1ZE1A

Conformational change of pseudouridine 55 synthase upon its association with rna substrate
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
308
structure length
308
Chain Sequence
MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPEEIENRIIPLEKCLEWLPRVVVHQESTKMILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRLLALAEAERNSSFLETLRKHERQRRVLTLRKVFQT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords tRNA pseudouridine synthase B
publication title Conformational change of pseudouridine 55 synthase upon its association with RNA substrate
pubmed doi rcsb
source organism Thermotoga maritima
total genus 77
structure length 308
sequence length 308
chains with identical sequence B, C, D
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2005-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01472 PUA PUA domain
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 1ze1A02
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1ze1A01
1K8WA 2CX0A 2EY4A 3LWVA 1KSVA 1QYUA 2AS0A 3LWOA 1WXWA 3LWPA 1IQ8A 3MQKA 4LABA 1XPIA 3LDFA 4DMGA 3U28A 2J5TA 2J5VA 3HAXA 3VSEA 1V9KA 2P38A 1R3EA 1IT8A 3HJWA 1PRZA 3HJYA 1R3FA 1SGVA 3C0KA 1ZL3A 2AUSA 2CWWA 1KSKA 2APOA 1Q7HA 1KSLA 1ZE2A 2ISTA 2AB4A 3LWQA 2RFKA 1WXXA 2B78A 1ZS7A 4Q1TA 3D79A 1J2BA 4LGTA 2HVYA 3LWRA 3DH3A 1IT7A 3UAIA 2I82A 1ZE1A 2Q07A 1SQWA 1V9FA 1T5YA 2CX1A
chains in the Genus database with same CATH superfamily
1XNEA 1QYUA 3LWOA 3MQKA 1XPIA 4DMGA 2J5VA 3VSEA 1WK2A 1R3FA 2KKUA 1ZL3A 1KSKA 4CI3B 1ZE2A 2ISTA 3LWQA 2B78A 3M65A 1J2BA 2HVYA 4LGTA 1IT7A 2ANEA 3IUWA 2AS0A 1IQ8A 3M6VA 4LABA 4CI1B 3HAXA 1SB7A 1R3EA 1SI7A 3C0KA 1SGVA 1TE7A 3LJCA 1WXXA 4Q1TA 2Q07A 1V9FA 1WXWA 2CX0A 2EY4A 3LWVA 4TZ4C 3LWPA 3M4XA 3M6WA 2P38A 1S04A 1IT8A 3HJYA 2AUSA 2E5OA 2APOA 1ZBOA 2Z0TA 2AB4A 2RFKA 1ZS7A 3ZV0C 3DH3A 2I82A 1ZE1A 1SQWA 1SZWA 2CX1A 1K8WA 1KSVA 4CI2B 3M6XA 3LDFA 1UOYA 2J5TA 3U28A 2DP9A 1V9KA 3HJWA 3M6UA 1PRZA 2CWWA 1Q7HA 1KSLA 1Z2ZA 3D79A 2FRXA 3LWRA 3UAIA 1T5YA
chains in the Genus database with same CATH topology
1K8WA 2CX0A 2EY4A 3LWVA 1KSVA 1QYUA 2AS0A 3LWOA 1WXWA 3LWPA 1IQ8A 3MQKA 4LABA 1XPIA 3LDFA 4DMGA 3U28A 2J5TA 2J5VA 3HAXA 3VSEA 1SB7A 1V9KA 2P38A 1R3EA 1IT8A 1SI7A 3HJWA 1PRZA 3HJYA 1R3FA 1SGVA 3C0KA 1ZL3A 2AUSA 2CWWA 1KSKA 2APOA 1Q7HA 1KSLA 1Z2ZA 1ZE2A 2ISTA 2AB4A 3LWQA 2RFKA 1WXXA 2B78A 1ZS7A 4Q1TA 3D79A 1J2BA 4LGTA 2HVYA 3LWRA 3DH3A 1IT7A 3UAIA 2I82A 1ZE1A 2Q07A 1SQWA 1V9FA 1SZWA 1T5YA 2CX1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K8W A;  2CX0 A;  2EY4 A;  3LWV A;  1KSV A;  1QYU A;  2AS0 A;  3LWO A;  1WXW A;  3LWP A;  1IQ8 A;  3MQK A;  4LAB A;  1XPI A;  3LDF A;  4DMG A;  3U28 A;  2J5T A;  2J5V A;  3HAX A;  3VSE A;  1V9K A;  2P38 A;  1R3E A;  1IT8 A;  3HJW A;  1PRZ A;  3HJY A;  1R3F A;  1SGV A;  3C0K A;  1ZL3 A;  2AUS A;  2CWW A;  1KSK A;  2APO A;  1Q7H A;  1KSL A;  1ZE2 A;  2IST A;  2AB4 A;  3LWQ A;  2RFK A;  1WXX A;  2B78 A;  1ZS7 A;  4Q1T A;  3D79 A;  1J2B A;  4LGT A;  2HVY A;  3LWR A;  3DH3 A;  1IT7 A;  3UAI A;  2I82 A;  1ZE1 A;  2Q07 A;  1SQW A;  1V9F A;  1T5Y A;  2CX1 A; 
#chains in the Genus database with same CATH topology
 1XNE A;  1QYU A;  3LWO A;  3MQK A;  1XPI A;  4DMG A;  2J5V A;  3VSE A;  1WK2 A;  1R3F A;  2KKU A;  1ZL3 A;  1KSK A;  4CI3 B;  1ZE2 A;  2IST A;  3LWQ A;  2B78 A;  3M65 A;  1J2B A;  2HVY A;  4LGT A;  1IT7 A;  2ANE A;  3IUW A;  2AS0 A;  1IQ8 A;  3M6V A;  4LAB A;  4CI1 B;  3HAX A;  1SB7 A;  1R3E A;  1SI7 A;  3C0K A;  1SGV A;  1TE7 A;  3LJC A;  1WXX A;  4Q1T A;  2Q07 A;  1V9F A;  1WXW A;  2CX0 A;  2EY4 A;  3LWV A;  4TZ4 C;  3LWP A;  3M4X A;  3M6W A;  2P38 A;  1S04 A;  1IT8 A;  3HJY A;  2AUS A;  2E5O A;  2APO A;  1ZBO A;  2Z0T A;  2AB4 A;  2RFK A;  1ZS7 A;  3ZV0 C;  3DH3 A;  2I82 A;  1ZE1 A;  1SQW A;  1SZW A;  2CX1 A;  1K8W A;  1KSV A;  4CI2 B;  3M6X A;  3LDF A;  1UOY A;  2J5T A;  3U28 A;  2DP9 A;  1V9K A;  3HJW A;  3M6U A;  1PRZ A;  2CWW A;  1Q7H A;  1KSL A;  1Z2Z A;  3D79 A;  2FRX A;  3LWR A;  3UAI A;  1T5Y A; 
#chains in the Genus database with same CATH homology
 1K8W A;  2CX0 A;  2EY4 A;  3LWV A;  1KSV A;  1QYU A;  2AS0 A;  3LWO A;  1WXW A;  3LWP A;  1IQ8 A;  3MQK A;  4LAB A;  1XPI A;  3LDF A;  4DMG A;  3U28 A;  2J5T A;  2J5V A;  3HAX A;  3VSE A;  1SB7 A;  1V9K A;  2P38 A;  1R3E A;  1IT8 A;  1SI7 A;  3HJW A;  1PRZ A;  3HJY A;  1R3F A;  1SGV A;  3C0K A;  1ZL3 A;  2AUS A;  2CWW A;  1KSK A;  2APO A;  1Q7H A;  1KSL A;  1Z2Z A;  1ZE2 A;  2IST A;  2AB4 A;  3LWQ A;  2RFK A;  1WXX A;  2B78 A;  1ZS7 A;  4Q1T A;  3D79 A;  1J2B A;  4LGT A;  2HVY A;  3LWR A;  3DH3 A;  1IT7 A;  3UAI A;  2I82 A;  1ZE1 A;  2Q07 A;  1SQW A;  1V9F A;  1SZW A;  1T5Y A;  2CX1 A; 
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