1ZU3A

Crystal structure of mutant k8a of scorpion alpha-like neurotoxin bmk m1 from buthus martensii karsch
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
64
structure length
64
Chain Sequence
VRDAYIAAPHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIRVPGKCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Alpha-like neurotoxin BmK-I
publication title Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1
pubmed doi rcsb
source organism Mesobuthus martensii
total genus 15
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2005-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1zu3A00
1I6GA 4HHFA 1I2VA 1AHOA 1FH3A 2GL1A 2ATBA 2SN3A 1P0AA 2LY5A 2LY6A 5CY0A 1T7EA 2LKBA 4AB0A 1T1TA 1BK8A 1OMYA 1LQHA 1JZBA 1OZZA 3E7RL 4AEIA 2KGQA 1PE4A 1SNBA 2I61A 1NE5A 1VNAA 2KBHA 4AAZA 2N69A 2KSKA 2LJ7A 1ZFUA 2NY8X 2LT8A 1TI5A 2KBJA 2N66A 1CHZA 1T7AA 1B3CA 1JXCA 1MR4A 1AYJA 2LR3A 1BCGA 2YC1C 1ICAA 1L4VA 4V1DC 1B7DA 3E7UX 1DJTA 1NPIA 2E0HA 1ZVGA 1SEGA 2KBKA 2E3FA 1JZAA 4CQKA 2N2RA 1NRAA 2BRZA 1NH5A 1JKZA 1C56A 2LI7A 4KYPA 1ZVEA 1WT7A 1WWNA 2NY9X 4UJ0A 1N4NA 1P00A 1I2UA 1LQQA 1C55A 1DQ7A 1BMRA 2B3CA 2MZ0A 3PSMA 1SN1A 4HE7A 2E3GA 1T0ZA 1BRZA 1T7BA 1NRBA 5KK4A 2YEOA 1SN4A 2KPYA 2LJMA 1CN2A 1MYNA 1LQIA 1VNBA 2M8BB 1ZYVA 2KYQA 1GPSA 1ZUTA 1PX9A 2B68A 2YBRC 2ASCA 1GPTA 1WMTA 1ZYWA 2KJAA 1I6FA 1KV0A 2N2QA 1PTXA 1ZU3A 2A7TA
chains in the Genus database with same CATH superfamily
2G2KA 4UAEF 1I6GA 5AQTA 4HHFA 3KHWA 5AQSA 1HPMA 3R2VA 1I2VA 1AHOA 2V7ZA 1FH3A 5F1XA 1NGBA 2GMOA 2GL1A 1YUWA 2ATBA 2SN3A 1P0AA 5AQLA 1XRSB 3SF4D 3C7NA 1QQOA 2LY5A 2LY6A 5CY0A 3ATVA 1T7EA 2LKBA 4AB0A 2YIOA 5BN9A 1T1TA 1BK8A 5EX5A 5BPNA 5AQHA 1BA0A 3KC6A 5AQZA 1OMYA 1LQHA 5AQWA 3D2EB 3D2FA 2BUPA 1JZBA 3AY9A 5FPEA 5AQFA 4H5RA 5EXWA 3D2EA 2JDQD 1OZZA 2MBKA 3FZKA 3KP1A 3E7RL 5FPMA 4AEIA 3LDNA 4UAFE 3L4IA 5EY4A 2QWQA 1HX1A 2KGQA 1PE4A 2QWPA 2QWNA 1SNBA 1GPTA 2QWRA 5AQKA 2I61A 4IO8A 1NE5A 2K35A 3KOYA 3CW4A 1NGDA 3L56A 1POIA 1VNAA 2KBHA 5AQUA 2N69A 4AAZA 2KSKA 4FL9A 2LJ7A 1ZFUA 2NY8X 4H5TA 2LT8A 1BUPA 1KAXA 3JXUA 5AR0A 1TI5A 2KBJA 2N66A 3GDQA 4KBOA 1CHZA 5EVZA 1NGAA 4FSVA 2YBRC 3KVGA 2QWLA 1T7AA 3QFPA 5AQMA 3KP0A 1B3CA 3M3ZA 1JXCA 3HSCA 1S3XA 1MR4A 2YILA 1AYJA 2LR3A 3FZMA 1BCGA 2QWOA 2YC1C 1ICAA 2MN5A 1L4VA 4V1DC 1B7DA 3I33A 2QWMA 3E7UX 3FZHA 3LDPA 4H5VA 1DJTA 1NPIA 3KOWA 3CQXA 3BK3C 5BPLA 5AQQA 2E0HA 1ZVGA 1SEGA 2KBKA 5AQJA 2E3FA 1JZAA 3L6QA 4CQKA 1DKGD 2N2RA 5AQRA 1NRAA 5AQGA 3LDLA 1QQMA 2BRZA 1NH5A 5AQNA 1JKZA 3LDQA 3QMLA 1C56A 2LI7A 4KYPA 1ZVEA 3IUCA 1WT7A 3ATUA 1NGFA 1WWNA 2NY9X 4UJ0A 1N4NA 5AQIA 1P00A 5FPDA 1I2UA 5AQVA 1LQQA 1C55A 2KHOA 1DQ7A 2E2FA 1BMRA 3GL1A 4H5NA 2B3CA 3KOXA 3A8YA 5FPNA 1ATRA 2MZ0A 3PSMA 1NGHA 1SN1A 3C7NB 4HE7A 1NGIA 2E3GA 1T0ZA 4HWIA 1BRZA 3GKUA 1T7BA 5BN8A 4H5WA 1NRBA 5KK4A 5F0XA 3FZLA 2YEOA 1SN4A 2E8AA 3LDOA 1NGEA 5AQOA 2KPYA 2LJMA 1CN2A 1MYNA 2LN8A 4GNIA 3QI7A 1NGJA 1LQIA 1NGCA 2QXLA 1KAYA 1BA1A 1VNBA 5AQPA 1K8BA 3QFUA 2M8BB 5AQYA 1ZYVA 2KYQA 1ATSA 5F2RA 3D2FB 1GPSA 2YIPA 1ZUTA 5AQXA 1PX9A 2B68A 1KAZA 2ASCA 2D56A 2VY6A 1HJOA 1WMTA 1NGGA 1ZYWA 1UGLA 1I6FA 2E88A 1KV0A 2KJAA 2QW9A 1QQNA 1PTXA 2N2QA 1ZU3A 3FE1A 3FZFA 3KOZA 4UADE 2A7TA 5BPMA
chains in the Genus database with same CATH topology
1I6GA 4HHFA 1I2VA 1AHOA 1FH3A 2GL1A 2ATBA 2SN3A 1P0AA 2LY5A 2LY6A 5CY0A 1T7EA 2LKBA 4AB0A 1T1TA 1BK8A 1OMYA 1LQHA 1JZBA 1OZZA 3E7RL 4AEIA 2KGQA 1PE4A 1SNBA 2I61A 1NE5A 1VNAA 2KBHA 4AAZA 2N69A 2KSKA 2LJ7A 1ZFUA 2NY8X 2LT8A 1TI5A 2KBJA 2N66A 1CHZA 1T7AA 1B3CA 1JXCA 1MR4A 1AYJA 2LR3A 1BCGA 2YC1C 1ICAA 1L4VA 4V1DC 1B7DA 3E7UX 1DJTA 1NPIA 2E0HA 1ZVGA 1SEGA 2KBKA 2E3FA 1JZAA 4CQKA 2N2RA 1NRAA 2BRZA 1NH5A 1JKZA 1C56A 2LI7A 4KYPA 1ZVEA 1WT7A 1WWNA 2NY9X 4UJ0A 1N4NA 1P00A 1I2UA 1LQQA 1C55A 1DQ7A 1BMRA 2B3CA 2MZ0A 3PSMA 1SN1A 4HE7A 2E3GA 1T0ZA 1BRZA 1T7BA 1NRBA 5KK4A 2YEOA 1SN4A 2KPYA 2LJMA 1CN2A 1MYNA 1LQIA 1VNBA 2M8BB 1ZYVA 2KYQA 1GPSA 1ZUTA 1PX9A 2B68A 2YBRC 2ASCA 1GPTA 1WMTA 1ZYWA 2KJAA 1I6FA 1KV0A 2N2QA 1PTXA 1ZU3A 2A7TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I6G A;  4HHF A;  1I2V A;  1AHO A;  1FH3 A;  2GL1 A;  2ATB A;  2SN3 A;  1P0A A;  2LY5 A;  2LY6 A;  5CY0 A;  1T7E A;  2LKB A;  4AB0 A;  1T1T A;  1BK8 A;  1OMY A;  1LQH A;  1JZB A;  1OZZ A;  3E7R L;  4AEI A;  2KGQ A;  1PE4 A;  1SNB A;  2I61 A;  1NE5 A;  1VNA A;  2KBH A;  4AAZ A;  2N69 A;  2KSK A;  2LJ7 A;  1ZFU A;  2NY8 X;  2LT8 A;  1TI5 A;  2KBJ A;  2N66 A;  1CHZ A;  1T7A A;  1B3C A;  1JXC A;  1MR4 A;  1AYJ A;  2LR3 A;  1BCG A;  2YC1 C;  1ICA A;  1L4V A;  4V1D C;  1B7D A;  3E7U X;  1DJT A;  1NPI A;  2E0H A;  1ZVG A;  1SEG A;  2KBK A;  2E3F A;  1JZA A;  4CQK A;  2N2R A;  1NRA A;  2BRZ A;  1NH5 A;  1JKZ A;  1C56 A;  2LI7 A;  4KYP A;  1ZVE A;  1WT7 A;  1WWN A;  2NY9 X;  4UJ0 A;  1N4N A;  1P00 A;  1I2U A;  1LQQ A;  1C55 A;  1DQ7 A;  1BMR A;  2B3C A;  2MZ0 A;  3PSM A;  1SN1 A;  4HE7 A;  2E3G A;  1T0Z A;  1BRZ A;  1T7B A;  1NRB A;  5KK4 A;  2YEO A;  1SN4 A;  2KPY A;  2LJM A;  1CN2 A;  1MYN A;  1LQI A;  1VNB A;  2M8B B;  1ZYV A;  2KYQ A;  1GPS A;  1ZUT A;  1PX9 A;  2B68 A;  2YBR C;  2ASC A;  1GPT A;  1WMT A;  1ZYW A;  2KJA A;  1I6F A;  1KV0 A;  2N2Q A;  1PTX A;  1ZU3 A;  2A7T A; 
#chains in the Genus database with same CATH topology
 2G2K A;  4UAE F;  1I6G A;  5AQT A;  4HHF A;  3KHW A;  5AQS A;  1HPM A;  3R2V A;  1I2V A;  1AHO A;  2V7Z A;  1FH3 A;  5F1X A;  1NGB A;  2GMO A;  2GL1 A;  1YUW A;  2ATB A;  2SN3 A;  1P0A A;  5AQL A;  1XRS B;  3SF4 D;  3C7N A;  1QQO A;  2LY5 A;  2LY6 A;  5CY0 A;  3ATV A;  1T7E A;  2LKB A;  4AB0 A;  2YIO A;  5BN9 A;  1T1T A;  1BK8 A;  5EX5 A;  5BPN A;  5AQH A;  1BA0 A;  3KC6 A;  5AQZ A;  1OMY A;  1LQH A;  5AQW A;  3D2E B;  3D2F A;  2BUP A;  1JZB A;  3AY9 A;  5FPE A;  5AQF A;  4H5R A;  5EXW A;  3D2E A;  2JDQ D;  1OZZ A;  2MBK A;  3FZK A;  3KP1 A;  3E7R L;  5FPM A;  4AEI A;  3LDN A;  4UAF E;  3L4I A;  5EY4 A;  2QWQ A;  1HX1 A;  2KGQ A;  1PE4 A;  2QWP A;  2QWN A;  1SNB A;  1GPT A;  2QWR A;  5AQK A;  2I61 A;  4IO8 A;  1NE5 A;  2K35 A;  3KOY A;  3CW4 A;  1NGD A;  3L56 A;  1POI A;  1VNA A;  2KBH A;  5AQU A;  2N69 A;  4AAZ A;  2KSK A;  4FL9 A;  2LJ7 A;  1ZFU A;  2NY8 X;  4H5T A;  2LT8 A;  1BUP A;  1KAX A;  3JXU A;  5AR0 A;  1TI5 A;  2KBJ A;  2N66 A;  3GDQ A;  4KBO A;  1CHZ A;  5EVZ A;  1NGA A;  4FSV A;  2YBR C;  3KVG A;  2QWL A;  1T7A A;  3QFP A;  5AQM A;  3KP0 A;  1B3C A;  3M3Z A;  1JXC A;  3HSC A;  1S3X A;  1MR4 A;  2YIL A;  1AYJ A;  2LR3 A;  3FZM A;  1BCG A;  2QWO A;  2YC1 C;  1ICA A;  2MN5 A;  1L4V A;  4V1D C;  1B7D A;  3I33 A;  2QWM A;  3E7U X;  3FZH A;  3LDP A;  4H5V A;  1DJT A;  1NPI A;  3KOW A;  3CQX A;  3BK3 C;  5BPL A;  5AQQ A;  2E0H A;  1ZVG A;  1SEG A;  2KBK A;  5AQJ A;  2E3F A;  1JZA A;  3L6Q A;  4CQK A;  1DKG D;  2N2R A;  5AQR A;  1NRA A;  5AQG A;  3LDL A;  1QQM A;  2BRZ A;  1NH5 A;  5AQN A;  1JKZ A;  3LDQ A;  3QML A;  1C56 A;  2LI7 A;  4KYP A;  1ZVE A;  3IUC A;  1WT7 A;  3ATU A;  1NGF A;  1WWN A;  2NY9 X;  4UJ0 A;  1N4N A;  5AQI A;  1P00 A;  5FPD A;  1I2U A;  5AQV A;  1LQQ A;  1C55 A;  2KHO A;  1DQ7 A;  2E2F A;  1BMR A;  3GL1 A;  4H5N A;  2B3C A;  3KOX A;  3A8Y A;  5FPN A;  1ATR A;  2MZ0 A;  3PSM A;  1NGH A;  1SN1 A;  3C7N B;  4HE7 A;  1NGI A;  2E3G A;  1T0Z A;  4HWI A;  1BRZ A;  3GKU A;  1T7B A;  5BN8 A;  4H5W A;  1NRB A;  5KK4 A;  5F0X A;  3FZL A;  2YEO A;  1SN4 A;  2E8A A;  3LDO A;  1NGE A;  5AQO A;  2KPY A;  2LJM A;  1CN2 A;  1MYN A;  2LN8 A;  4GNI A;  3QI7 A;  1NGJ A;  1LQI A;  1NGC A;  2QXL A;  1KAY A;  1BA1 A;  1VNB A;  5AQP A;  1K8B A;  3QFU A;  2M8B B;  5AQY A;  1ZYV A;  2KYQ A;  1ATS A;  5F2R A;  3D2F B;  1GPS A;  2YIP A;  1ZUT A;  5AQX A;  1PX9 A;  2B68 A;  1KAZ A;  2ASC A;  2D56 A;  2VY6 A;  1HJO A;  1WMT A;  1NGG A;  1ZYW A;  1UGL A;  1I6F A;  2E88 A;  1KV0 A;  2KJA A;  2QW9 A;  1QQN A;  1PTX A;  2N2Q A;  1ZU3 A;  3FE1 A;  3FZF A;  3KOZ A;  4UAD E;  2A7T A;  5BPM A; 
#chains in the Genus database with same CATH homology
 1I6G A;  4HHF A;  1I2V A;  1AHO A;  1FH3 A;  2GL1 A;  2ATB A;  2SN3 A;  1P0A A;  2LY5 A;  2LY6 A;  5CY0 A;  1T7E A;  2LKB A;  4AB0 A;  1T1T A;  1BK8 A;  1OMY A;  1LQH A;  1JZB A;  1OZZ A;  3E7R L;  4AEI A;  2KGQ A;  1PE4 A;  1SNB A;  2I61 A;  1NE5 A;  1VNA A;  2KBH A;  4AAZ A;  2N69 A;  2KSK A;  2LJ7 A;  1ZFU A;  2NY8 X;  2LT8 A;  1TI5 A;  2KBJ A;  2N66 A;  1CHZ A;  1T7A A;  1B3C A;  1JXC A;  1MR4 A;  1AYJ A;  2LR3 A;  1BCG A;  2YC1 C;  1ICA A;  1L4V A;  4V1D C;  1B7D A;  3E7U X;  1DJT A;  1NPI A;  2E0H A;  1ZVG A;  1SEG A;  2KBK A;  2E3F A;  1JZA A;  4CQK A;  2N2R A;  1NRA A;  2BRZ A;  1NH5 A;  1JKZ A;  1C56 A;  2LI7 A;  4KYP A;  1ZVE A;  1WT7 A;  1WWN A;  2NY9 X;  4UJ0 A;  1N4N A;  1P00 A;  1I2U A;  1LQQ A;  1C55 A;  1DQ7 A;  1BMR A;  2B3C A;  2MZ0 A;  3PSM A;  1SN1 A;  4HE7 A;  2E3G A;  1T0Z A;  1BRZ A;  1T7B A;  1NRB A;  5KK4 A;  2YEO A;  1SN4 A;  2KPY A;  2LJM A;  1CN2 A;  1MYN A;  1LQI A;  1VNB A;  2M8B B;  1ZYV A;  2KYQ A;  1GPS A;  1ZUT A;  1PX9 A;  2B68 A;  2YBR C;  2ASC A;  1GPT A;  1WMT A;  1ZYW A;  2KJA A;  1I6F A;  1KV0 A;  2N2Q A;  1PTX A;  1ZU3 A;  2A7T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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