1EQJA

Crystal structure of phosphoglycerate mutase from bacillus stearothermophilus complexed with 2-phosphoglycerate
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
Knots found
sequence length
508
structure length
508
Chain Sequence
KKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDLAPTMLDLLGLPQPKEMTGKSLIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords PHOSPHOGLYCERATE MUTASE
publication title Mechanism of catalysis of the cofactor-independent phosphoglycerate mutase from Bacillus stearothermophilus. Crystal structure of the complex with 2-phosphoglycerate.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 192
structure length 508
sequence length 508
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2000-04-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1eqjA02
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 1eqjA01
5LQQA 4CXUA 2IUCA 3NKPA 1AJAA 4UPLA 5L0EA 1ZEBA 1EI6A 4KM4A 1KH4A 4LRBA 4GTXA 1KH5A 3M8WA 4UOPA 5HRTA 1SHNA 3IGZB 1AUKA 5LIAA 1HDHA 2W5VA 3MK1A 3NKQA 4LR8A 2XR9A 4QAXA 4KJGA 3NKMA 3E2DA 2W5WA 1N2LA 5EGHA 4KAVA 3IDDA 2GA3A 1KHNA 3LXQA 3NKRA 3NKNA 5IJQA 1ELZA 1K7HA 2VQRA 3WAYA 1EQJA 4UPHA 4UOOA 3UO0A 3NVLA 4LR9A 5GRRA 1URAA 1P49A 4NWJA 1ANJA 4FDIA 5TJ3A 5LRMA 1URBA 1KH7A 3BDGB 5EGEA 4GTYA 4LRDA 1ZEDA 1HJKA 1ALKA 2ANHA 1ED8A 5C66A 5GOVA 3WBHA 1AJBA 1KHJA 2D1GA 1SHQA 1ED9A 4CYRA 1KHKA 4KJDA 1O99A 3UNYA 1E33P 1FSUA 3BDFA 3SZZA 1B8JA 3CMRA 4GTZA 1KHLA 3MK0A 3IGYB 4ZG6A 3MK2A 2IUCB 3T00A 4GTWA 3DPCA 2GSUA 1AJDA 2W5XA 3M8YA 5KXAA 4B56A 2RH6A 5INHA 2W8SA 5L0KA 1ALHA 3KD8A 4LRFA 4UPIA 5DLTA 2W8DA 4CXSA 2IFYA 1N2KA 2XRGA 4LREA 4LQYA 3SZYA 3UN5A 1ALJA 1ANIA 2G9YA 3WAVA 3BDHA 2W5SA 4ZGAA 4KAYA 3BDGA 1ELXA 1ZEFA 1EJJA 4CXKA 4ZG9A 5DLVA 1HQAA 1E1ZP 1EW2A 1Y6VA 3Q3QA 4LRAA 3TWZA 4YR1A 5L0BA 1O98A 4LR7A 2ZKTA 2QZUA 3DYCA 1Y7AA 3B5QA 3M8ZA 1AJCA 4MIVA 1KH9A 4UPKA 4CYSA 4MHXA 3UN3A 5IJSA 2GSNA 2W5QA 1EW9A 2W5TA 4FDJA 2GSOA 5AJ9A 5LRNA 2GLQA 3WAWA 3NKOA 3WAXA 1E3CP 3T01A 4TN0A 3TX0A 4ZG7A 1EW8A 5K4PA 2X98A 1ELYA 5DLWA 1ALIA 3A52A 4NWXA 3TG0A 4MY4A 2W5RA 3ED4A 4N7TA 3M7VA 3UN2A 1E2SP 3T02A 3OT9A 4UORA 4LR2A 4LRCA
chains in the Genus database with same CATH superfamily
5LQQA 4CXUA 2IUCA 3NKPA 1AJAA 4UPLA 5L0EA 1ZEBA 1EI6A 4KM4A 1KH4A 4LRBA 4GTXA 1KH5A 3M8WA 4UOPA 5HRTA 1SHNA 3IGZB 1AUKA 5LIAA 1HDHA 2W5VA 3MK1A 3NKQA 4LR8A 2XR9A 4QAXA 4KJGA 3NKMA 3E2DA 2W5WA 1N2LA 5EGHA 4KAVA 3IDDA 2GA3A 1KHNA 3LXQA 3NKRA 3NKNA 5IJQA 1ELZA 1K7HA 2VQRA 3WAYA 1EQJA 4UPHA 4UOOA 3UO0A 3NVLA 4LR9A 5GRRA 1URAA 1P49A 4NWJA 1ANJA 4FDIA 5TJ3A 5LRMA 1URBA 1KH7A 3BDGB 5EGEA 4GTYA 4LRDA 1ZEDA 1HJKA 1ALKA 2ANHA 1ED8A 5C66A 5GOVA 3WBHA 1AJBA 1KHJA 2D1GA 1SHQA 1ED9A 4CYRA 1KHKA 4KJDA 1O99A 3UNYA 1E33P 1FSUA 3BDFA 3SZZA 1B8JA 3CMRA 4GTZA 1KHLA 3MK0A 3IGYB 4ZG6A 3MK2A 2IUCB 3T00A 4GTWA 3DPCA 2GSUA 1AJDA 2W5XA 3M8YA 5KXAA 4B56A 2RH6A 5INHA 2W8SA 5L0KA 1ALHA 3KD8A 4LRFA 4UPIA 5DLTA 2W8DA 4CXSA 2IFYA 1N2KA 2XRGA 4LREA 4LQYA 3SZYA 3UN5A 1ALJA 1ANIA 2G9YA 3WAVA 3BDHA 2W5SA 4ZGAA 4KAYA 3BDGA 1ELXA 1ZEFA 1EJJA 4CXKA 4ZG9A 5DLVA 1HQAA 1E1ZP 1EW2A 1Y6VA 3Q3QA 4LRAA 3TWZA 4YR1A 5L0BA 1O98A 4LR7A 2ZKTA 2QZUA 3DYCA 1Y7AA 3B5QA 3M8ZA 1AJCA 4MIVA 1KH9A 4UPKA 4CYSA 4MHXA 3UN3A 5IJSA 2GSNA 2W5QA 1EW9A 2W5TA 4FDJA 2GSOA 5AJ9A 5LRNA 2GLQA 3WAWA 3NKOA 3WAXA 1E3CP 3T01A 4TN0A 3TX0A 4ZG7A 1EW8A 5K4PA 2X98A 1ELYA 5DLWA 1ALIA 3A52A 4NWXA 3TG0A 4MY4A 2W5RA 3ED4A 4N7TA 3M7VA 3UN2A 1E2SP 3T02A 3OT9A 4UORA 4LR2A 4LRCA
chains in the Genus database with same CATH topology
5LQQA 4CXUA 2IUCA 3NKPA 1AJAA 4UPLA 5L0EA 1ZEBA 1EI6A 4KM4A 1KH4A 4LRBA 4GTXA 1KH5A 3M8WA 4UOPA 5HRTA 1SHNA 3IGZB 1AUKA 5LIAA 1HDHA 2W5VA 3MK1A 3NKQA 4LR8A 2XR9A 4QAXA 4KJGA 3NKMA 3E2DA 2W5WA 1N2LA 5EGHA 4KAVA 3IDDA 2GA3A 1KHNA 3LXQA 3NKRA 3NKNA 5IJQA 1ELZA 1K7HA 2VQRA 3WAYA 1EQJA 4UPHA 4UOOA 3UO0A 3NVLA 4LR9A 5GRRA 1URAA 1P49A 4NWJA 1ANJA 4FDIA 5TJ3A 5LRMA 1URBA 1KH7A 3BDGB 5EGEA 4GTYA 4LRDA 1ZEDA 1HJKA 1ALKA 2ANHA 1ED8A 5C66A 5GOVA 3WBHA 1AJBA 1KHJA 2D1GA 1SHQA 1ED9A 4CYRA 1KHKA 4KJDA 1O99A 3UNYA 1E33P 1FSUA 3BDFA 3SZZA 1B8JA 3CMRA 4GTZA 1KHLA 3MK0A 3IGYB 4ZG6A 3MK2A 2IUCB 3T00A 4GTWA 3DPCA 2GSUA 1AJDA 2W5XA 3M8YA 5KXAA 4B56A 2RH6A 5INHA 2W8SA 5L0KA 1ALHA 3KD8A 4LRFA 4UPIA 5DLTA 2W8DA 4CXSA 2IFYA 1N2KA 2XRGA 4LREA 4LQYA 3SZYA 3UN5A 1ALJA 1ANIA 2G9YA 3WAVA 3BDHA 2W5SA 4ZGAA 4KAYA 3BDGA 1ELXA 1ZEFA 1EJJA 4CXKA 4ZG9A 5DLVA 1HQAA 1E1ZP 1EW2A 1Y6VA 3Q3QA 4LRAA 3TWZA 4YR1A 5L0BA 1O98A 4LR7A 2ZKTA 2QZUA 3DYCA 1Y7AA 3B5QA 3M8ZA 1AJCA 4MIVA 1KH9A 4UPKA 4CYSA 4MHXA 3UN3A 5IJSA 2GSNA 2W5QA 1EW9A 2W5TA 4FDJA 2GSOA 5AJ9A 5LRNA 2GLQA 3WAWA 3NKOA 3WAXA 1E3CP 3T01A 4TN0A 3TX0A 4ZG7A 1EW8A 5K4PA 2X98A 1ELYA 5DLWA 1ALIA 3A52A 4NWXA 3TG0A 4MY4A 2W5RA 3ED4A 4N7TA 3M7VA 3UN2A 1E2SP 3T02A 3OT9A 4UORA 4LR2A 4LRCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LQQ A;  4CXU A;  2IUC A;  3NKP A;  1AJA A;  4UPL A;  5L0E A;  1ZEB A;  1EI6 A;  4KM4 A;  1KH4 A;  4LRB A;  4GTX A;  1KH5 A;  3M8W A;  4UOP A;  5HRT A;  1SHN A;  3IGZ B;  1AUK A;  5LIA A;  1HDH A;  2W5V A;  3MK1 A;  3NKQ A;  4LR8 A;  2XR9 A;  4QAX A;  4KJG A;  3NKM A;  3E2D A;  2W5W A;  1N2L A;  5EGH A;  4KAV A;  3IDD A;  2GA3 A;  1KHN A;  3LXQ A;  3NKR A;  3NKN A;  5IJQ A;  1ELZ A;  1K7H A;  2VQR A;  3WAY A;  1EQJ A;  4UPH A;  4UOO A;  3UO0 A;  3NVL A;  4LR9 A;  5GRR A;  1URA A;  1P49 A;  4NWJ A;  1ANJ A;  4FDI A;  5TJ3 A;  5LRM A;  1URB A;  1KH7 A;  3BDG B;  5EGE A;  4GTY A;  4LRD A;  1ZED A;  1HJK A;  1ALK A;  2ANH A;  1ED8 A;  5C66 A;  5GOV A;  3WBH A;  1AJB A;  1KHJ A;  2D1G A;  1SHQ A;  1ED9 A;  4CYR A;  1KHK A;  4KJD A;  1O99 A;  3UNY A;  1E33 P;  1FSU A;  3BDF A;  3SZZ A;  1B8J A;  3CMR A;  4GTZ A;  1KHL A;  3MK0 A;  3IGY B;  4ZG6 A;  3MK2 A;  2IUC B;  3T00 A;  4GTW A;  3DPC A;  2GSU A;  1AJD A;  2W5X A;  3M8Y A;  5KXA A;  4B56 A;  2RH6 A;  5INH A;  2W8S A;  5L0K A;  1ALH A;  3KD8 A;  4LRF A;  4UPI A;  5DLT A;  2W8D A;  4CXS A;  2IFY A;  1N2K A;  2XRG A;  4LRE A;  4LQY A;  3SZY A;  3UN5 A;  1ALJ A;  1ANI A;  2G9Y A;  3WAV A;  3BDH A;  2W5S A;  4ZGA A;  4KAY A;  3BDG A;  1ELX A;  1ZEF A;  1EJJ A;  4CXK A;  4ZG9 A;  5DLV A;  1HQA A;  1E1Z P;  1EW2 A;  1Y6V A;  3Q3Q A;  4LRA A;  3TWZ A;  4YR1 A;  5L0B A;  1O98 A;  4LR7 A;  2ZKT A;  2QZU A;  3DYC A;  1Y7A A;  3B5Q A;  3M8Z A;  1AJC A;  4MIV A;  1KH9 A;  4UPK A;  4CYS A;  4MHX A;  3UN3 A;  5IJS A;  2GSN A;  2W5Q A;  1EW9 A;  2W5T A;  4FDJ A;  2GSO A;  5AJ9 A;  5LRN A;  2GLQ A;  3WAW A;  3NKO A;  3WAX A;  1E3C P;  3T01 A;  4TN0 A;  3TX0 A;  4ZG7 A;  1EW8 A;  5K4P A;  2X98 A;  1ELY A;  5DLW A;  1ALI A;  3A52 A;  4NWX A;  3TG0 A;  4MY4 A;  2W5R A;  3ED4 A;  4N7T A;  3M7V A;  3UN2 A;  1E2S P;  3T02 A;  3OT9 A;  4UOR A;  4LR2 A;  4LRC A; 
#chains in the Genus database with same CATH topology
 5LQQ A;  4CXU A;  2IUC A;  3NKP A;  1AJA A;  4UPL A;  5L0E A;  1ZEB A;  1EI6 A;  4KM4 A;  1KH4 A;  4LRB A;  4GTX A;  1KH5 A;  3M8W A;  4UOP A;  5HRT A;  1SHN A;  3IGZ B;  1AUK A;  5LIA A;  1HDH A;  2W5V A;  3MK1 A;  3NKQ A;  4LR8 A;  2XR9 A;  4QAX A;  4KJG A;  3NKM A;  3E2D A;  2W5W A;  1N2L A;  5EGH A;  4KAV A;  3IDD A;  2GA3 A;  1KHN A;  3LXQ A;  3NKR A;  3NKN A;  5IJQ A;  1ELZ A;  1K7H A;  2VQR A;  3WAY A;  1EQJ A;  4UPH A;  4UOO A;  3UO0 A;  3NVL A;  4LR9 A;  5GRR A;  1URA A;  1P49 A;  4NWJ A;  1ANJ A;  4FDI A;  5TJ3 A;  5LRM A;  1URB A;  1KH7 A;  3BDG B;  5EGE A;  4GTY A;  4LRD A;  1ZED A;  1HJK A;  1ALK A;  2ANH A;  1ED8 A;  5C66 A;  5GOV A;  3WBH A;  1AJB A;  1KHJ A;  2D1G A;  1SHQ A;  1ED9 A;  4CYR A;  1KHK A;  4KJD A;  1O99 A;  3UNY A;  1E33 P;  1FSU A;  3BDF A;  3SZZ A;  1B8J A;  3CMR A;  4GTZ A;  1KHL A;  3MK0 A;  3IGY B;  4ZG6 A;  3MK2 A;  2IUC B;  3T00 A;  4GTW A;  3DPC A;  2GSU A;  1AJD A;  2W5X A;  3M8Y A;  5KXA A;  4B56 A;  2RH6 A;  5INH A;  2W8S A;  5L0K A;  1ALH A;  3KD8 A;  4LRF A;  4UPI A;  5DLT A;  2W8D A;  4CXS A;  2IFY A;  1N2K A;  2XRG A;  4LRE A;  4LQY A;  3SZY A;  3UN5 A;  1ALJ A;  1ANI A;  2G9Y A;  3WAV A;  3BDH A;  2W5S A;  4ZGA A;  4KAY A;  3BDG A;  1ELX A;  1ZEF A;  1EJJ A;  4CXK A;  4ZG9 A;  5DLV A;  1HQA A;  1E1Z P;  1EW2 A;  1Y6V A;  3Q3Q A;  4LRA A;  3TWZ A;  4YR1 A;  5L0B A;  1O98 A;  4LR7 A;  2ZKT A;  2QZU A;  3DYC A;  1Y7A A;  3B5Q A;  3M8Z A;  1AJC A;  4MIV A;  1KH9 A;  4UPK A;  4CYS A;  4MHX A;  3UN3 A;  5IJS A;  2GSN A;  2W5Q A;  1EW9 A;  2W5T A;  4FDJ A;  2GSO A;  5AJ9 A;  5LRN A;  2GLQ A;  3WAW A;  3NKO A;  3WAX A;  1E3C P;  3T01 A;  4TN0 A;  3TX0 A;  4ZG7 A;  1EW8 A;  5K4P A;  2X98 A;  1ELY A;  5DLW A;  1ALI A;  3A52 A;  4NWX A;  3TG0 A;  4MY4 A;  2W5R A;  3ED4 A;  4N7T A;  3M7V A;  3UN2 A;  1E2S P;  3T02 A;  3OT9 A;  4UOR A;  4LR2 A;  4LRC A; 
#chains in the Genus database with same CATH homology
 5LQQ A;  4CXU A;  2IUC A;  3NKP A;  1AJA A;  4UPL A;  5L0E A;  1ZEB A;  1EI6 A;  4KM4 A;  1KH4 A;  4LRB A;  4GTX A;  1KH5 A;  3M8W A;  4UOP A;  5HRT A;  1SHN A;  3IGZ B;  1AUK A;  5LIA A;  1HDH A;  2W5V A;  3MK1 A;  3NKQ A;  4LR8 A;  2XR9 A;  4QAX A;  4KJG A;  3NKM A;  3E2D A;  2W5W A;  1N2L A;  5EGH A;  4KAV A;  3IDD A;  2GA3 A;  1KHN A;  3LXQ A;  3NKR A;  3NKN A;  5IJQ A;  1ELZ A;  1K7H A;  2VQR A;  3WAY A;  1EQJ A;  4UPH A;  4UOO A;  3UO0 A;  3NVL A;  4LR9 A;  5GRR A;  1URA A;  1P49 A;  4NWJ A;  1ANJ A;  4FDI A;  5TJ3 A;  5LRM A;  1URB A;  1KH7 A;  3BDG B;  5EGE A;  4GTY A;  4LRD A;  1ZED A;  1HJK A;  1ALK A;  2ANH A;  1ED8 A;  5C66 A;  5GOV A;  3WBH A;  1AJB A;  1KHJ A;  2D1G A;  1SHQ A;  1ED9 A;  4CYR A;  1KHK A;  4KJD A;  1O99 A;  3UNY A;  1E33 P;  1FSU A;  3BDF A;  3SZZ A;  1B8J A;  3CMR A;  4GTZ A;  1KHL A;  3MK0 A;  3IGY B;  4ZG6 A;  3MK2 A;  2IUC B;  3T00 A;  4GTW A;  3DPC A;  2GSU A;  1AJD A;  2W5X A;  3M8Y A;  5KXA A;  4B56 A;  2RH6 A;  5INH A;  2W8S A;  5L0K A;  1ALH A;  3KD8 A;  4LRF A;  4UPI A;  5DLT A;  2W8D A;  4CXS A;  2IFY A;  1N2K A;  2XRG A;  4LRE A;  4LQY A;  3SZY A;  3UN5 A;  1ALJ A;  1ANI A;  2G9Y A;  3WAV A;  3BDH A;  2W5S A;  4ZGA A;  4KAY A;  3BDG A;  1ELX A;  1ZEF A;  1EJJ A;  4CXK A;  4ZG9 A;  5DLV A;  1HQA A;  1E1Z P;  1EW2 A;  1Y6V A;  3Q3Q A;  4LRA A;  3TWZ A;  4YR1 A;  5L0B A;  1O98 A;  4LR7 A;  2ZKT A;  2QZU A;  3DYC A;  1Y7A A;  3B5Q A;  3M8Z A;  1AJC A;  4MIV A;  1KH9 A;  4UPK A;  4CYS A;  4MHX A;  3UN3 A;  5IJS A;  2GSN A;  2W5Q A;  1EW9 A;  2W5T A;  4FDJ A;  2GSO A;  5AJ9 A;  5LRN A;  2GLQ A;  3WAW A;  3NKO A;  3WAX A;  1E3C P;  3T01 A;  4TN0 A;  3TX0 A;  4ZG7 A;  1EW8 A;  5K4P A;  2X98 A;  1ELY A;  5DLW A;  1ALI A;  3A52 A;  4NWX A;  3TG0 A;  4MY4 A;  2W5R A;  3ED4 A;  4N7T A;  3M7V A;  3UN2 A;  1E2S P;  3T02 A;  3OT9 A;  4UOR A;  4LR2 A;  4LRC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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