1HJKA

Alkaline phosphatase mutant h331q
Total Genus 152
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
152
Knots found
sequence length
449
structure length
448
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDQAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title Trapping and visualization of a covalent enzyme-phosphate intermediate.
pubmed doi rcsb
source organism Escherichia coli
total genus 152
structure length 448
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1997-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1hjkA00
1E3CP 3NKNA 5AJ9A 2GLQA 2W8SA 1N2KA 4LRBA 3DPCA 2GSOA 4UOOA 3WAVA 5L0EA 4YR1A 1EW8A 1O99A 3E2DA 3M8YA 5C66A 4UORA 1KH9A 2W5SA 1E1ZP 1KHKA 5TJ3A 4LRAA 4CXUA 3TX0A 3WAWA 3NKPA 4FDIA 1EI6A 4LRFA 4UOPA 5DLWA 3IDDA 1ALKA 3OT9A 3LXQA 3MK1A 5DLTA 1ZEFA 3IGYB 4FDJA 2VQRA 3Q3QA 1N2LA 4MHXA 3TWZA 2W5QA 2GA3A 4ZGAA 2W5TA 1KHJA 1K7HA 4LR2A 1ZEDA 3T00A 2W5XA 4QAXA 1KH5A 5INHA 4GTWA 2ANHA 3UN3A 3NKQA 3B5QA 2IFYA 3WBHA 4KJGA 1ALJA 4N7TA 2W5VA 3TG0A 1KHNA 1FSUA 3WAXA 1EW9A 3UN5A 3MK0A 5LQQA 4ZG9A 4LREA 4LR8A 1SHQA 1ELZA 2IUCB 3BDGB 5LIAA 1E2SP 4CXSA 2W5WA 4UPIA 4KJDA 3IGZB 4NWXA 5LRNA 3NKMA 1P49A 4UPLA 1SHNA 4ZG6A 5DLVA 5LRMA 2QZUA 1ELYA 5IJQA 3M8WA 5GRRA 2RH6A 1HDHA 4MIVA 2GSUA 2D1GA 3DYCA 4LR9A 5EGHA 4CYSA 2GSNA 3ED4A 1E33P 3CMRA 4GTXA 1HQAA 1AJAA 2XRGA 4LRDA 3SZYA 3T02A 4GTYA 1O98A 3UO0A 5EGEA 3UNYA 1EQJA 3KD8A 3NKRA 4UPHA 2ZKTA 1AJDA 3MK2A 1HJKA 1URBA 4LQYA 2IUCA 1AUKA 1Y6VA 2XR9A 3BDGA 5K4PA 4KAYA 3T01A 5L0BA 1EJJA 1KH7A 1Y7AA 3WAYA 3A52A 4LRCA 2W8DA 3BDFA 3M7VA 3SZZA 1ALHA 2W5RA 4KAVA 1AJBA 4NWJA 4TN0A 5KXAA 3M8ZA 4KM4A 4ZG7A 3NVLA 4B56A 1ANJA 4MY4A 1B8JA 5HRTA 1ANIA 1ED8A 1ELXA 4CXKA 5IJSA 4LR7A 2X98A 1KHLA 1EW2A 4CYRA 2G9YA 5GOVA 1AJCA 3UN2A 1ED9A 1ALIA 4GTZA 1URAA 4UPKA 3BDHA 1KH4A 1ZEBA 3NKOA 5L0KA
chains in the Genus database with same CATH superfamily
1E3CP 3NKNA 5AJ9A 2GLQA 2W8SA 1N2KA 4LRBA 3DPCA 2GSOA 4UOOA 3WAVA 5L0EA 4YR1A 1EW8A 1O99A 3E2DA 3M8YA 5C66A 4UORA 1KH9A 2W5SA 1E1ZP 1KHKA 5TJ3A 4LRAA 4CXUA 3TX0A 3WAWA 3NKPA 4FDIA 1EI6A 4LRFA 4UOPA 5DLWA 3IDDA 1ALKA 3OT9A 3LXQA 3MK1A 5DLTA 1ZEFA 3IGYB 4FDJA 2VQRA 3Q3QA 1N2LA 4MHXA 3TWZA 2W5QA 2GA3A 4ZGAA 2W5TA 1KHJA 1K7HA 4LR2A 1ZEDA 3T00A 2W5XA 4QAXA 1KH5A 5INHA 4GTWA 2ANHA 3UN3A 3NKQA 3B5QA 2IFYA 3WBHA 4KJGA 1ALJA 4N7TA 2W5VA 3TG0A 1KHNA 1FSUA 3WAXA 1EW9A 3UN5A 3MK0A 5LQQA 4ZG9A 4LREA 4LR8A 1SHQA 1ELZA 2IUCB 3BDGB 5LIAA 1E2SP 4CXSA 2W5WA 4UPIA 4KJDA 3IGZB 4NWXA 5LRNA 3NKMA 1P49A 4UPLA 1SHNA 4ZG6A 5DLVA 5LRMA 2QZUA 1ELYA 5IJQA 3M8WA 5GRRA 2RH6A 1HDHA 4MIVA 2GSUA 2D1GA 3DYCA 4LR9A 5EGHA 4CYSA 2GSNA 3ED4A 1E33P 3CMRA 4GTXA 1HQAA 1AJAA 2XRGA 4LRDA 3SZYA 3T02A 4GTYA 1O98A 3UO0A 5EGEA 3UNYA 1EQJA 3KD8A 3NKRA 4UPHA 2ZKTA 1AJDA 3MK2A 1HJKA 1URBA 4LQYA 2IUCA 1AUKA 1Y6VA 2XR9A 3BDGA 5K4PA 4KAYA 3T01A 5L0BA 1EJJA 1KH7A 1Y7AA 3WAYA 3A52A 4LRCA 2W8DA 3BDFA 3M7VA 3SZZA 1ALHA 2W5RA 4KAVA 1AJBA 4NWJA 4TN0A 5KXAA 3M8ZA 4KM4A 4ZG7A 3NVLA 4B56A 1ANJA 4MY4A 1B8JA 5HRTA 1ANIA 1ED8A 1ELXA 4CXKA 5IJSA 4LR7A 2X98A 1KHLA 1EW2A 4CYRA 2G9YA 5GOVA 1AJCA 3UN2A 1ED9A 1ALIA 4GTZA 1URAA 4UPKA 3BDHA 1KH4A 1ZEBA 3NKOA 5L0KA
chains in the Genus database with same CATH topology
1E3CP 3NKNA 5AJ9A 2GLQA 2W8SA 1N2KA 4LRBA 3DPCA 2GSOA 4UOOA 3WAVA 5L0EA 4YR1A 1EW8A 1O99A 3E2DA 3M8YA 5C66A 4UORA 1KH9A 2W5SA 1E1ZP 1KHKA 5TJ3A 4LRAA 4CXUA 3TX0A 3WAWA 3NKPA 4FDIA 1EI6A 4LRFA 4UOPA 5DLWA 3IDDA 1ALKA 3OT9A 3LXQA 3MK1A 5DLTA 1ZEFA 3IGYB 4FDJA 2VQRA 3Q3QA 1N2LA 4MHXA 3TWZA 2W5QA 2GA3A 4ZGAA 2W5TA 1KHJA 1K7HA 4LR2A 1ZEDA 3T00A 2W5XA 4QAXA 1KH5A 5INHA 4GTWA 2ANHA 3UN3A 3NKQA 3B5QA 2IFYA 3WBHA 4KJGA 1ALJA 4N7TA 2W5VA 3TG0A 1KHNA 1FSUA 3WAXA 1EW9A 3UN5A 3MK0A 5LQQA 4ZG9A 4LREA 4LR8A 1SHQA 1ELZA 2IUCB 3BDGB 5LIAA 1E2SP 4CXSA 2W5WA 4UPIA 4KJDA 3IGZB 4NWXA 5LRNA 3NKMA 1P49A 4UPLA 1SHNA 4ZG6A 5DLVA 5LRMA 2QZUA 1ELYA 5IJQA 3M8WA 5GRRA 2RH6A 1HDHA 4MIVA 2GSUA 2D1GA 3DYCA 4LR9A 5EGHA 4CYSA 2GSNA 3ED4A 1E33P 3CMRA 4GTXA 1HQAA 1AJAA 2XRGA 4LRDA 3SZYA 3T02A 4GTYA 1O98A 3UO0A 5EGEA 3UNYA 1EQJA 3KD8A 3NKRA 4UPHA 2ZKTA 1AJDA 3MK2A 1HJKA 1URBA 4LQYA 2IUCA 1AUKA 1Y6VA 2XR9A 3BDGA 5K4PA 4KAYA 3T01A 5L0BA 1EJJA 1KH7A 1Y7AA 3WAYA 3A52A 4LRCA 2W8DA 3BDFA 3M7VA 3SZZA 1ALHA 2W5RA 4KAVA 1AJBA 4NWJA 4TN0A 5KXAA 3M8ZA 4KM4A 4ZG7A 3NVLA 4B56A 1ANJA 4MY4A 1B8JA 5HRTA 1ANIA 1ED8A 1ELXA 4CXKA 5IJSA 4LR7A 2X98A 1KHLA 1EW2A 4CYRA 2G9YA 5GOVA 1AJCA 3UN2A 1ED9A 1ALIA 4GTZA 1URAA 4UPKA 3BDHA 1KH4A 1ZEBA 3NKOA 5L0KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E3C P;  3NKN A;  5AJ9 A;  2GLQ A;  2W8S A;  1N2K A;  4LRB A;  3DPC A;  2GSO A;  4UOO A;  3WAV A;  5L0E A;  4YR1 A;  1EW8 A;  1O99 A;  3E2D A;  3M8Y A;  5C66 A;  4UOR A;  1KH9 A;  2W5S A;  1E1Z P;  1KHK A;  5TJ3 A;  4LRA A;  4CXU A;  3TX0 A;  3WAW A;  3NKP A;  4FDI A;  1EI6 A;  4LRF A;  4UOP A;  5DLW A;  3IDD A;  1ALK A;  3OT9 A;  3LXQ A;  3MK1 A;  5DLT A;  1ZEF A;  3IGY B;  4FDJ A;  2VQR A;  3Q3Q A;  1N2L A;  4MHX A;  3TWZ A;  2W5Q A;  2GA3 A;  4ZGA A;  2W5T A;  1KHJ A;  1K7H A;  4LR2 A;  1ZED A;  3T00 A;  2W5X A;  4QAX A;  1KH5 A;  5INH A;  4GTW A;  2ANH A;  3UN3 A;  3NKQ A;  3B5Q A;  2IFY A;  3WBH A;  4KJG A;  1ALJ A;  4N7T A;  2W5V A;  3TG0 A;  1KHN A;  1FSU A;  3WAX A;  1EW9 A;  3UN5 A;  3MK0 A;  5LQQ A;  4ZG9 A;  4LRE A;  4LR8 A;  1SHQ A;  1ELZ A;  2IUC B;  3BDG B;  5LIA A;  1E2S P;  4CXS A;  2W5W A;  4UPI A;  4KJD A;  3IGZ B;  4NWX A;  5LRN A;  3NKM A;  1P49 A;  4UPL A;  1SHN A;  4ZG6 A;  5DLV A;  5LRM A;  2QZU A;  1ELY A;  5IJQ A;  3M8W A;  5GRR A;  2RH6 A;  1HDH A;  4MIV A;  2GSU A;  2D1G A;  3DYC A;  4LR9 A;  5EGH A;  4CYS A;  2GSN A;  3ED4 A;  1E33 P;  3CMR A;  4GTX A;  1HQA A;  1AJA A;  2XRG A;  4LRD A;  3SZY A;  3T02 A;  4GTY A;  1O98 A;  3UO0 A;  5EGE A;  3UNY A;  1EQJ A;  3KD8 A;  3NKR A;  4UPH A;  2ZKT A;  1AJD A;  3MK2 A;  1HJK A;  1URB A;  4LQY A;  2IUC A;  1AUK A;  1Y6V A;  2XR9 A;  3BDG A;  5K4P A;  4KAY A;  3T01 A;  5L0B A;  1EJJ A;  1KH7 A;  1Y7A A;  3WAY A;  3A52 A;  4LRC A;  2W8D A;  3BDF A;  3M7V A;  3SZZ A;  1ALH A;  2W5R A;  4KAV A;  1AJB A;  4NWJ A;  4TN0 A;  5KXA A;  3M8Z A;  4KM4 A;  4ZG7 A;  3NVL A;  4B56 A;  1ANJ A;  4MY4 A;  1B8J A;  5HRT A;  1ANI A;  1ED8 A;  1ELX A;  4CXK A;  5IJS A;  4LR7 A;  2X98 A;  1KHL A;  1EW2 A;  4CYR A;  2G9Y A;  5GOV A;  1AJC A;  3UN2 A;  1ED9 A;  1ALI A;  4GTZ A;  1URA A;  4UPK A;  3BDH A;  1KH4 A;  1ZEB A;  3NKO A;  5L0K A; 
#chains in the Genus database with same CATH topology
 1E3C P;  3NKN A;  5AJ9 A;  2GLQ A;  2W8S A;  1N2K A;  4LRB A;  3DPC A;  2GSO A;  4UOO A;  3WAV A;  5L0E A;  4YR1 A;  1EW8 A;  1O99 A;  3E2D A;  3M8Y A;  5C66 A;  4UOR A;  1KH9 A;  2W5S A;  1E1Z P;  1KHK A;  5TJ3 A;  4LRA A;  4CXU A;  3TX0 A;  3WAW A;  3NKP A;  4FDI A;  1EI6 A;  4LRF A;  4UOP A;  5DLW A;  3IDD A;  1ALK A;  3OT9 A;  3LXQ A;  3MK1 A;  5DLT A;  1ZEF A;  3IGY B;  4FDJ A;  2VQR A;  3Q3Q A;  1N2L A;  4MHX A;  3TWZ A;  2W5Q A;  2GA3 A;  4ZGA A;  2W5T A;  1KHJ A;  1K7H A;  4LR2 A;  1ZED A;  3T00 A;  2W5X A;  4QAX A;  1KH5 A;  5INH A;  4GTW A;  2ANH A;  3UN3 A;  3NKQ A;  3B5Q A;  2IFY A;  3WBH A;  4KJG A;  1ALJ A;  4N7T A;  2W5V A;  3TG0 A;  1KHN A;  1FSU A;  3WAX A;  1EW9 A;  3UN5 A;  3MK0 A;  5LQQ A;  4ZG9 A;  4LRE A;  4LR8 A;  1SHQ A;  1ELZ A;  2IUC B;  3BDG B;  5LIA A;  1E2S P;  4CXS A;  2W5W A;  4UPI A;  4KJD A;  3IGZ B;  4NWX A;  5LRN A;  3NKM A;  1P49 A;  4UPL A;  1SHN A;  4ZG6 A;  5DLV A;  5LRM A;  2QZU A;  1ELY A;  5IJQ A;  3M8W A;  5GRR A;  2RH6 A;  1HDH A;  4MIV A;  2GSU A;  2D1G A;  3DYC A;  4LR9 A;  5EGH A;  4CYS A;  2GSN A;  3ED4 A;  1E33 P;  3CMR A;  4GTX A;  1HQA A;  1AJA A;  2XRG A;  4LRD A;  3SZY A;  3T02 A;  4GTY A;  1O98 A;  3UO0 A;  5EGE A;  3UNY A;  1EQJ A;  3KD8 A;  3NKR A;  4UPH A;  2ZKT A;  1AJD A;  3MK2 A;  1HJK A;  1URB A;  4LQY A;  2IUC A;  1AUK A;  1Y6V A;  2XR9 A;  3BDG A;  5K4P A;  4KAY A;  3T01 A;  5L0B A;  1EJJ A;  1KH7 A;  1Y7A A;  3WAY A;  3A52 A;  4LRC A;  2W8D A;  3BDF A;  3M7V A;  3SZZ A;  1ALH A;  2W5R A;  4KAV A;  1AJB A;  4NWJ A;  4TN0 A;  5KXA A;  3M8Z A;  4KM4 A;  4ZG7 A;  3NVL A;  4B56 A;  1ANJ A;  4MY4 A;  1B8J A;  5HRT A;  1ANI A;  1ED8 A;  1ELX A;  4CXK A;  5IJS A;  4LR7 A;  2X98 A;  1KHL A;  1EW2 A;  4CYR A;  2G9Y A;  5GOV A;  1AJC A;  3UN2 A;  1ED9 A;  1ALI A;  4GTZ A;  1URA A;  4UPK A;  3BDH A;  1KH4 A;  1ZEB A;  3NKO A;  5L0K A; 
#chains in the Genus database with same CATH homology
 1E3C P;  3NKN A;  5AJ9 A;  2GLQ A;  2W8S A;  1N2K A;  4LRB A;  3DPC A;  2GSO A;  4UOO A;  3WAV A;  5L0E A;  4YR1 A;  1EW8 A;  1O99 A;  3E2D A;  3M8Y A;  5C66 A;  4UOR A;  1KH9 A;  2W5S A;  1E1Z P;  1KHK A;  5TJ3 A;  4LRA A;  4CXU A;  3TX0 A;  3WAW A;  3NKP A;  4FDI A;  1EI6 A;  4LRF A;  4UOP A;  5DLW A;  3IDD A;  1ALK A;  3OT9 A;  3LXQ A;  3MK1 A;  5DLT A;  1ZEF A;  3IGY B;  4FDJ A;  2VQR A;  3Q3Q A;  1N2L A;  4MHX A;  3TWZ A;  2W5Q A;  2GA3 A;  4ZGA A;  2W5T A;  1KHJ A;  1K7H A;  4LR2 A;  1ZED A;  3T00 A;  2W5X A;  4QAX A;  1KH5 A;  5INH A;  4GTW A;  2ANH A;  3UN3 A;  3NKQ A;  3B5Q A;  2IFY A;  3WBH A;  4KJG A;  1ALJ A;  4N7T A;  2W5V A;  3TG0 A;  1KHN A;  1FSU A;  3WAX A;  1EW9 A;  3UN5 A;  3MK0 A;  5LQQ A;  4ZG9 A;  4LRE A;  4LR8 A;  1SHQ A;  1ELZ A;  2IUC B;  3BDG B;  5LIA A;  1E2S P;  4CXS A;  2W5W A;  4UPI A;  4KJD A;  3IGZ B;  4NWX A;  5LRN A;  3NKM A;  1P49 A;  4UPL A;  1SHN A;  4ZG6 A;  5DLV A;  5LRM A;  2QZU A;  1ELY A;  5IJQ A;  3M8W A;  5GRR A;  2RH6 A;  1HDH A;  4MIV A;  2GSU A;  2D1G A;  3DYC A;  4LR9 A;  5EGH A;  4CYS A;  2GSN A;  3ED4 A;  1E33 P;  3CMR A;  4GTX A;  1HQA A;  1AJA A;  2XRG A;  4LRD A;  3SZY A;  3T02 A;  4GTY A;  1O98 A;  3UO0 A;  5EGE A;  3UNY A;  1EQJ A;  3KD8 A;  3NKR A;  4UPH A;  2ZKT A;  1AJD A;  3MK2 A;  1HJK A;  1URB A;  4LQY A;  2IUC A;  1AUK A;  1Y6V A;  2XR9 A;  3BDG A;  5K4P A;  4KAY A;  3T01 A;  5L0B A;  1EJJ A;  1KH7 A;  1Y7A A;  3WAY A;  3A52 A;  4LRC A;  2W8D A;  3BDF A;  3M7V A;  3SZZ A;  1ALH A;  2W5R A;  4KAV A;  1AJB A;  4NWJ A;  4TN0 A;  5KXA A;  3M8Z A;  4KM4 A;  4ZG7 A;  3NVL A;  4B56 A;  1ANJ A;  4MY4 A;  1B8J A;  5HRT A;  1ANI A;  1ED8 A;  1ELX A;  4CXK A;  5IJS A;  4LR7 A;  2X98 A;  1KHL A;  1EW2 A;  4CYR A;  2G9Y A;  5GOV A;  1AJC A;  3UN2 A;  1ED9 A;  1ALI A;  4GTZ A;  1URA A;  4UPK A;  3BDH A;  1KH4 A;  1ZEB A;  3NKO A;  5L0K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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