1ZR5A

Crystal structure of the macro-domain of human core histone variant macroh2a1.2
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
189
structure length
189
Chain Sequence
DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation
molecule keywords H2AFY protein
publication title Splicing regulates NAD metabolite binding to histone macroH2A.
pubmed doi rcsb
source organism Homo sapiens
total genus 59
structure length 189
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 1zr5A00
3EWRA 3KQZA 4GUAA 4ABLA 5CB3A 4ETKA 4ZYQA 5AILA 2EEEA 4R7MA 3VFQA 4ESSA 4X2TA 1SPVA 5HOLA 5FSUA 3GQEA 4UMLA 3ETIA 4J5QA 1LCPA 3PEIA 1NJRA 2FXKA 3EW5A 2DX6A 4R6TA 3KZWA 5FSVA 3EKEA 3V2BA 4ZX8A 3EWOA 2J9AA 3KR4A 2FG1A 5CBMA 5CB5A 4KSIA 4ZY0A 4ZX9A 2X47A 3JRUA 3IIFA 1ZR3A 1YD9A 3GPOA 3EWPA 5FSYA 5FSXA 5D8NA 2FAVA 2EWBA 3GPGA 3Q71A 2LGRA 4ABKA 3SIHA 4R76A 2VRIA 1BLLE 1TY8A 1VHUA 2AFCA 4JLLA 4ZI6A 1HJZA 3Q6ZA 4JGKA 3KR5A 3JZTA 4TU0A 3EWQA 3H8EA 4ZY2A 3EJGA 2BFQA 4IQYA 1BPMA 5FSZA 4ZY1A 4K3NA 3IJ3A 3H8GA 3IIDA 3V45A 1TXZA 4J4ZA 5E3BA 3KQXA 3GQOA 4ETJA 3SIJA 4KYBA 3T8WA 2BFRA 2XD7A 4JCAA 2L8RA 4K0CA 5DUSA 5HIHA 3H8FA 4J5SA 4D86A 3EJFA 1LAPA 4JVVA 3SIGA 1BPNA 1GYTA 4GVWA 3GPQA 4GVVA 1LAMA 1ZR5A 3SIIA 2ACFA 4J5RA 1LANA 5CMSA
chains in the Genus database with same CATH superfamily
2JZDA 3EWRA 3KQZA 4GUAA 4ABLA 5CB3A 4ETKA 4ZYQA 5AILA 2EEEA 4R7MA 3VFQA 4ESSA 2KQVA 4X2TA 1SPVA 5HOLA 5FSUA 3GQEA 4UMLA 3ETIA 4J5QA 1LCPA 3PEIA 1NJRA 2FXKA 3EW5A 2DX6A 4R6TA 3KZWA 5FSVA 3EKEA 3V2BA 4ZX8A 3EWOA 2J9AA 3KR4A 2FG1A 2JZEA 5CBMA 5CB5A 4KSIA 4ZY0A 4ZX9A 2X47A 3JRUA 3IIFA 1ZR3A 1YD9A 3GPOA 3EWPA 5FSYA 5FSXA 5D8NA 2FAVA 2EWBA 3GPGA 3Q71A 2LGRA 4ABKA 2JZFA 3SIHA 4R76A 2VRIA 1BLLE 1TY8A 1VHUA 2AFCA 4JLLA 4ZI6A 2WCTA 1HJZA 3Q6ZA 4JGKA 3KR5A 3JZTA 4TU0A 3EWQA 3H8EA 4ZY2A 3EJGA 2BFQA 4IQYA 1BPMA 5FSZA 4ZY1A 4K3NA 3IJ3A 3H8GA 3IIDA 3V45A 1TXZA 4J4ZA 5E3BA 3KQXA 3GQOA 4ETJA 3SIJA 4KYBA 3T8WA 2BFRA 2XD7A 4JCAA 2L8RA 4K0CA 5DUSA 5HIHA 3H8FA 4J5SA 4D86A 3EJFA 1LAPA 4JVVA 3SIGA 1BPNA 1GYTA 2W2GA 4GVWA 3GPQA 4GVVA 1LAMA 1ZR5A 3SIIA 2ACFA 4J5RA 1LANA 5CMSA 2RNKA
chains in the Genus database with same CATH topology
3EWRA 3KQZA 4GUAA 4ABLA 5CB3A 4ETKA 4ZYQA 5AILA 2EEEA 4R7MA 3VFQA 4ESSA 4X2TA 1SPVA 5HOLA 5FSUA 3GQEA 4UMLA 3ETIA 4J5QA 1LCPA 3PEIA 1NJRA 2FXKA 3EW5A 2DX6A 4R6TA 3KZWA 5FSVA 3EKEA 3V2BA 4ZX8A 3EWOA 2J9AA 3KR4A 2FG1A 5CBMA 5CB5A 4KSIA 4ZY0A 4ZX9A 2X47A 3JRUA 3IIFA 1ZR3A 1YD9A 3GPOA 3EWPA 5FSYA 5FSXA 5D8NA 2FAVA 2EWBA 3GPGA 3Q71A 2LGRA 4ABKA 3SIHA 4R76A 2VRIA 1BLLE 1TY8A 1VHUA 2AFCA 4JLLA 4ZI6A 1HJZA 3Q6ZA 4JGKA 3KR5A 3JZTA 4TU0A 3EWQA 3H8EA 4ZY2A 3EJGA 2BFQA 4IQYA 1BPMA 5FSZA 4ZY1A 4K3NA 3IJ3A 3H8GA 3IIDA 3V45A 1TXZA 4J4ZA 5E3BA 3KQXA 3GQOA 4ETJA 3SIJA 4KYBA 3T8WA 2BFRA 2XD7A 4JCAA 2L8RA 4K0CA 5DUSA 5HIHA 3H8FA 4J5SA 4D86A 3EJFA 1LAPA 4JVVA 3SIGA 1BPNA 1GYTA 4GVWA 3GPQA 4GVVA 1LAMA 1ZR5A 3SIIA 2ACFA 4J5RA 1LANA 5CMSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EWR A;  3KQZ A;  4GUA A;  4ABL A;  5CB3 A;  4ETK A;  4ZYQ A;  5AIL A;  2EEE A;  4R7M A;  3VFQ A;  4ESS A;  4X2T A;  1SPV A;  5HOL A;  5FSU A;  3GQE A;  4UML A;  3ETI A;  4J5Q A;  1LCP A;  3PEI A;  1NJR A;  2FXK A;  3EW5 A;  2DX6 A;  4R6T A;  3KZW A;  5FSV A;  3EKE A;  3V2B A;  4ZX8 A;  3EWO A;  2J9A A;  3KR4 A;  2FG1 A;  5CBM A;  5CB5 A;  4KSI A;  4ZY0 A;  4ZX9 A;  2X47 A;  3JRU A;  3IIF A;  1ZR3 A;  1YD9 A;  3GPO A;  3EWP A;  5FSY A;  5FSX A;  5D8N A;  2FAV A;  2EWB A;  3GPG A;  3Q71 A;  2LGR A;  4ABK A;  3SIH A;  4R76 A;  2VRI A;  1BLL E;  1TY8 A;  1VHU A;  2AFC A;  4JLL A;  4ZI6 A;  1HJZ A;  3Q6Z A;  4JGK A;  3KR5 A;  3JZT A;  4TU0 A;  3EWQ A;  3H8E A;  4ZY2 A;  3EJG A;  2BFQ A;  4IQY A;  1BPM A;  5FSZ A;  4ZY1 A;  4K3N A;  3IJ3 A;  3H8G A;  3IID A;  3V45 A;  1TXZ A;  4J4Z A;  5E3B A;  3KQX A;  3GQO A;  4ETJ A;  3SIJ A;  4KYB A;  3T8W A;  2BFR A;  2XD7 A;  4JCA A;  2L8R A;  4K0C A;  5DUS A;  5HIH A;  3H8F A;  4J5S A;  4D86 A;  3EJF A;  1LAP A;  4JVV A;  3SIG A;  1BPN A;  1GYT A;  4GVW A;  3GPQ A;  4GVV A;  1LAM A;  1ZR5 A;  3SII A;  2ACF A;  4J5R A;  1LAN A;  5CMS A; 
#chains in the Genus database with same CATH topology
 2JZD A;  3EWR A;  3KQZ A;  4GUA A;  4ABL A;  5CB3 A;  4ETK A;  4ZYQ A;  5AIL A;  2EEE A;  4R7M A;  3VFQ A;  4ESS A;  2KQV A;  4X2T A;  1SPV A;  5HOL A;  5FSU A;  3GQE A;  4UML A;  3ETI A;  4J5Q A;  1LCP A;  3PEI A;  1NJR A;  2FXK A;  3EW5 A;  2DX6 A;  4R6T A;  3KZW A;  5FSV A;  3EKE A;  3V2B A;  4ZX8 A;  3EWO A;  2J9A A;  3KR4 A;  2FG1 A;  2JZE A;  5CBM A;  5CB5 A;  4KSI A;  4ZY0 A;  4ZX9 A;  2X47 A;  3JRU A;  3IIF A;  1ZR3 A;  1YD9 A;  3GPO A;  3EWP A;  5FSY A;  5FSX A;  5D8N A;  2FAV A;  2EWB A;  3GPG A;  3Q71 A;  2LGR A;  4ABK A;  2JZF A;  3SIH A;  4R76 A;  2VRI A;  1BLL E;  1TY8 A;  1VHU A;  2AFC A;  4JLL A;  4ZI6 A;  2WCT A;  1HJZ A;  3Q6Z A;  4JGK A;  3KR5 A;  3JZT A;  4TU0 A;  3EWQ A;  3H8E A;  4ZY2 A;  3EJG A;  2BFQ A;  4IQY A;  1BPM A;  5FSZ A;  4ZY1 A;  4K3N A;  3IJ3 A;  3H8G A;  3IID A;  3V45 A;  1TXZ A;  4J4Z A;  5E3B A;  3KQX A;  3GQO A;  4ETJ A;  3SIJ A;  4KYB A;  3T8W A;  2BFR A;  2XD7 A;  4JCA A;  2L8R A;  4K0C A;  5DUS A;  5HIH A;  3H8F A;  4J5S A;  4D86 A;  3EJF A;  1LAP A;  4JVV A;  3SIG A;  1BPN A;  1GYT A;  2W2G A;  4GVW A;  3GPQ A;  4GVV A;  1LAM A;  1ZR5 A;  3SII A;  2ACF A;  4J5R A;  1LAN A;  5CMS A;  2RNK A; 
#chains in the Genus database with same CATH homology
 3EWR A;  3KQZ A;  4GUA A;  4ABL A;  5CB3 A;  4ETK A;  4ZYQ A;  5AIL A;  2EEE A;  4R7M A;  3VFQ A;  4ESS A;  4X2T A;  1SPV A;  5HOL A;  5FSU A;  3GQE A;  4UML A;  3ETI A;  4J5Q A;  1LCP A;  3PEI A;  1NJR A;  2FXK A;  3EW5 A;  2DX6 A;  4R6T A;  3KZW A;  5FSV A;  3EKE A;  3V2B A;  4ZX8 A;  3EWO A;  2J9A A;  3KR4 A;  2FG1 A;  5CBM A;  5CB5 A;  4KSI A;  4ZY0 A;  4ZX9 A;  2X47 A;  3JRU A;  3IIF A;  1ZR3 A;  1YD9 A;  3GPO A;  3EWP A;  5FSY A;  5FSX A;  5D8N A;  2FAV A;  2EWB A;  3GPG A;  3Q71 A;  2LGR A;  4ABK A;  3SIH A;  4R76 A;  2VRI A;  1BLL E;  1TY8 A;  1VHU A;  2AFC A;  4JLL A;  4ZI6 A;  1HJZ A;  3Q6Z A;  4JGK A;  3KR5 A;  3JZT A;  4TU0 A;  3EWQ A;  3H8E A;  4ZY2 A;  3EJG A;  2BFQ A;  4IQY A;  1BPM A;  5FSZ A;  4ZY1 A;  4K3N A;  3IJ3 A;  3H8G A;  3IID A;  3V45 A;  1TXZ A;  4J4Z A;  5E3B A;  3KQX A;  3GQO A;  4ETJ A;  3SIJ A;  4KYB A;  3T8W A;  2BFR A;  2XD7 A;  4JCA A;  2L8R A;  4K0C A;  5DUS A;  5HIH A;  3H8F A;  4J5S A;  4D86 A;  3EJF A;  1LAP A;  4JVV A;  3SIG A;  1BPN A;  1GYT A;  4GVW A;  3GPQ A;  4GVV A;  1LAM A;  1ZR5 A;  3SII A;  2ACF A;  4J5R A;  1LAN A;  5CMS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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