The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
14
|
sequence length |
105
|
structure length |
105
|
Chain Sequence |
SRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVHELKPGLSGSLSLGDVLYLVNGLYPLTLRWEELS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transferase
|
| molecule keywords |
5' polynucleotide kinase-3' phosphatase catalytic domain
|
| publication title |
The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase.
pubmed doi rcsb |
| source organism |
Mus musculus
|
| total genus |
14
|
| structure length |
105
|
| sequence length |
105
|
| ec nomenclature |
ec
2.7.1.78: Polynucleotide 5'-hydroxyl-kinase. |
| pdb deposition date | 2005-01-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF17913 | FHA_2 | FHA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 3VPY A; 1G3G A; 2G1L A; 2KB4 A; 4D9V A; 2FEZ A; 2JQJ A; 2JKD A; 2CSW A; 1FHQ A; 3I0N A; 3UMZ A; 3MDB A; 4QCJ A; 1K3Q A; 1FHR A; 4H87 A; 2JQL A; 2PIE A; 3UN0 A; 4A0E A; 4EGX A; 4G2S A; 3I6U A; 3POA A; 2KB3 A; 1YJM A; 3UNM A; 1UHT A; 1DMZ A; 4JON A; 3UNN A; 2W3O A; 2FF4 A; 2KKL A; 3OUN A; 1K2N A; 5DJO A; 3ELV A; 1J4K A; 1G6G A; 1R21 A; 1UJX A; 3I6W A; 5E50 A; 3I0M A; 3PO8 A; 1K3J A; 3VA4 A; 2AFF A; 3FM8 A; 1GXC A; 1J4L A; 3UV0 A; 4EJQ A; 2JPE A; 2KFU A; 1LGQ A; 1WLN A; 2LC1 A; 3HUF A; 1K2M A; 2EH0 A; 3HUE A; 1J4Q A; 1QU5 A; 1LGP A; 3HX1 A; 1K3N A; 1J4P A; 3VA1 A; 2XT9 B; 3UOT A; 1J4O A; 1MZK A; 5A8I A; 2A0T A; 1WV3 A; 3KT9 A; 1YJ5 C; 2BRF A; 3GQS A; 3ELS A; 2JQI A; #chains in the Genus database with same CATH topology 1QWT A; 2I2A A; 4V24 A; 1MK2 A; 3VPY A; 1G3G A; 5EJF A; 3VZB A; 4DY6 A; 2G1L A; 1SUW A; 1ZOQ A; 2KB4 A; 1KHX A; 3A77 A; 4D9V A; 2FEZ A; 2JQJ A; 5JEK A; 2JKD A; 2CSW A; 1FHQ A; 3I0N A; 3UMZ A; 3MDB A; 4QCJ A; 5DHT A; 2JGR A; 3AFO A; 1FHR A; 1K3Q A; 4H87 A; 3V80 A; 2JQL A; 1U7V B; 5EJI A; 2PIE A; 3UN0 A; 2I2B A; 4A0E A; 5JER A; 4EGX A; 5JEM A; 3VZD A; 4G2S A; 3V7Y A; 3I6U A; 3DSH A; 1Y3I A; 3POA A; 3S40 A; 1U0T A; 1J2F A; 1U0R A; 4L02 A; 2KB3 A; 1DD1 A; 1YJM A; 1G88 A; 1YT5 A; 3UNM A; 1UHT A; 5C4V A; 1DMZ A; 4JON A; 3UNN A; 5DHR A; 1Z0U A; 4JIV D; 2I2C A; 2W3O A; 2FF4 A; 5EJH A; 2KKL A; 3OUN A; 3PFN A; 1K2N A; 5DJO A; 3ELV A; 5DHQ A; 1U7F B; 1J4K A; 1G6G A; 1R21 A; 1UJX A; 2QV7 A; 3I6W A; 5BVI A; 3V8N A; 5E50 A; 5JEO A; 2I2F A; 3I0M A; 3PO8 A; 4R9P A; 5DHS A; 1K3J A; 3VA4 A; 2AFF A; 1MR1 A; 4KU0 D; 1YGS A; 2P1R A; 3FM8 A; 1GXC A; 1J4L A; 1U7F A; 5EJG A; 3UV0 A; 4WER A; 4EJQ A; 5DHU A; 2JPE A; 1U7V A; 1Y3H A; 5DHP A; 2KFU A; 1LGQ A; 4WRR A; 2Q5F A; 3V7W A; 1WLN A; 2LC1 A; 3V8M A; 3HUF A; 1K2M A; 5JEL A; 2EH0 A; 4HAO A; 3V8R A; 3HUE A; 1J4Q A; 3V8Q A; 1QU5 A; 3DIT A; 3V8P A; 5JEJ A; 1LGP A; 3HX1 A; 1K3N A; 1J4P A; 3VA1 A; 2XT9 B; 3UOT A; 1J4O A; 1MZK A; 2XXS A; 4JIW D; 5A8I A; 2I29 A; 2A0T A; 1Z0Z A; 4A4Y A; 2I2D A; 1WV3 A; 3T5P A; 3KT9 A; 1Z0S A; 1MJS A; 1YJ5 C; 2AN1 A; 3GMJ A; 3VZC A; 2BON A; 1KHU A; 2BRF A; 3V7U A; 3GQS A; 3ELS A; 2QVL A; 2I1W A; 2JQI A; 1DEV A; #chains in the Genus database with same CATH homology 1QWT A; 4V24 A; 1MK2 A; 3VPY A; 1G3G A; 3VZB A; 2G1L A; 1ZOQ A; 2KB4 A; 1KHX A; 3A77 A; 4D9V A; 2FEZ A; 2JQJ A; 5JEK A; 2JKD A; 2CSW A; 1FHQ A; 3I0N A; 3UMZ A; 3MDB A; 4QCJ A; 2JGR A; 1K3Q A; 1FHR A; 4H87 A; 2JQL A; 1U7V B; 2PIE A; 3UN0 A; 4A0E A; 5JER A; 4EGX A; 5JEM A; 3VZD A; 4G2S A; 3I6U A; 3DSH A; 3POA A; 3S40 A; 1J2F A; 4L02 A; 2KB3 A; 1DD1 A; 1YJM A; 1G88 A; 3UNM A; 1UHT A; 5C4V A; 1DMZ A; 4JON A; 3UNN A; 4JIV D; 2W3O A; 2FF4 A; 2KKL A; 3OUN A; 1K2N A; 5DJO A; 3ELV A; 1U7F B; 1J4K A; 1G6G A; 1R21 A; 1UJX A; 2QV7 A; 3I6W A; 5BVI A; 5E50 A; 5JEO A; 3I0M A; 3PO8 A; 4R9P A; 1K3J A; 3VA4 A; 2AFF A; 1MR1 A; 4KU0 D; 1YGS A; 2P1R A; 3FM8 A; 1GXC A; 1J4L A; 1U7F A; 3UV0 A; 4WER A; 4EJQ A; 2JPE A; 1U7V A; 2KFU A; 1LGQ A; 4WRR A; 1WLN A; 2LC1 A; 3HUF A; 1K2M A; 5JEL A; 2EH0 A; 3HUE A; 1J4Q A; 1QU5 A; 3DIT A; 5JEJ A; 1LGP A; 3HX1 A; 1K3N A; 1J4P A; 3VA1 A; 2XT9 B; 3UOT A; 1J4O A; 1MZK A; 2XXS A; 4JIW D; 5A8I A; 2A0T A; 4A4Y A; 1WV3 A; 3T5P A; 3KT9 A; 1MJS A; 1YJ5 C; 3GMJ A; 3VZC A; 2BON A; 1KHU A; 2BRF A; 3GQS A; 3ELS A; 2QVL A; 2JQI A; 1DEV A;
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