The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
109
|
Knots found |
|
sequence length |
301
|
structure length |
295
|
Chain Sequence |
SPRYAQIPTFMRLPHDPQPRGYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRGPGTFDLINCVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHGPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCVGDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQYARAH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| molecule keywords |
PROCLAVAMINATE AMIDINO HYDROLASE
|
| publication title |
Oligomeric Structure of Proclavaminic Acid Amidino Hydrolase: Evolution of a Hydrolytic Enzyme in Clavulanic Acid Biosynthesis
pubmed doi rcsb |
| source organism |
Streptomyces clavuligerus
|
| total genus |
109
|
| structure length |
295
|
| sequence length |
301
|
| chains with identical sequence |
B, C
|
| other databases |
 KnotProt 2.0: S +31 +31 +31
|
| ec nomenclature |
ec
3.5.3.22: Proclavaminate amidinohydrolase. |
| pdb deposition date | 2001-11-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00491 | Arginase | Arginase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Arginase; Chain A | Ureohydrolase domain |
#chains in the Genus database with same CATH superfamily 1TBJ A; 3MFV A; 4Q40 A; 1HQH A; 3TF3 A; 4MYN A; 2EIV A; 2RLA A; 2EF4 A; 1PQ3 A; 5HJ9 A; 4GSZ A; 1P8R A; 4I06 A; 3TH7 A; 4GSM A; 1ZPG A; 3MJL A; 4Q3U A; 3PZL A; 2EF5 A; 3CEV A; 3THH A; 1P8S A; 4FCI A; 3E9B A; 3NIO A; 1WVA A; 4MYK A; 3SL0 A; 1P8Q A; 3SJT A; 4DZ4 A; 5CEV A; 1ZPE A; 4MXR A; 1T4P A; 1WOG A; 4GWC A; 1R1O A; 3E8Z A; 4GWD A; 2PHO A; 3E6K A; 3LP4 A; 2A0M A; 4RHM A; 4RLA A; 3M1R A; 1XFK A; 3NIQ A; 4FCK A; 1GQ6 A; 1P8O A; 4IE2 A; 4Q3T A; 4RHJ A; 1RLA A; 1WOH A; 2PHA A; 4RHI A; 4RHQ A; 1WOI A; 4Q3R C; 4IE3 A; 1TA1 A; 1D3V A; 3SL1 A; 5HJA A; 4HZE A; 2AEB A; 4IU5 A; 4Q3V A; 4ITY A; 1T4T A; 4Q42 A; 4GSV A; 1P8P A; 1TBL A; 4MYL A; 1CEV A; 4IU0 A; 1T4R A; 3THE A; 4RHK A; 1HQG A; 3GN0 A; 3RLA A; 4CEV A; 1WVB A; 4Q3Q A; 4Q3R A; 3LHL A; 4Q3S A; 4MYF A; 3LP7 A; 3GMZ A; 4IU1 A; 1P8N A; 3THJ A; 1GQ7 A; 1T5F A; 1HQ5 A; 1T5G A; 3DJ8 A; 4HWW A; 4IE1 A; 4G3H A; 4Q3P A; 5RLA A; 4Q41 A; 3KV2 A; 1HQX A; 2ZAV A; 1TBH A; 3NIP A; 1T4S A; 4RHL A; 3E6V A; 4IXU A; 3E8Q A; 3MMR A; 3SKK A; 3MFW A; 1HQF A; 4IU4 A; 1P8M A; 3F80 A; 4IXV A; 2PLL A; 2CEV A; 4HXQ A; #chains in the Genus database with same CATH topology 4RN1 A; 5G17 A; 4RN2 A; 1TBJ A; 3MFV A; 5THU A; 5A2S A; 4Q40 A; 1HQH A; 3TF3 A; 4LXZ A; 4MYN A; 2EIV A; 2RLA A; 4ZUR A; 1W22 A; 2EF4 A; 1PQ3 A; 5HJ9 A; 3EWF A; 4GSZ A; 4QA1 A; 1P8R A; 4I06 A; 3RQD A; 3TH7 A; 4GSM A; 1ZPG A; 1T69 A; 3MJL A; 4Q3U A; 3PZL A; 2EF5 A; 3CEV A; 3THH A; 3MZ4 A; 3EZP A; 4BZ6 A; 1P8S A; 5THV A; 4FCI A; 3E9B A; 5EFB D; 5D1D A; 2VQW G; 3NIO A; 3Q9C A; 5D1C A; 3MZ6 A; 1WVA A; 5DC6 A; 5G0Y A; 4BZ7 A; 4MYK A; 3SL0 A; 1P8Q A; 3SJT A; 4DZ4 A; 5BWZ A; 5CEV A; 1ZPE A; 2VQO A; 4QA6 A; 5G0J A; 4MXR A; 4QA4 A; 1ZZ3 A; 3Q9E A; 1T4P A; 3Q9F A; 3MEN A; 4LY1 A; 5G0X A; 1WOG A; 4GWC A; 1R1O A; 3E8Z A; 4GWD A; 5IWG A; 2PHO A; 3SFF A; 3MAX A; 3C0Z A; 1C3P A; 4QA3 A; 4ZUO A; 3E6K A; 3LP4 A; 2A0M A; 5ICN B; 4RHM A; 3F06 A; 1ZZ0 A; 3M1R A; 4RLA A; 1XFK A; 3NIQ A; 2VQM A; 1C3R A; 1GQ6 A; 1P8O A; 4FCK A; 4IE2 A; 4Q3T A; 1C3S A; 1RLA A; 3F0R A; 4QA2 A; 2VCG A; 4RHJ A; 3EZT A; 1WOH A; 5G1A A; 5G0I A; 2PHA A; 5LI3 A; 5G0H A; 5EFJ D; 5EFG A; 4RHI A; 3MZ3 A; 4RHQ A; 1WOI A; 4Q3R C; 4IE3 A; 5G0G A; 5FUE A; 1TA1 A; 1D3V A; 3SL1 A; 4ZUP A; 2VQQ A; 2AEB A; 4HZE A; 4ZUN A; 4IU5 A; 2VQV A; 5EF8 A; 4Q3V A; 4ITY A; 1T4T A; 5DC8 A; 3SFH A; 4BKX B; 3EW8 A; 4Q42 A; 4GSV A; 1P8P A; 1T67 A; 1TBL A; 4MYL A; 5EEM A; 3ZNS A; 2V5W A; 1CEV A; 4CQF A; 5G12 A; 5EFN A; 5G10 A; 4IU0 A; 1T4R A; 5EEF A; 3THE A; 4RHK A; 5DC5 A; 1HQG A; 2VQJ A; 3GN0 A; 4BZ5 A; 3RLA A; 4BZ9 A; 4CBY A; 4CEV A; 1WVB A; 4BZ8 A; 4Q3Q A; 5THT A; 3ZNR A; 4Q3R A; 5G1B A; 3LHL A; 3F07 A; 5EEI A; 5G3W A; 5FCW A; 5D1B A; 3C10 A; 5EFK B; 4Q3S A; 4A69 A; 4CBT A; 5HJA A; 4MYF A; 3LP7 A; 3GMZ A; 4QA0 A; 4IU1 A; 1P8N A; 5EF7 A; 3THJ A; 1GQ7 A; 1T5F A; 5EFH A; 1HQ5 A; 4RN0 A; 1T5G A; 3DJ8 A; 4HWW A; 4IE1 A; 5THS A; 5G1C A; 4G3H A; 4Q3P A; 5RLA A; 4Q41 A; 3KV2 A; 5IX0 A; 4QA7 A; 1HQX A; 2ZAV A; 1ZZ1 A; 4QA5 A; 5JI5 A; 1TBH A; 2V5X A; 3NIP A; 1T4S A; 4RHL A; 1T64 A; 1VKG A; 3E6V A; 4IXU A; 3E8Q A; 3Q9B A; 5EEK A; 3MMR A; 5DC7 A; 5G13 A; 3SKK A; 4ZUM A; 3MFW A; 1HQF A; 4IU4 A; 4ZUQ A; 1P8M A; 3MZ7 A; 5G11 A; 2GH6 A; 3C0Y A; 3F80 A; 4IXV A; 2PLL A; 2CEV A; 4HXQ A; 5EEN A; #chains in the Genus database with same CATH homology 1TBJ A; 3MFV A; 4Q40 A; 1HQH A; 3TF3 A; 4MYN A; 2EIV A; 2RLA A; 2EF4 A; 1PQ3 A; 5HJ9 A; 4GSZ A; 1P8R A; 4I06 A; 3TH7 A; 4GSM A; 1ZPG A; 3MJL A; 4Q3U A; 3PZL A; 2EF5 A; 3CEV A; 3THH A; 1P8S A; 4FCI A; 3E9B A; 3NIO A; 1WVA A; 4MYK A; 3SL0 A; 1P8Q A; 3SJT A; 4DZ4 A; 5CEV A; 1ZPE A; 4MXR A; 1T4P A; 1WOG A; 4GWC A; 1R1O A; 3E8Z A; 4GWD A; 2PHO A; 3E6K A; 3LP4 A; 2A0M A; 4RHM A; 4RLA A; 3M1R A; 1XFK A; 3NIQ A; 4FCK A; 1GQ6 A; 1P8O A; 4IE2 A; 4Q3T A; 4RHJ A; 1RLA A; 1WOH A; 2PHA A; 4RHI A; 4RHQ A; 1WOI A; 4Q3R C; 4IE3 A; 1TA1 A; 1D3V A; 3SL1 A; 5HJA A; 4HZE A; 2AEB A; 4IU5 A; 4Q3V A; 4ITY A; 1T4T A; 4Q42 A; 4GSV A; 1P8P A; 1TBL A; 4MYL A; 1CEV A; 4IU0 A; 1T4R A; 3THE A; 4RHK A; 1HQG A; 3GN0 A; 3RLA A; 4CEV A; 1WVB A; 4Q3Q A; 4Q3R A; 3LHL A; 4Q3S A; 4MYF A; 3LP7 A; 3GMZ A; 4IU1 A; 1P8N A; 3THJ A; 1GQ7 A; 1T5F A; 1HQ5 A; 1T5G A; 3DJ8 A; 4HWW A; 4IE1 A; 4G3H A; 4Q3P A; 5RLA A; 4Q41 A; 3KV2 A; 1HQX A; 2ZAV A; 1TBH A; 3NIP A; 1T4S A; 4RHL A; 3E6V A; 4IXU A; 3E8Q A; 3MMR A; 3SKK A; 3MFW A; 1HQF A; 4IU4 A; 1P8M A; 3F80 A; 4IXV A; 2PLL A; 2CEV A; 4HXQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
