The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
196
|
Knots found |
|
sequence length |
508
|
structure length |
508
|
Chain Sequence |
KKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDLAPTMLDLLGLPQPKEMTGKSLIV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Isomerase
|
| molecule keywords |
PHOSPHOGLYCERATE MUTASE
|
| publication title |
Structure and mechanism of action of a novel phosphoglycerate mutase from Bacillus stearothermophilus.
pubmed doi rcsb |
| source organism |
Geobacillus stearothermophilus
|
| total genus |
196
|
| structure length |
508
|
| sequence length |
508
|
| other databases |
 KnotProt 2.0: S +31
|
| ec nomenclature |
ec
5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent). |
| pdb deposition date | 2000-03-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01676 | Metalloenzyme | Metalloenzyme superfamily |
| A | PF06415 | iPGM_N | BPG-independent PGAM N-terminus (iPGM_N) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alkaline Phosphatase, subunit A | Alkaline Phosphatase, subunit A | ||
| Alpha Beta | 3-Layer(aba) Sandwich | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain | BPG-independent phosphoglycerate mutase, domain B |
#chains in the Genus database with same CATH superfamily 4MY4 A; 1AJA A; 3BDF A; 4LR2 A; 4UPH A; 1KH7 A; 3BDH A; 3TG0 A; 4QAX A; 1ZEF A; 3DYC A; 1E1Z P; 3M8Y A; 2W5T A; 4GTZ A; 2GA3 A; 2W5Q A; 4GTW A; 3WAW A; 1O99 A; 5LIA A; 2XR9 A; 3B5Q A; 1EW8 A; 4UPK A; 2RH6 A; 1EI6 A; 3UN3 A; 1E33 P; 1E2S P; 3TX0 A; 2W8D A; 4GTX A; 4UPL A; 1ED9 A; 3KD8 A; 2X98 A; 3ED4 A; 1ANI A; 4UOO A; 4LRF A; 2G9Y A; 2W5X A; 5LQQ A; 2IUC B; 3MK0 A; 4ZG7 A; 5GRR A; 3T00 A; 4FDJ A; 1EW9 A; 1N2K A; 5EGH A; 1Y7A A; 2IUC A; 3IDD A; 1KH5 A; 4LRD A; 3IGZ B; 2W5S A; 1FSU A; 3SZZ A; 1AJC A; 5IJQ A; 2IFY A; 1ALK A; 1ZEB A; 1ED8 A; 1B8J A; 1ALH A; 3LXQ A; 5INH A; 4B56 A; 4ZG6 A; 4CXK A; 1E3C P; 4MIV A; 4ZG9 A; 3MK2 A; 1KHN A; 1ALJ A; 4UOR A; 1Y6V A; 3UO0 A; 4GTY A; 5DLT A; 1P49 A; 5GOV A; 5AJ9 A; 4ZGA A; 1EW2 A; 3T02 A; 1K7H A; 1EQJ A; 3UN5 A; 5IJS A; 3WAV A; 3M8W A; 4TN0 A; 3T01 A; 5C66 A; 3NKR A; 5HRT A; 5DLW A; 3NVL A; 3WBH A; 5K4P A; 4CXS A; 3IGY B; 5DLV A; 3SZY A; 4LR9 A; 1ALI A; 4N7T A; 2ZKT A; 3WAY A; 3M7V A; 3OT9 A; 4CYS A; 2D1G A; 1URB A; 4NWJ A; 5L0B A; 1HQA A; 4LRC A; 1AJD A; 2GSO A; 2XRG A; 3MK1 A; 4UOP A; 5KXA A; 5LRM A; 4YR1 A; 1SHQ A; 2GSN A; 2GLQ A; 4KJD A; 5L0K A; 3BDG A; 3A52 A; 4KJG A; 4LRE A; 4KAY A; 3UNY A; 1KH4 A; 1HJK A; 1ANJ A; 2W5R A; 4MHX A; 4KM4 A; 4LRA A; 5TJ3 A; 1ELY A; 2ANH A; 4LRB A; 3UN2 A; 4LQY A; 3M8Z A; 1KHL A; 3NKO A; 2W5W A; 1EJJ A; 2W8S A; 3NKM A; 2VQR A; 4CXU A; 1AJB A; 3NKQ A; 3E2D A; 1KHJ A; 2W5V A; 1HDH A; 3WAX A; 2GSU A; 3TWZ A; 1ELZ A; 4LR8 A; 1SHN A; 5LRN A; 3BDG B; 3DPC A; 1N2L A; 3CMR A; 4FDI A; 1O98 A; 3NKN A; 1KH9 A; 5EGE A; 1ELX A; 4UPI A; 1URA A; 1ZED A; 3NKP A; 4KAV A; 3Q3Q A; 1KHK A; 4LR7 A; 1AUK A; 4NWX A; 4CYR A; 2QZU A; 5L0E A; #chains in the Genus database with same CATH topology 4MY4 A; 1AJA A; 3BDF A; 4LR2 A; 4UPH A; 1KH7 A; 3BDH A; 3TG0 A; 4QAX A; 1ZEF A; 3DYC A; 1E1Z P; 3M8Y A; 2W5T A; 4GTZ A; 2GA3 A; 2W5Q A; 4GTW A; 3WAW A; 1O99 A; 5LIA A; 2XR9 A; 3B5Q A; 1EW8 A; 4UPK A; 2RH6 A; 1EI6 A; 3UN3 A; 1E33 P; 1E2S P; 3TX0 A; 2W8D A; 4GTX A; 4UPL A; 1ED9 A; 3KD8 A; 2X98 A; 3ED4 A; 1ANI A; 4UOO A; 4LRF A; 2G9Y A; 2W5X A; 5LQQ A; 2IUC B; 3MK0 A; 4ZG7 A; 5GRR A; 3T00 A; 4FDJ A; 1EW9 A; 1N2K A; 5EGH A; 1Y7A A; 2IUC A; 3IDD A; 1KH5 A; 4LRD A; 3IGZ B; 2W5S A; 1FSU A; 3SZZ A; 1AJC A; 5IJQ A; 2IFY A; 1ALK A; 1ZEB A; 1ED8 A; 1B8J A; 1ALH A; 3LXQ A; 5INH A; 4B56 A; 4ZG6 A; 4CXK A; 1E3C P; 4MIV A; 4ZG9 A; 3MK2 A; 1KHN A; 1ALJ A; 4UOR A; 1Y6V A; 3UO0 A; 4GTY A; 5DLT A; 1P49 A; 5GOV A; 5AJ9 A; 4ZGA A; 1EW2 A; 3T02 A; 1K7H A; 1EQJ A; 3UN5 A; 5IJS A; 3WAV A; 3M8W A; 4TN0 A; 3T01 A; 5C66 A; 3NKR A; 5HRT A; 5DLW A; 3NVL A; 3WBH A; 5K4P A; 4CXS A; 3IGY B; 5DLV A; 3SZY A; 4LR9 A; 1ALI A; 4N7T A; 2ZKT A; 3WAY A; 3M7V A; 3OT9 A; 4CYS A; 2D1G A; 1URB A; 4NWJ A; 5L0B A; 1HQA A; 4LRC A; 1AJD A; 2GSO A; 2XRG A; 3MK1 A; 4UOP A; 5KXA A; 5LRM A; 4YR1 A; 1SHQ A; 2GSN A; 2GLQ A; 4KJD A; 5L0K A; 3BDG A; 3A52 A; 4KJG A; 4LRE A; 4KAY A; 3UNY A; 1KH4 A; 1HJK A; 1ANJ A; 2W5R A; 4MHX A; 4KM4 A; 4LRA A; 5TJ3 A; 1ELY A; 2ANH A; 4LRB A; 3UN2 A; 4LQY A; 3M8Z A; 1KHL A; 3NKO A; 2W5W A; 1EJJ A; 2W8S A; 3NKM A; 2VQR A; 4CXU A; 1AJB A; 3NKQ A; 3E2D A; 1KHJ A; 2W5V A; 1HDH A; 3WAX A; 2GSU A; 3TWZ A; 1ELZ A; 4LR8 A; 1SHN A; 5LRN A; 3BDG B; 3DPC A; 1N2L A; 3CMR A; 4FDI A; 1O98 A; 3NKN A; 1KH9 A; 5EGE A; 1ELX A; 4UPI A; 1URA A; 1ZED A; 3NKP A; 4KAV A; 3Q3Q A; 1KHK A; 4LR7 A; 1AUK A; 4NWX A; 4CYR A; 2QZU A; 5L0E A; #chains in the Genus database with same CATH homology 4MY4 A; 1AJA A; 3BDF A; 4LR2 A; 4UPH A; 1KH7 A; 3BDH A; 3TG0 A; 4QAX A; 1ZEF A; 3DYC A; 1E1Z P; 3M8Y A; 2W5T A; 4GTZ A; 2GA3 A; 2W5Q A; 4GTW A; 3WAW A; 1O99 A; 5LIA A; 2XR9 A; 3B5Q A; 1EW8 A; 4UPK A; 2RH6 A; 1EI6 A; 3UN3 A; 1E33 P; 1E2S P; 3TX0 A; 2W8D A; 4GTX A; 4UPL A; 1ED9 A; 3KD8 A; 2X98 A; 3ED4 A; 1ANI A; 4UOO A; 4LRF A; 2G9Y A; 2W5X A; 5LQQ A; 2IUC B; 3MK0 A; 4ZG7 A; 5GRR A; 3T00 A; 4FDJ A; 1EW9 A; 1N2K A; 5EGH A; 1Y7A A; 2IUC A; 3IDD A; 1KH5 A; 4LRD A; 3IGZ B; 2W5S A; 1FSU A; 3SZZ A; 1AJC A; 5IJQ A; 2IFY A; 1ALK A; 1ZEB A; 1ED8 A; 1B8J A; 1ALH A; 3LXQ A; 5INH A; 4B56 A; 4ZG6 A; 4CXK A; 1E3C P; 4MIV A; 4ZG9 A; 3MK2 A; 1KHN A; 1ALJ A; 4UOR A; 1Y6V A; 3UO0 A; 4GTY A; 5DLT A; 1P49 A; 5GOV A; 5AJ9 A; 4ZGA A; 1EW2 A; 3T02 A; 1K7H A; 1EQJ A; 3UN5 A; 5IJS A; 3WAV A; 3M8W A; 4TN0 A; 3T01 A; 5C66 A; 3NKR A; 5HRT A; 5DLW A; 3NVL A; 3WBH A; 5K4P A; 4CXS A; 3IGY B; 5DLV A; 3SZY A; 4LR9 A; 1ALI A; 4N7T A; 2ZKT A; 3WAY A; 3M7V A; 3OT9 A; 4CYS A; 2D1G A; 1URB A; 4NWJ A; 5L0B A; 1HQA A; 4LRC A; 1AJD A; 2GSO A; 2XRG A; 3MK1 A; 4UOP A; 5KXA A; 5LRM A; 4YR1 A; 1SHQ A; 2GSN A; 2GLQ A; 4KJD A; 5L0K A; 3BDG A; 3A52 A; 4KJG A; 4LRE A; 4KAY A; 3UNY A; 1KH4 A; 1HJK A; 1ANJ A; 2W5R A; 4MHX A; 4KM4 A; 4LRA A; 5TJ3 A; 1ELY A; 2ANH A; 4LRB A; 3UN2 A; 4LQY A; 3M8Z A; 1KHL A; 3NKO A; 2W5W A; 1EJJ A; 2W8S A; 3NKM A; 2VQR A; 4CXU A; 1AJB A; 3NKQ A; 3E2D A; 1KHJ A; 2W5V A; 1HDH A; 3WAX A; 2GSU A; 3TWZ A; 1ELZ A; 4LR8 A; 1SHN A; 5LRN A; 3BDG B; 3DPC A; 1N2L A; 3CMR A; 4FDI A; 1O98 A; 3NKN A; 1KH9 A; 5EGE A; 1ELX A; 4UPI A; 1URA A; 1ZED A; 3NKP A; 4KAV A; 3Q3Q A; 1KHK A; 4LR7 A; 1AUK A; 4NWX A; 4CYR A; 2QZU A; 5L0E A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
