1ZM8A

Apo crystal structure of nuclease a from anabaena sp.
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
239
structure length
239
Chain Sequence
ISVHLLLGNPSGATPTKLTPDNYLMVKNQYALSYNNSKGTANWVAWQLNSSWLGNAERQDNFRPDKTLPAGWVRVTPSMYSGSGYARGHIAPSADRTKTTEDNAATFLMTNMMPQTPDNNRNTWGNLEDYCRELVSQGKELYIVAGPNGSLGKPLKGKVTVPKSTWKIVVVLDSPGSGLEGITANTRVIAVNIPNDPELNNDWRAYKVSVDELESLTGYDFLSNVSPNIQTSIESKVDN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Nuclease
publication title Structural Insights into the Mechanism of Nuclease A, a beta beta alpha Metal Nuclease from Anabaena.
pubmed doi rcsb
source organism Anabaena sp.
total genus 72
structure length 239
sequence length 239
ec nomenclature ec 3.1.30.-:
pdb deposition date 2005-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 1zm8A00
1G8TA 5GKCA 3NKMA 3NKPA 3ISMA 5DLTA 4GTXA 3NKQA 2XGRA 5DLVA 1ZM8A 4ZG7A 5HRTA 3WAVA 5DLWA 5GKPA 3S5BA 4A1NA 5IJSA 1QAEA 4B56A 4ZGAA 4QN0A 3NKRA 4E3YA 2XRGA 4QGOA 4ZG9A 5L0EA 4GTYA 5LIAA 4GTZA 4ZG6A 3WAYA 5L0BA 2XR9A 5LQQA 2XH3A 1QL0A 4QH0A 5KXAA 5IJQA 1SMNA 4GTWA 3WAXA 3NKNA 5INHA 3OWVA 3WAWA 5L0KA 3NKOA 2O3BA
chains in the Genus database with same CATH superfamily
1G8TA 5GKCA 3NKMA 3NKPA 3ISMA 5DLTA 4GTXA 3NKQA 2XGRA 5DLVA 1ZM8A 4ZG7A 5HRTA 3WAVA 5DLWA 5GKPA 3S5BA 4A1NA 5IJSA 1QAEA 4B56A 4ZGAA 4QN0A 3NKRA 4E3YA 2XRGA 4QGOA 4ZG9A 5L0EA 4GTYA 5LIAA 4GTZA 4ZG6A 3WAYA 5L0BA 2XR9A 5LQQA 2XH3A 1QL0A 4QH0A 5KXAA 5IJQA 1SMNA 4GTWA 3WAXA 3NKNA 5INHA 3OWVA 3WAWA 5L0KA 3NKOA 2O3BA
chains in the Genus database with same CATH topology
1G8TA 5GKCA 3NKMA 3NKPA 3ISMA 5DLTA 4GTXA 3NKQA 2XGRA 5DLVA 1ZM8A 4ZG7A 5HRTA 3WAVA 5DLWA 5GKPA 3S5BA 4A1NA 5IJSA 1QAEA 4B56A 4ZGAA 4QN0A 3NKRA 4E3YA 2XRGA 4QGOA 4ZG9A 5L0EA 4GTYA 5LIAA 4GTZA 4ZG6A 3WAYA 5L0BA 2XR9A 5LQQA 2XH3A 1QL0A 4QH0A 5KXAA 5IJQA 1SMNA 4GTWA 3WAXA 3NKNA 5INHA 3OWVA 3WAWA 5L0KA 3NKOA 2O3BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G8T A;  5GKC A;  3NKM A;  3NKP A;  3ISM A;  5DLT A;  4GTX A;  3NKQ A;  2XGR A;  5DLV A;  1ZM8 A;  4ZG7 A;  5HRT A;  3WAV A;  5DLW A;  5GKP A;  3S5B A;  4A1N A;  5IJS A;  1QAE A;  4B56 A;  4ZGA A;  4QN0 A;  3NKR A;  4E3Y A;  2XRG A;  4QGO A;  4ZG9 A;  5L0E A;  4GTY A;  5LIA A;  4GTZ A;  4ZG6 A;  3WAY A;  5L0B A;  2XR9 A;  5LQQ A;  2XH3 A;  1QL0 A;  4QH0 A;  5KXA A;  5IJQ A;  1SMN A;  4GTW A;  3WAX A;  3NKN A;  5INH A;  3OWV A;  3WAW A;  5L0K A;  3NKO A;  2O3B A; 
#chains in the Genus database with same CATH topology
 1G8T A;  5GKC A;  3NKM A;  3NKP A;  3ISM A;  5DLT A;  4GTX A;  3NKQ A;  2XGR A;  5DLV A;  1ZM8 A;  4ZG7 A;  5HRT A;  3WAV A;  5DLW A;  5GKP A;  3S5B A;  4A1N A;  5IJS A;  1QAE A;  4B56 A;  4ZGA A;  4QN0 A;  3NKR A;  4E3Y A;  2XRG A;  4QGO A;  4ZG9 A;  5L0E A;  4GTY A;  5LIA A;  4GTZ A;  4ZG6 A;  3WAY A;  5L0B A;  2XR9 A;  5LQQ A;  2XH3 A;  1QL0 A;  4QH0 A;  5KXA A;  5IJQ A;  1SMN A;  4GTW A;  3WAX A;  3NKN A;  5INH A;  3OWV A;  3WAW A;  5L0K A;  3NKO A;  2O3B A; 
#chains in the Genus database with same CATH homology
 1G8T A;  5GKC A;  3NKM A;  3NKP A;  3ISM A;  5DLT A;  4GTX A;  3NKQ A;  2XGR A;  5DLV A;  1ZM8 A;  4ZG7 A;  5HRT A;  3WAV A;  5DLW A;  5GKP A;  3S5B A;  4A1N A;  5IJS A;  1QAE A;  4B56 A;  4ZGA A;  4QN0 A;  3NKR A;  4E3Y A;  2XRG A;  4QGO A;  4ZG9 A;  5L0E A;  4GTY A;  5LIA A;  4GTZ A;  4ZG6 A;  3WAY A;  5L0B A;  2XR9 A;  5LQQ A;  2XH3 A;  1QL0 A;  4QH0 A;  5KXA A;  5IJQ A;  1SMN A;  4GTW A;  3WAX A;  3NKN A;  5INH A;  3OWV A;  3WAW A;  5L0K A;  3NKO A;  2O3B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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