1YFEA

Crystal structure of apo fumarase c from escherichia coli
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
457
structure length
457
Chain Sequence
VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Fumarate hydratase class II
publication title Structure of free fumarase C from Escherichia coli.
pubmed doi rcsb
total genus 167
structure length 457
sequence length 457
ec nomenclature ec 4.2.1.2: Fumarate hydratase.
pdb deposition date 2004-12-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1yfeA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yfeA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yfeA02
3OCFA 2OHYA 3UNVA 2O7DA 1TJWA 4V2RA 1U16A 4BAAA 2J91A 3KDYA 2X75A 3R6QA 3RD8A 1DOFA 3GTDA 5D6BA 4MX2A 2VD6A 4C5SA 5F91A 1K7WA 3KDZA 1GKJA 2PTSA 1GKMA 2QVEA 1YFMA 4HGVA 1C3UA 1FUQA 2E9FA 1GK2A 2RJRA 1W27A 2NYFA 4APBA 3TV2A 3CZOA 1K62A 3BHGA 3QBPA 5HW2A 3RRPA 1VDKA 1FUPA 1TJ7A 2O6YA 1T6PA 1J3UA 2YIIA 2RJSA 1TJVA 2FUSA 4C5UA 1B8FA 1YISA 1Y2MA 4FLCA 1HY0A 4BABA 3C8TA 1T6JA 1FUOA 1C3CA 4V2QA 2NYNA 1U15A 4C6GA 3GZHA 1HY1A 1XWOA 3NO9A 1KQ7A 3OCEA 4ADMA 1EB4A 5EYTA 4ADLA 1AUWA 1GK3A 4NLEA 1Q5NA 2PTQA 5EYVA 4NSLA 2O7EA 2O7FA 2O7BA 4EEIA 3E04A 2PTRA 1JSWA 1RE5A 2PFMA 4APAA 2O78A 1I0AA 2HVGA 1TJUA 1YFEA 4CQ5A 1DCNA 4C5RA 4FFXA 3R6VA 5F92A 2QGAB 3R6YA 3NZ4A 4EFCA 1FURA
chains in the Genus database with same CATH superfamily
3OCFA 2OHYA 3UNVA 2O7DA 1TJWA 4V2RA 1XLYA 4WNLA 1U16A 4BAAA 2J91A 2JARA 3KDYA 2X75A 3R6QA 3RD8A 3CRW1 5M0IA 1DOFA 3GTDA 5D6BA 4MX2A 2VD6A 1XL7A 4C5SA 3BWVA 1XL8A 3U13A 3CRVA 5F91A 1K7WA 3U19A 3KDZA 2I7DA 1GKJA 4L6AA 2PTSA 1GKMA 2QVEA 1YFMA 4A15A 1Z4IA 1Z4JA 4HGVA 1Z4KA 1T9HA 1C3UA 1FUQA 2E9FA 5H8WA 2JAWA 1GK2A 2RJRA 1W27A 2NYFA 1U0LA 4APBA 3TV2A 2VL7A 1IW7D 3CZOA 3F4TA 1K62A 3BHGA 3QBPA 5HW2A 3RRPA 1VDKA 1FUPA 1TJ7A 1Z4LA 2O6YA 1T6PA 1J3UA 2YIIA 2RJSA 1TJVA 2FUSA 4C5UA 2JAUA 1B8FA 1YISA 1Y2MA 4FLCA 4YIHA 1MH9A 1HY0A 4BABA 4L6CA 1Z4QA 5M0JA 4YIKA 3C8TA 1T6JA 4E88A 1XMDA 1FUOA 3F4RA 4MWOA 1C3CA 2FENA 4V2QA 4MUMA 2NYNA 1Q92A 1U15A 3GZHA 4C6GA 1HY1A 1XWOA 2D27A 2YV5A 3NO9A 1XMCA 1KQ7A 3OCEA 3CI0K 4ADMA 1EB4A 5EYTA 1Q91A 4ADLA 1AUWA 1GK3A 4NLEA 4L57A 1Q5NA 2PTQA 5EYVA 4IQJM 4NSLA 2O7EA 2O7FA 2O7BA 4EEIA 2D28C 3E04A 2PTRA 1JSWA 1RE5A 2PFMA 4APAA 2O78A 1I0AA 1Z4PX 2HVGA 1TJUA 1YFEA 2FELA 1Z4MA 2JAOA 4CQ5A 2RCNA 1DCNA 4C5RA 4FFXA 3R6VA 4NFLA 5F92A 3F4SA 2QGAB 2VSFA 3R6YA 3NZ4A 4EFCA 1FURA
chains in the Genus database with same CATH topology
3OCFA 2OHYA 3UNVA 2O7DA 1TJWA 4V2RA 1U16A 4BAAA 2J91A 3KDYA 2X75A 3R6QA 3RD8A 1DOFA 3GTDA 5D6BA 4MX2A 2VD6A 4C5SA 5F91A 1K7WA 3KDZA 1GKJA 2PTSA 1GKMA 2QVEA 1YFMA 4HGVA 1C3UA 1FUQA 2E9FA 1GK2A 2RJRA 1W27A 2NYFA 4APBA 3TV2A 3CZOA 1K62A 3BHGA 3QBPA 5HW2A 3RRPA 1VDKA 1FUPA 1TJ7A 2O6YA 1T6PA 1J3UA 2YIIA 2RJSA 1TJVA 2FUSA 4C5UA 1B8FA 1YISA 1Y2MA 4FLCA 1HY0A 4BABA 3C8TA 1T6JA 1FUOA 1C3CA 4V2QA 2NYNA 1U15A 4C6GA 3GZHA 1HY1A 1XWOA 3NO9A 1KQ7A 3OCEA 4ADMA 1EB4A 5EYTA 4ADLA 1AUWA 1GK3A 4NLEA 1Q5NA 2PTQA 5EYVA 4NSLA 2O7EA 2O7FA 2O7BA 4EEIA 3E04A 2PTRA 1JSWA 1RE5A 2PFMA 4APAA 2O78A 1I0AA 2HVGA 1TJUA 1YFEA 4CQ5A 1DCNA 4C5RA 4FFXA 3R6VA 5F92A 2QGAB 3R6YA 3NZ4A 4EFCA 1FURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OCF A;  2OHY A;  3UNV A;  2O7D A;  1TJW A;  4V2R A;  1U16 A;  4BAA A;  2J91 A;  3KDY A;  2X75 A;  3R6Q A;  3RD8 A;  1DOF A;  3GTD A;  5D6B A;  4MX2 A;  2VD6 A;  4C5S A;  5F91 A;  1K7W A;  3KDZ A;  1GKJ A;  2PTS A;  1GKM A;  2QVE A;  1YFM A;  4HGV A;  1C3U A;  1FUQ A;  2E9F A;  1GK2 A;  2RJR A;  1W27 A;  2NYF A;  4APB A;  3TV2 A;  3CZO A;  1K62 A;  3BHG A;  3QBP A;  5HW2 A;  3RRP A;  1VDK A;  1FUP A;  1TJ7 A;  2O6Y A;  1T6P A;  1J3U A;  2YII A;  2RJS A;  1TJV A;  2FUS A;  4C5U A;  1B8F A;  1YIS A;  1Y2M A;  4FLC A;  1HY0 A;  4BAB A;  3C8T A;  1T6J A;  1FUO A;  1C3C A;  4V2Q A;  2NYN A;  1U15 A;  4C6G A;  3GZH A;  1HY1 A;  1XWO A;  3NO9 A;  1KQ7 A;  3OCE A;  4ADM A;  1EB4 A;  5EYT A;  4ADL A;  1AUW A;  1GK3 A;  4NLE A;  1Q5N A;  2PTQ A;  5EYV A;  4NSL A;  2O7E A;  2O7F A;  2O7B A;  4EEI A;  3E04 A;  2PTR A;  1JSW A;  1RE5 A;  2PFM A;  4APA A;  2O78 A;  1I0A A;  2HVG A;  1TJU A;  1YFE A;  4CQ5 A;  1DCN A;  4C5R A;  4FFX A;  3R6V A;  5F92 A;  2QGA B;  3R6Y A;  3NZ4 A;  4EFC A;  1FUR A; 
#chains in the Genus database with same CATH topology
 3OCF A;  2OHY A;  3UNV A;  2O7D A;  1TJW A;  4V2R A;  1XLY A;  4WNL A;  1U16 A;  4BAA A;  2J91 A;  2JAR A;  3KDY A;  2X75 A;  3R6Q A;  3RD8 A;  3CRW 1;  5M0I A;  1DOF A;  3GTD A;  5D6B A;  4MX2 A;  2VD6 A;  1XL7 A;  4C5S A;  3BWV A;  1XL8 A;  3U13 A;  3CRV A;  5F91 A;  1K7W A;  3U19 A;  3KDZ A;  2I7D A;  1GKJ A;  4L6A A;  2PTS A;  1GKM A;  2QVE A;  1YFM A;  4A15 A;  1Z4I A;  1Z4J A;  4HGV A;  1Z4K A;  1T9H A;  1C3U A;  1FUQ A;  2E9F A;  5H8W A;  2JAW A;  1GK2 A;  2RJR A;  1W27 A;  2NYF A;  1U0L A;  4APB A;  3TV2 A;  2VL7 A;  1IW7 D;  3CZO A;  3F4T A;  1K62 A;  3BHG A;  3QBP A;  5HW2 A;  3RRP A;  1VDK A;  1FUP A;  1TJ7 A;  1Z4L A;  2O6Y A;  1T6P A;  1J3U A;  2YII A;  2RJS A;  1TJV A;  2FUS A;  4C5U A;  2JAU A;  1B8F A;  1YIS A;  1Y2M A;  4FLC A;  4YIH A;  1MH9 A;  1HY0 A;  4BAB A;  4L6C A;  1Z4Q A;  5M0J A;  4YIK A;  3C8T A;  1T6J A;  4E88 A;  1XMD A;  1FUO A;  3F4R A;  4MWO A;  1C3C A;  2FEN A;  4V2Q A;  4MUM A;  2NYN A;  1Q92 A;  1U15 A;  3GZH A;  4C6G A;  1HY1 A;  1XWO A;  2D27 A;  2YV5 A;  3NO9 A;  1XMC A;  1KQ7 A;  3OCE A;  3CI0 K;  4ADM A;  1EB4 A;  5EYT A;  1Q91 A;  4ADL A;  1AUW A;  1GK3 A;  4NLE A;  4L57 A;  1Q5N A;  2PTQ A;  5EYV A;  4IQJ M;  4NSL A;  2O7E A;  2O7F A;  2O7B A;  4EEI A;  2D28 C;  3E04 A;  2PTR A;  1JSW A;  1RE5 A;  2PFM A;  4APA A;  2O78 A;  1I0A A;  1Z4P X;  2HVG A;  1TJU A;  1YFE A;  2FEL A;  1Z4M A;  2JAO A;  4CQ5 A;  2RCN A;  1DCN A;  4C5R A;  4FFX A;  3R6V A;  4NFL A;  5F92 A;  3F4S A;  2QGA B;  2VSF A;  3R6Y A;  3NZ4 A;  4EFC A;  1FUR A; 
#chains in the Genus database with same CATH homology
 3OCF A;  2OHY A;  3UNV A;  2O7D A;  1TJW A;  4V2R A;  1U16 A;  4BAA A;  2J91 A;  3KDY A;  2X75 A;  3R6Q A;  3RD8 A;  1DOF A;  3GTD A;  5D6B A;  4MX2 A;  2VD6 A;  4C5S A;  5F91 A;  1K7W A;  3KDZ A;  1GKJ A;  2PTS A;  1GKM A;  2QVE A;  1YFM A;  4HGV A;  1C3U A;  1FUQ A;  2E9F A;  1GK2 A;  2RJR A;  1W27 A;  2NYF A;  4APB A;  3TV2 A;  3CZO A;  1K62 A;  3BHG A;  3QBP A;  5HW2 A;  3RRP A;  1VDK A;  1FUP A;  1TJ7 A;  2O6Y A;  1T6P A;  1J3U A;  2YII A;  2RJS A;  1TJV A;  2FUS A;  4C5U A;  1B8F A;  1YIS A;  1Y2M A;  4FLC A;  1HY0 A;  4BAB A;  3C8T A;  1T6J A;  1FUO A;  1C3C A;  4V2Q A;  2NYN A;  1U15 A;  4C6G A;  3GZH A;  1HY1 A;  1XWO A;  3NO9 A;  1KQ7 A;  3OCE A;  4ADM A;  1EB4 A;  5EYT A;  4ADL A;  1AUW A;  1GK3 A;  4NLE A;  1Q5N A;  2PTQ A;  5EYV A;  4NSL A;  2O7E A;  2O7F A;  2O7B A;  4EEI A;  3E04 A;  2PTR A;  1JSW A;  1RE5 A;  2PFM A;  4APA A;  2O78 A;  1I0A A;  2HVG A;  1TJU A;  1YFE A;  4CQ5 A;  1DCN A;  4C5R A;  4FFX A;  3R6V A;  5F92 A;  2QGA B;  3R6Y A;  3NZ4 A;  4EFC A;  1FUR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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