1ZBOA

X-ray crystal structure of protein bpp1347 from bordetella parapertussis. northeast structural genomics consortium target bor27.
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
197
structure length
197
Chain Sequence
AEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVADRWAEMLSLPPADKARLLLLPPLDRLREIDAVLAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein BPP1347
publication title Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
rcsb
source organism Bordetella parapertussis
total genus 45
structure length 197
sequence length 197
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.4060.10 Mainly Alpha Orthogonal Bundle LON domain-like fold BPP1347 like domain 1zboA02
2.30.130.40 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 LON domain-like 1zboA01
2ANEA 4CI3B 3M65A 4CI1B 4CI2B 1ZBOA 3LJCA 4TZ4C
chains in the Genus database with same CATH superfamily
1SQWA 2ANEA 3LDFA 1R3FA 3M4XA 1T5YA 4CI2B 2P38A 1IT8A 3M6WA 3HAXA 4DMGA 1Q7HA 2AB4A 2J5TA 3HJWA 1WXWA 3LWQA 1UOYA 2FRXA 1SGVA 1WXXA 2CX1A 3M6UA 4TZ4C 2AS0A 1TE7A 1R3EA 1ZE1A 1ZS7A 3UAIA 3LWVA 3M65A 3IUWA 2CX0A 2Q07A 3LJCA 1J2BA 3MQKA 3LWOA 2APOA 3C0KA 1WK2A 1IT7A 2CWWA 3M6VA 3ZV0C 3LWRA 3VSEA 1XNEA 2AUSA 4CI3B 1K8WA 3HJYA 1S04A 2Z0TA 2EY4A 3D79A 2DP9A 2E5OA 2KKUA 1ZBOA 4CI1B 3LWPA 1ZL3A 2HVYA 2B78A 4Q1TA 3U28A 2RFKA 1IQ8A 3M6XA 2J5VA 1ZE2A
chains in the Genus database with same CATH topology
2ANEA 4CI3B 3M65A 4CI1B 4CI2B 1ZBOA 3LJCA 4TZ4C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ANE A;  4CI3 B;  3M65 A;  4CI1 B;  4CI2 B;  1ZBO A;  3LJC A;  4TZ4 C; 
#chains in the Genus database with same CATH topology
 1SQW A;  2ANE A;  3LDF A;  1R3F A;  3M4X A;  1T5Y A;  4CI2 B;  2P38 A;  1IT8 A;  3M6W A;  3HAX A;  4DMG A;  1Q7H A;  2AB4 A;  2J5T A;  3HJW A;  1WXW A;  3LWQ A;  1UOY A;  2FRX A;  1SGV A;  1WXX A;  2CX1 A;  3M6U A;  4TZ4 C;  2AS0 A;  1TE7 A;  1R3E A;  1ZE1 A;  1ZS7 A;  3UAI A;  3LWV A;  3M65 A;  3IUW A;  2CX0 A;  2Q07 A;  3LJC A;  1J2B A;  3MQK A;  3LWO A;  2APO A;  3C0K A;  1WK2 A;  1IT7 A;  2CWW A;  3M6V A;  3ZV0 C;  3LWR A;  3VSE A;  1XNE A;  2AUS A;  4CI3 B;  1K8W A;  3HJY A;  1S04 A;  2Z0T A;  2EY4 A;  3D79 A;  2DP9 A;  2E5O A;  2KKU A;  1ZBO A;  4CI1 B;  3LWP A;  1ZL3 A;  2HVY A;  2B78 A;  4Q1T A;  3U28 A;  2RFK A;  1IQ8 A;  3M6X A;  2J5V A;  1ZE2 A; 
#chains in the Genus database with same CATH homology
 2ANE A;  4CI3 B;  3M65 A;  4CI1 B;  4CI2 B;  1ZBO A;  3LJC A;  4TZ4 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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