4UXJA 1FARA 3E2IA 4B6DA 2GVIA 3UFFA 4L9MA 2ENZA 3CXLA
chains in the Genus database with same CATH superfamily
3R5DA 2DB6A 3UGDA 1TBNA 2UZ3A 3SEKC 5J8CA 2SGFI 1CT0I 1XBTA 1AN1I 1X4SA 4AMLA 2V53A 2KMRA 5HQ8A 2WCYA 1X74A 2DKVA 1CT4I 2X52A 1FYBA 3VDUA 1UHAA 1U5KA 1KMAA 2NU2I 1NUBA 1SGDI 1MJBA 2V1CC 3OL0A 2QQDA 5FUVA 1BUSA 1RFHA 1XA6A 2W0TA 1TBOA 4WP4A 1TBQR 2NU0I 1WTJA 2ARPF 5E3PA 5FUWA 3UEYA 1FAQA 1MJAA 2SGQI 1W4RA 2NU1I 1TBRR 5E3RA 1PJUA 1K7UA 1LR7A 5CCLA 2YUUA 1CE3A 3HH2C 5FUXA 1OMUA 1M8CA 1DS2I 3UFFA 3PDNA 1R0RI 4L9MA 2LEOA 3CXLA 5FUYA 1TUSA 2UVOA 1HDLA 1N13A 3UEJA 1SGEI 2ORVA 2K9HA 2WGCA 1Z2IA 4E1PA 1CHOI 4UXHA 3GOXA 3TO6A 1ULNA 4SGBI 1CT2I 4DNCA 5HI7A 1M8BA 2J9RA 3VE5A 1K7TA 2ODDA 2LUYA 1PTRA 2N1AB 2Y0MA 3FSXA 4OVOA 2LB7A 1IY6A 1P9ZA 2P6AC 1V1IA 1TOTA 2L7XA 1HPTA 4FKDA 3QWPA 3UGLA 1K7VA 1WGCA 1PCEA 1Y8FA 2CWGA 3D00A 5DAEA 2N71A 3SGQI 1TIHA 2JZMA 2L8EA 2SGPI 2ORWA 3KY9A 4JCVE 1HJAI 3TO9A 2JXDA 2NU3I 1KBEA 3TJQA 2V1CA 1DS3I 1ULMA 2F3CI 9WGAA 1NXUA 1W3SA 1UVFA 2GKTI 3E2IA 4B6DA 2GVIA 3VDPA 2JYYA 1OMTA 1BMOA 2OVOA 7WGAA 2ELIA 2OD1A 1LR9A 1V1HA 3BJIA 2QPOA 2SGEI 2KMOA 1KBFA 2E73A 4E1RA 4A24A 2M5XA 5JHWC 1YU6C 2QQEA 3OXLA 1MJ9A 2KCXA 5J8FA 2E5RA 1Q9BA 2GKRI 2N17A 3FSYA 3MEKA 1WGTA 1R79A 2BUSA 2JW6A 2NU4I 1H0ZA 3OVOA 2CWFA 3E59A 1WKXA 1TGSI 3R5AA 2KMPA 1Y1CA 1UVGA 3R5BA 4HGUA 5E3QA 1Y1BA 3FC3A 2SGDI 3QTLD 2FNFX 2B8TA 2CWHA 1SGPI 2QQCA 4UXIA 1UUCA 4UXJA 2PQ8A 2XRCA 2ENZA 3UOEA 2OZUA 3R5CA 1MT1A 1OYVI 1ULKA 2JA1A 1S20A 1PTQA 2N52A 1SGNI 3QAHA 5EX0A 2VRWB 1LR8A 2OU2A 3TOAA 3UGIA 1IW4A 2ENNA 1SGYI 2A20A 2RC4A 2J87A 2ROWA 1VDDA 1Z7KB 1OVOA 1HEVA 1CGII 2GKVA 2WVJA 4GI3C 1CGJI 3OXGA 2RIJA 1IY5A 4MPIA 1CSOI 3TO7A 2ERWA 1YTPA 3OXFA 2KMQA 5CCMA 1PPFI 2QQ0A 2X3TA 1XX6A 1P9GA 1SGRI 2GIVA 1TURA 2DIPA 1SGQI 2YQPA 2CJSC 3B4VC 3RU0A 3SGBI 3TOBA 1FARA 2B0UC 5EX3A 1FY7A
chains in the Genus database with same CATH topology
2DB6A 3UGDA 1TBNA 2UZ3A 3SEKC 2SGFI 1CT0I 1XBTA 1AN1I 1X4SA 5HQ8A 2V53A 2KMRA 2WCYA 1X74A 1CT4I 1FYBA 3VDUA 1U5KA 1KMAA 2NU2I 1NUBA 1SGDI 2V1CC 3OL0A 5FUVA 2QQDA 1BUSA 1RFHA 1XA6A 2W0TA 1TBOA 1TBQR 2NU0I 2ARPF 5FUWA 3UEYA 1FAQA 2SGQI 1W4RA 2NU1I 1TBRR 1PJUA 5CCLA 1LR7A 2YUUA 1CE3A 3HH2C 5FUXA 1OMUA 1M8CA 1DS2I 3UFFA 3PDNA 1R0RI 4L9MA 2LEOA 3CXLA 5FUYA 1TUSA 1N13A 3UEJA 1SGEI 2ORVA 2K9HA 4E1PA 1CHOI 4UXHA 3GOXA 4SGBI 1CT2I 5HI7A 1M8BA 2J9RA 3VE5A 2ODDA 2LUYA 1PTRA 2N1AB 4OVOA 1IY6A 2P6AC 1V1IA 1TOTA 2L7XA 1HPTA 4FKDA 3QWPA 3UGLA 1Y8FA 3D00A 1PCEA 5DAEA 3SGQI 2N71A 1TIHA 2JZMA 2L8EA 2SGPI 2ORWA 3KY9A 4JCVE 1HJAI 1HDLA 2JXDA 2NU3I 1KBEA 3TJQA 2V1CA 1DS3I 2F3CI 1W3SA 1UVFA 2GKTI 3E2IA 4B6DA 2GVIA 3VDPA 2JYYA 1OMTA 1BMOA 2OVOA 2ELIA 2OD1A 1LR9A 1V1HA 3BJIA 2QPOA 2SGEI 2KMOA 1KBFA 2E73A 4E1RA 4A24A 2M5XA 5JHWC 1YU6C 2QQEA 3OXLA 2KCXA 2E5RA 2GKRI 2N17A 3MEKA 1R79A 2BUSA 2JW6A 2NU4I 1H0ZA 3OVOA 3E59A 1TGSI 2KMPA 1Y1CA 1UVGA 4HGUA 3FC3A 1Y1BA 2SGDI 3QTLD 2FNFX 2B8TA 4UXIA 1SGPI 2QQCA 4UXJA 1UUCA 2XRCA 2ENZA 1MT1A 1OYVI 2JA1A 5EX0A 2N52A 1PTQA 1IW4A 1SGNI 2VRWB 1LR8A 3UGIA 2ENNA 1SGYI 2A20A 2J87A 2ROWA 1VDDA 1Z7KB 1OVOA 1CGII 2GKVA 2WVJA 4GI3C 1CGJI 3OXGA 1IY5A 1CSOI 2ERWA 1YTPA 3OXFA 2KMQA 5CCMA 1PPFI 2QQ0A 1XX6A 1SGRI 3B4VC 2YQPA 1TURA 2DIPA 1SGQI 3RU0A 2CJSC 3SGBI 1FARA 2B0UC 5EX3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FUY A;  2DB6 A;  3UGD A;  2ELI A;  1TBN A;  3BJI A;  3UEJ A;  2ORV A;  2JA1 A;  2QPO A;  2UZ3 A;  1KBF A;  1PTQ A;  2E73 A;  4UXH A;  2VRW B;  1XBT A;  2QQE A;  3UGI A;  2ENN A;  2J87 A;  2ROW A;  2J9R A;  1PTR A;  2WVJ A;  5FUV A;  1RFH A;  1XA6 A;  1R79 A;  4FKD A;  1TBO A;  3UGL A;  1Y8F A;  5FUW A;  3UEY A;  1FAQ A;  1W4R A;  3KY9 A;  2ORW A;  2QQ0 A;  1KBE A;  1XX6 A;  2YUU A;  5FUX A;  2FNF X;  2B8T A;  4UXI A;  4UXJ A;  1FAR A;  3E2I A;  4B6D A;  2GVI A;  3UFF A;  4L9M A;  2ENZ A;  3CXL A; 
#chains in the Genus database with same CATH topology
 3R5D A;  2DB6 A;  3UGD A;  1TBN A;  2UZ3 A;  3SEK C;  5J8C A;  2SGF I;  1CT0 I;  1XBT A;  1AN1 I;  1X4S A;  4AML A;  2V53 A;  2KMR A;  5HQ8 A;  2WCY A;  1X74 A;  2DKV A;  1CT4 I;  2X52 A;  1FYB A;  3VDU A;  1UHA A;  1U5K A;  1KMA A;  2NU2 I;  1NUB A;  1SGD I;  1MJB A;  2V1C C;  3OL0 A;  2QQD A;  5FUV A;  1BUS A;  1RFH A;  1XA6 A;  2W0T A;  1TBO A;  4WP4 A;  1TBQ R;  2NU0 I;  1WTJ A;  2ARP F;  5E3P A;  5FUW A;  3UEY A;  1FAQ A;  1MJA A;  2SGQ I;  1W4R A;  2NU1 I;  1TBR R;  5E3R A;  1PJU A;  1K7U A;  1LR7 A;  5CCL A;  2YUU A;  1CE3 A;  3HH2 C;  5FUX A;  1OMU A;  1M8C A;  1DS2 I;  3UFF A;  3PDN A;  1R0R I;  4L9M A;  2LEO A;  3CXL A;  5FUY A;  1TUS A;  2UVO A;  1HDL A;  1N13 A;  3UEJ A;  1SGE I;  2ORV A;  2K9H A;  2WGC A;  1Z2I A;  4E1P A;  1CHO I;  4UXH A;  3GOX A;  3TO6 A;  1ULN A;  4SGB I;  1CT2 I;  4DNC A;  5HI7 A;  1M8B A;  2J9R A;  3VE5 A;  1K7T A;  2ODD A;  2LUY A;  1PTR A;  2N1A B;  2Y0M A;  3FSX A;  4OVO A;  2LB7 A;  1IY6 A;  1P9Z A;  2P6A C;  1V1I A;  1TOT A;  2L7X A;  1HPT A;  4FKD A;  3QWP A;  3UGL A;  1K7V A;  1WGC A;  1PCE A;  1Y8F A;  2CWG A;  3D00 A;  5DAE A;  2N71 A;  3SGQ I;  1TIH A;  2JZM A;  2L8E A;  2SGP I;  2ORW A;  3KY9 A;  4JCV E;  1HJA I;  3TO9 A;  2JXD A;  2NU3 I;  1KBE A;  3TJQ A;  2V1C A;  1DS3 I;  1ULM A;  2F3C I;  9WGA A;  1NXU A;  1W3S A;  1UVF A;  2GKT I;  3E2I A;  4B6D A;  2GVI A;  3VDP A;  2JYY A;  1OMT A;  1BMO A;  2OVO A;  7WGA A;  2ELI A;  2OD1 A;  1LR9 A;  1V1H A;  3BJI A;  2QPO A;  2SGE I;  2KMO A;  1KBF A;  2E73 A;  4E1R A;  4A24 A;  2M5X A;  5JHW C;  1YU6 C;  2QQE A;  3OXL A;  1MJ9 A;  2KCX A;  5J8F A;  2E5R A;  1Q9B A;  2GKR I;  2N17 A;  3FSY A;  3MEK A;  1WGT A;  1R79 A;  2BUS A;  2JW6 A;  2NU4 I;  1H0Z A;  3OVO A;  2CWF A;  3E59 A;  1WKX A;  1TGS I;  3R5A A;  2KMP A;  1Y1C A;  1UVG A;  3R5B A;  4HGU A;  5E3Q A;  1Y1B A;  3FC3 A;  2SGD I;  3QTL D;  2FNF X;  2B8T A;  2CWH A;  1SGP I;  2QQC A;  4UXI A;  1UUC A;  4UXJ A;  2PQ8 A;  2XRC A;  2ENZ A;  3UOE A;  2OZU A;  3R5C A;  1MT1 A;  1OYV I;  1ULK A;  2JA1 A;  1S20 A;  1PTQ A;  2N52 A;  1SGN I;  3QAH A;  5EX0 A;  2VRW B;  1LR8 A;  2OU2 A;  3TOA A;  3UGI A;  1IW4 A;  2ENN A;  1SGY I;  2A20 A;  2RC4 A;  2J87 A;  2ROW A;  1VDD A;  1Z7K B;  1OVO A;  1HEV A;  1CGI I;  2GKV A;  2WVJ A;  4GI3 C;  1CGJ I;  3OXG A;  2RIJ A;  1IY5 A;  4MPI A;  1CSO I;  3TO7 A;  2ERW A;  1YTP A;  3OXF A;  2KMQ A;  5CCM A;  1PPF I;  2QQ0 A;  2X3T A;  1XX6 A;  1P9G A;  1SGR I;  2GIV A;  1TUR A;  2DIP A;  1SGQ I;  2YQP A;  2CJS C;  3B4V C;  3RU0 A;  3SGB I;  3TOB A;  1FAR A;  2B0U C;  5EX3 A;  1FY7 A; 
#chains in the Genus database with same CATH homology
 2DB6 A;  3UGD A;  1TBN A;  2UZ3 A;  3SEK C;  2SGF I;  1CT0 I;  1XBT A;  1AN1 I;  1X4S A;  5HQ8 A;  2V53 A;  2KMR A;  2WCY A;  1X74 A;  1CT4 I;  1FYB A;  3VDU A;  1U5K A;  1KMA A;  2NU2 I;  1NUB A;  1SGD I;  2V1C C;  3OL0 A;  5FUV A;  2QQD A;  1BUS A;  1RFH A;  1XA6 A;  2W0T A;  1TBO A;  1TBQ R;  2NU0 I;  2ARP F;  5FUW A;  3UEY A;  1FAQ A;  2SGQ I;  1W4R A;  2NU1 I;  1TBR R;  1PJU A;  5CCL A;  1LR7 A;  2YUU A;  1CE3 A;  3HH2 C;  5FUX A;  1OMU A;  1M8C A;  1DS2 I;  3UFF A;  3PDN A;  1R0R I;  4L9M A;  2LEO A;  3CXL A;  5FUY A;  1TUS A;  1N13 A;  3UEJ A;  1SGE I;  2ORV A;  2K9H A;  4E1P A;  1CHO I;  4UXH A;  3GOX A;  4SGB I;  1CT2 I;  5HI7 A;  1M8B A;  2J9R A;  3VE5 A;  2ODD A;  2LUY A;  1PTR A;  2N1A B;  4OVO A;  1IY6 A;  2P6A C;  1V1I A;  1TOT A;  2L7X A;  1HPT A;  4FKD A;  3QWP A;  3UGL A;  1Y8F A;  3D00 A;  1PCE A;  5DAE A;  3SGQ I;  2N71 A;  1TIH A;  2JZM A;  2L8E A;  2SGP I;  2ORW A;  3KY9 A;  4JCV E;  1HJA I;  1HDL A;  2JXD A;  2NU3 I;  1KBE A;  3TJQ A;  2V1C A;  1DS3 I;  2F3C I;  1W3S A;  1UVF A;  2GKT I;  3E2I A;  4B6D A;  2GVI A;  3VDP A;  2JYY A;  1OMT A;  1BMO A;  2OVO A;  2ELI A;  2OD1 A;  1LR9 A;  1V1H A;  3BJI A;  2QPO A;  2SGE I;  2KMO A;  1KBF A;  2E73 A;  4E1R A;  4A24 A;  2M5X A;  5JHW C;  1YU6 C;  2QQE A;  3OXL A;  2KCX A;  2E5R A;  2GKR I;  2N17 A;  3MEK A;  1R79 A;  2BUS A;  2JW6 A;  2NU4 I;  1H0Z A;  3OVO A;  3E59 A;  1TGS I;  2KMP A;  1Y1C A;  1UVG A;  4HGU A;  3FC3 A;  1Y1B A;  2SGD I;  3QTL D;  2FNF X;  2B8T A;  4UXI A;  1SGP I;  2QQC A;  4UXJ A;  1UUC A;  2XRC A;  2ENZ A;  1MT1 A;  1OYV I;  2JA1 A;  5EX0 A;  2N52 A;  1PTQ A;  1IW4 A;  1SGN I;  2VRW B;  1LR8 A;  3UGI A;  2ENN A;  1SGY I;  2A20 A;  2J87 A;  2ROW A;  1VDD A;  1Z7K B;  1OVO A;  1CGI I;  2GKV A;  2WVJ A;  4GI3 C;  1CGJ I;  3OXG A;  1IY5 A;  1CSO I;  2ERW A;  1YTP A;  3OXF A;  2KMQ A;  5CCM A;  1PPF I;  2QQ0 A;  1XX6 A;  1SGR I;  3B4V C;  2YQP A;  1TUR A;  2DIP A;  1SGQ I;  3RU0 A;  2CJS C;  3SGB I;  1FAR A;  2B0U C;  5EX3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...