1ZZ0A

Crystal structure of a hdac-like protein with acetate bound
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
367
structure length
367
Chain Sequence
AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Histone deacetylase-like amidohydrolase
publication title Crystal structure of a bacterial class 2 histone deacetylase homologue
pubmed doi rcsb
source organism Alcaligenaceae bacterium
total genus 136
structure length 367
sequence length 367
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.-:
pdb deposition date 2005-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 1zz0A00
5EENA 4LXZA 5EF8A 5DC6A 3Q9EA 5G1BA 3MZ4A 4ZUMA 5D1BA 5IX0A 3F07A 5G0HA 1C3SA 5G11A 5G12A 5G10A 4ZUQA 1ZZ1A 4QA3A 2VQQA 4BZ6A 5G0JA 3F06A 1ZZ3A 5G1AA 5EFBD 5JI5A 5EEKA 4ZUNA 2VQMA 5EFJD 3MENA 3Q9CA 2VQOA 1C3PA 5A2SA 1T69A 5FCWA 3Q9BA 5BWZA 4QA2A 4ZURA 3ZNRA 5THSA 5DC8A 5G1CA 2VQVA 4BZ8A 5LI3A 4A69A 4BZ7A 3C10A 2GH6A 4CBYA 1T67A 4RN0A 3MZ7A 5EF7A 2VCGA 5FUEA 5G0YA 5EFGA 5IWGA 3SFFA 1VKGA 3C0YA 3Q9FA 3C0ZA 3MAXA 5G17A 4QA6A 4QA7A 5G0XA 5EEIA 5EFKB 2V5WA 4BKXB 3SFHA 5DC7A 1W22A 3MZ3A 4ZUPA 4BZ9A 4QA4A 4QA0A 5EFNA 1C3RA 5DC5A 5THVA 2VQJA 3EWFA 3RQDA 4LY1A 2VQWG 3ZNSA 5THUA 5G0GA 1ZZ0A 5D1DA 1T64A 4QA5A 3EZPA 3F0RA 5EFHA 3EZTA 5THTA 4RN2A 5EEMA 4ZUOA 5G13A 4CQFA 4QA1A 5ICNB 2V5XA 5EEFA 5G3WA 5D1CA 5G0IA 4CBTA 4RN1A 3EW8A 4BZ5A 3MZ6A
chains in the Genus database with same CATH superfamily
5EENA 1CEVA 1TBJA 4LXZA 5EF8A 3LP7A 5DC6A 5RLAA 1P8NA 3Q9EA 5G1BA 1WOGA 1HQFA 3MZ4A 4ZUMA 2AEBA 5D1BA 4IXVA 5IX0A 4FCIA 4Q3RA 1T4SA 1WVAA 3F07A 1ZPEA 5G0HA 1WVBA 3LHLA 4MYKA 1C3SA 4HWWA 1P8RA 4Q42A 3CEVA 3NIPA 4HZEA 5G11A 2PHOA 5CEVA 4FCKA 5G12A 4Q41A 4RHMA 1TBHA 4RHIA 3THEA 4Q3TA 1P8MA 5G10A 4ZUQA 3MMRA 1XFKA 1T4RA 5HJAA 1ZPGA 1ZZ1A 2VQQA 3KV2A 4QA3A 4BZ6A 5G0JA 2ZAVA 1T5FA 3F06A 4GSVA 1ZZ3A 4IU5A 1P8SA 5G1AA 5EFBD 5JI5A 5EEKA 4MYLA 2EIVA 3SL0A 4ZUNA 2VQMA 4IXUA 5EFJD 3MENA 3Q9CA 2VQOA 1C3PA 5A2SA 1T69A 5FCWA 3E8QA 4Q3UA 3E9BA 3Q9BA 5BWZA 4QA2A 4ZURA 3F80A 3ZNRA 5THSA 5DC8A 5G1CA 2VQVA 3TF3A 4BZ8A 4MYNA 1HQXA 1HQGA 4Q3QA 1T4TA 5LI3A 4A69A 4BZ7A 4IE3A 4GWCA 4RHQA 1TA1A 4IE1A 4RLAA 3C10A 4GSMA 4CEVA 1P8OA 2GH6A 4CBYA 1T67A 3GMZA 4RN0A 3MZ7A 5EF7A 2VCGA 3EW8A 5FUEA 3TH7A 3E6KA 4I06A 5G0YA 3PZLA 4MYFA 1HQHA 3LP4A 5EFGA 5IWGA 3THJA 3SFFA 1P8QA 1VKGA 3DJ8A 3C0YA 3Q9FA 1RLAA 3C0ZA 4ITYA 3MAXA 5G17A 4QA6A 4RHJA 4QA7A 5G0XA 5EEIA 5EFKB 2V5WA 4BKXB 3SFHA 2A0MA 4IU0A 5DC7A 3SL1A 1R1OA 4DZ4A 1W22A 3MZ3A 4ZUPA 5HJ9A 4G3HA 3NIOA 4BZ9A 2PHAA 4QA4A 3THHA 4GSZA 4QA0A 1GQ6A 1D3VA 1HQ5A 5EFNA 1C3RA 1GQ7A 1T5GA 5DC5A 5THVA 3M1RA 4IU1A 3RLAA 2VQJA 3MFVA 3EWFA 4MXRA 2EF4A 3RQDA 3E6VA 4LY1A 1TBLA 2VQWG 3ZNSA 5THUA 1WOHA 1P8PA 5G0GA 1ZZ0A 5D1DA 1T64A 3SKKA 4Q3PA 2CEVA 4QA5A 3EZPA 4Q40A 4IE2A 4IU4A 3GN0A 3F0RA 4HXQA 4Q3SA 5EFHA 3EZTA 3SJTA 5THTA 1T4PA 4RN2A 3NIQA 5EEMA 4ZUOA 3MFWA 4RHLA 5G13A 4CQFA 4QA1A 1WOIA 2RLAA 5ICNB 3E8ZA 2V5XA 5EEFA 4Q3RC 2EF5A 3MJLA 5G3WA 5D1CA 5G0IA 4GWDA 4CBTA 2PLLA 4RHKA 4RN1A 4Q3VA 1PQ3A 4BZ5A 3MZ6A
chains in the Genus database with same CATH topology
5EENA 4LXZA 5EF8A 5DC6A 3Q9EA 5G1BA 3MZ4A 4ZUMA 5D1BA 5IX0A 3F07A 5G0HA 1C3SA 5G11A 5G12A 5G10A 4ZUQA 1ZZ1A 4QA3A 2VQQA 4BZ6A 5G0JA 3F06A 1ZZ3A 5G1AA 5EFBD 5JI5A 5EEKA 4ZUNA 2VQMA 5EFJD 3MENA 3Q9CA 2VQOA 1C3PA 5A2SA 1T69A 5FCWA 3Q9BA 5BWZA 4QA2A 4ZURA 3ZNRA 5THSA 5DC8A 5G1CA 2VQVA 4BZ8A 5LI3A 4A69A 4BZ7A 3C10A 2GH6A 4CBYA 1T67A 4RN0A 3MZ7A 5EF7A 2VCGA 5FUEA 5G0YA 5EFGA 5IWGA 3SFFA 1VKGA 3C0YA 3Q9FA 3C0ZA 3MAXA 5G17A 4QA6A 4QA7A 5G0XA 5EEIA 5EFKB 2V5WA 4BKXB 3SFHA 5DC7A 1W22A 3MZ3A 4ZUPA 4BZ9A 4QA4A 4QA0A 5EFNA 1C3RA 5DC5A 5THVA 2VQJA 3EWFA 3RQDA 4LY1A 2VQWG 3ZNSA 5THUA 5G0GA 1ZZ0A 5D1DA 1T64A 4QA5A 3EZPA 3F0RA 5EFHA 3EZTA 5THTA 4RN2A 5EEMA 4ZUOA 5G13A 4CQFA 4QA1A 5ICNB 2V5XA 5EEFA 5G3WA 5D1CA 5G0IA 4CBTA 4RN1A 3EW8A 4BZ5A 3MZ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EEN A;  4LXZ A;  5EF8 A;  5DC6 A;  3Q9E A;  5G1B A;  3MZ4 A;  4ZUM A;  5D1B A;  5IX0 A;  3F07 A;  5G0H A;  1C3S A;  5G11 A;  5G12 A;  5G10 A;  4ZUQ A;  1ZZ1 A;  4QA3 A;  2VQQ A;  4BZ6 A;  5G0J A;  3F06 A;  1ZZ3 A;  5G1A A;  5EFB D;  5JI5 A;  5EEK A;  4ZUN A;  2VQM A;  5EFJ D;  3MEN A;  3Q9C A;  2VQO A;  1C3P A;  5A2S A;  1T69 A;  5FCW A;  3Q9B A;  5BWZ A;  4QA2 A;  4ZUR A;  3ZNR A;  5THS A;  5DC8 A;  5G1C A;  2VQV A;  4BZ8 A;  5LI3 A;  4A69 A;  4BZ7 A;  3C10 A;  2GH6 A;  4CBY A;  1T67 A;  4RN0 A;  3MZ7 A;  5EF7 A;  2VCG A;  5FUE A;  5G0Y A;  5EFG A;  5IWG A;  3SFF A;  1VKG A;  3C0Y A;  3Q9F A;  3C0Z A;  3MAX A;  5G17 A;  4QA6 A;  4QA7 A;  5G0X A;  5EEI A;  5EFK B;  2V5W A;  4BKX B;  3SFH A;  5DC7 A;  1W22 A;  3MZ3 A;  4ZUP A;  4BZ9 A;  4QA4 A;  4QA0 A;  5EFN A;  1C3R A;  5DC5 A;  5THV A;  2VQJ A;  3EWF A;  3RQD A;  4LY1 A;  2VQW G;  3ZNS A;  5THU A;  5G0G A;  1ZZ0 A;  5D1D A;  1T64 A;  4QA5 A;  3EZP A;  3F0R A;  5EFH A;  3EZT A;  5THT A;  4RN2 A;  5EEM A;  4ZUO A;  5G13 A;  4CQF A;  4QA1 A;  5ICN B;  2V5X A;  5EEF A;  5G3W A;  5D1C A;  5G0I A;  4CBT A;  4RN1 A;  3EW8 A;  4BZ5 A;  3MZ6 A; 
#chains in the Genus database with same CATH topology
 5EEN A;  1CEV A;  1TBJ A;  4LXZ A;  5EF8 A;  3LP7 A;  5DC6 A;  5RLA A;  1P8N A;  3Q9E A;  5G1B A;  1WOG A;  1HQF A;  3MZ4 A;  4ZUM A;  2AEB A;  5D1B A;  4IXV A;  5IX0 A;  4FCI A;  4Q3R A;  1T4S A;  1WVA A;  3F07 A;  1ZPE A;  5G0H A;  1WVB A;  3LHL A;  4MYK A;  1C3S A;  4HWW A;  1P8R A;  4Q42 A;  3CEV A;  3NIP A;  4HZE A;  5G11 A;  2PHO A;  5CEV A;  4FCK A;  5G12 A;  4Q41 A;  4RHM A;  1TBH A;  4RHI A;  3THE A;  4Q3T A;  1P8M A;  5G10 A;  4ZUQ A;  3MMR A;  1XFK A;  1T4R A;  5HJA A;  1ZPG A;  1ZZ1 A;  2VQQ A;  3KV2 A;  4QA3 A;  4BZ6 A;  5G0J A;  2ZAV A;  1T5F A;  3F06 A;  4GSV A;  1ZZ3 A;  4IU5 A;  1P8S A;  5G1A A;  5EFB D;  5JI5 A;  5EEK A;  4MYL A;  2EIV A;  3SL0 A;  4ZUN A;  2VQM A;  4IXU A;  5EFJ D;  3MEN A;  3Q9C A;  2VQO A;  1C3P A;  5A2S A;  1T69 A;  5FCW A;  3E8Q A;  4Q3U A;  3E9B A;  3Q9B A;  5BWZ A;  4QA2 A;  4ZUR A;  3F80 A;  3ZNR A;  5THS A;  5DC8 A;  5G1C A;  2VQV A;  3TF3 A;  4BZ8 A;  4MYN A;  1HQX A;  1HQG A;  4Q3Q A;  1T4T A;  5LI3 A;  4A69 A;  4BZ7 A;  4IE3 A;  4GWC A;  4RHQ A;  1TA1 A;  4IE1 A;  4RLA A;  3C10 A;  4GSM A;  4CEV A;  1P8O A;  2GH6 A;  4CBY A;  1T67 A;  3GMZ A;  4RN0 A;  3MZ7 A;  5EF7 A;  2VCG A;  3EW8 A;  5FUE A;  3TH7 A;  3E6K A;  4I06 A;  5G0Y A;  3PZL A;  4MYF A;  1HQH A;  3LP4 A;  5EFG A;  5IWG A;  3THJ A;  3SFF A;  1P8Q A;  1VKG A;  3DJ8 A;  3C0Y A;  3Q9F A;  1RLA A;  3C0Z A;  4ITY A;  3MAX A;  5G17 A;  4QA6 A;  4RHJ A;  4QA7 A;  5G0X A;  5EEI A;  5EFK B;  2V5W A;  4BKX B;  3SFH A;  2A0M A;  4IU0 A;  5DC7 A;  3SL1 A;  1R1O A;  4DZ4 A;  1W22 A;  3MZ3 A;  4ZUP A;  5HJ9 A;  4G3H A;  3NIO A;  4BZ9 A;  2PHA A;  4QA4 A;  3THH A;  4GSZ A;  4QA0 A;  1GQ6 A;  1D3V A;  1HQ5 A;  5EFN A;  1C3R A;  1GQ7 A;  1T5G A;  5DC5 A;  5THV A;  3M1R A;  4IU1 A;  3RLA A;  2VQJ A;  3MFV A;  3EWF A;  4MXR A;  2EF4 A;  3RQD A;  3E6V A;  4LY1 A;  1TBL A;  2VQW G;  3ZNS A;  5THU A;  1WOH A;  1P8P A;  5G0G A;  1ZZ0 A;  5D1D A;  1T64 A;  3SKK A;  4Q3P A;  2CEV A;  4QA5 A;  3EZP A;  4Q40 A;  4IE2 A;  4IU4 A;  3GN0 A;  3F0R A;  4HXQ A;  4Q3S A;  5EFH A;  3EZT A;  3SJT A;  5THT A;  1T4P A;  4RN2 A;  3NIQ A;  5EEM A;  4ZUO A;  3MFW A;  4RHL A;  5G13 A;  4CQF A;  4QA1 A;  1WOI A;  2RLA A;  5ICN B;  3E8Z A;  2V5X A;  5EEF A;  4Q3R C;  2EF5 A;  3MJL A;  5G3W A;  5D1C A;  5G0I A;  4GWD A;  4CBT A;  2PLL A;  4RHK A;  4RN1 A;  4Q3V A;  1PQ3 A;  4BZ5 A;  3MZ6 A; 
#chains in the Genus database with same CATH homology
 5EEN A;  4LXZ A;  5EF8 A;  5DC6 A;  3Q9E A;  5G1B A;  3MZ4 A;  4ZUM A;  5D1B A;  5IX0 A;  3F07 A;  5G0H A;  1C3S A;  5G11 A;  5G12 A;  5G10 A;  4ZUQ A;  1ZZ1 A;  4QA3 A;  2VQQ A;  4BZ6 A;  5G0J A;  3F06 A;  1ZZ3 A;  5G1A A;  5EFB D;  5JI5 A;  5EEK A;  4ZUN A;  2VQM A;  5EFJ D;  3MEN A;  3Q9C A;  2VQO A;  1C3P A;  5A2S A;  1T69 A;  5FCW A;  3Q9B A;  5BWZ A;  4QA2 A;  4ZUR A;  3ZNR A;  5THS A;  5DC8 A;  5G1C A;  2VQV A;  4BZ8 A;  5LI3 A;  4A69 A;  4BZ7 A;  3C10 A;  2GH6 A;  4CBY A;  1T67 A;  4RN0 A;  3MZ7 A;  5EF7 A;  2VCG A;  5FUE A;  5G0Y A;  5EFG A;  5IWG A;  3SFF A;  1VKG A;  3C0Y A;  3Q9F A;  3C0Z A;  3MAX A;  5G17 A;  4QA6 A;  4QA7 A;  5G0X A;  5EEI A;  5EFK B;  2V5W A;  4BKX B;  3SFH A;  5DC7 A;  1W22 A;  3MZ3 A;  4ZUP A;  4BZ9 A;  4QA4 A;  4QA0 A;  5EFN A;  1C3R A;  5DC5 A;  5THV A;  2VQJ A;  3EWF A;  3RQD A;  4LY1 A;  2VQW G;  3ZNS A;  5THU A;  5G0G A;  1ZZ0 A;  5D1D A;  1T64 A;  4QA5 A;  3EZP A;  3F0R A;  5EFH A;  3EZT A;  5THT A;  4RN2 A;  5EEM A;  4ZUO A;  5G13 A;  4CQF A;  4QA1 A;  5ICN B;  2V5X A;  5EEF A;  5G3W A;  5D1C A;  5G0I A;  4CBT A;  4RN1 A;  3EW8 A;  4BZ5 A;  3MZ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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