1KH5A

E. coli alkaline phosphatase mutant (d330n) mimic of the transition states with aluminium fluoride
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
total genus 151
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1kh5A00
4MIVA 2GSOA 3T02A 5LRMA 3WAYA 3SZZA 3SZYA 2ANHA 1EW8A 1KH9A 1KHNA 2IUCB 3UNYA 4FDIA 5LRNA 3NKMA 5EGHA 5K4PA 3IGZB 2ZKTA 3MK1A 2W5VA 4GTXA 3T01A 4KAYA 1EW9A 3TX0A 3WAVA 1ZEDA 3M7VA 5DLWA 4KJDA 5LQQA 5L0EA 5AJ9A 4ZG7A 4UOPA 1ANIA 3M8ZA 1AJAA 4LRAA 1ELYA 1EQJA 4NWJA 4UPIA 1ELZA 3UN3A 4GTWA 2G9YA 5HRTA 1E1ZP 3UN5A 1KHLA 3UO0A 4ZG9A 1ALKA 2GSNA 2W8SA 3ED4A 4QAXA 2IUCA 3BDFA 3M8WA 1AJCA 1O98A 1SHQA 5GRRA 2W5WA 3TWZA 1Y6VA 4UPHA 3WAXA 1E3CP 3DPCA 3NKRA 1URAA 5INHA 4ZG6A 1ANJA 1N2LA 4MHXA 4CYRA 1ED8A 3NKPA 3NVLA 1ELXA 1ALJA 2GA3A 3B5QA 2X98A 4CXKA 2RH6A 4KJGA 2IFYA 3IGYB 1HJKA 5IJSA 4LREA 4CYSA 1ED9A 4LRBA 4YR1A 4KAVA 4N7TA 3M8YA 4CXUA 1E33P 1KH4A 2GSUA 2VQRA 1P49A 4GTYA 1AJDA 1B8JA 2XR9A 4CXSA 3TG0A 2W5RA 1EW2A 4LQYA 1KH5A 1Y7AA 5DLTA 3BDHA 4LR9A 1ALIA 1E2SP 1HQAA 2W8DA 5LIAA 1KHJA 1O99A 3E2DA 2W5TA 2GLQA 4UOOA 4LRDA 3UN2A 3BDGB 5GOVA 4ZGAA 3Q3QA 1EI6A 5L0KA 1K7HA 1SHNA 4LR7A 1EJJA 1URBA 1AUKA 2QZUA 3OT9A 4MY4A 1ZEBA 4KM4A 4GTZA 4UPKA 3WAWA 3IDDA 4UPLA 4LRCA 4FDJA 2W5SA 3A52A 3WBHA 4LRFA 3T00A 4TN0A 2D1GA 5KXAA 4LR8A 4LR2A 1HDHA 3MK2A 1N2KA 2XRGA 1KHKA 3NKNA 1ZEFA 5TJ3A 1KH7A 5L0BA 5IJQA 4B56A 3CMRA 3KD8A 3NKOA 3NKQA 3MK0A 4UORA 5DLVA 2W5QA 2W5XA 1AJBA 3BDGA 4NWXA 5C66A 5EGEA 3LXQA 1ALHA 1FSUA 3DYCA
chains in the Genus database with same CATH superfamily
4MIVA 2GSOA 3T02A 5LRMA 3WAYA 3SZZA 3SZYA 2ANHA 1EW8A 1KH9A 1KHNA 2IUCB 3UNYA 4FDIA 5LRNA 3NKMA 5EGHA 5K4PA 3IGZB 2ZKTA 3MK1A 2W5VA 4GTXA 3T01A 4KAYA 1EW9A 3TX0A 3WAVA 1ZEDA 3M7VA 5DLWA 4KJDA 5LQQA 5L0EA 5AJ9A 4ZG7A 4UOPA 1ANIA 3M8ZA 1AJAA 4LRAA 1ELYA 1EQJA 4NWJA 4UPIA 1ELZA 3UN3A 4GTWA 2G9YA 5HRTA 1E1ZP 3UN5A 1KHLA 3UO0A 4ZG9A 1ALKA 2GSNA 2W8SA 3ED4A 4QAXA 2IUCA 3BDFA 3M8WA 1AJCA 1O98A 1SHQA 5GRRA 2W5WA 3TWZA 1Y6VA 4UPHA 3WAXA 1E3CP 3DPCA 3NKRA 1URAA 5INHA 4ZG6A 1ANJA 1N2LA 4MHXA 4CYRA 1ED8A 3NKPA 3NVLA 1ELXA 1ALJA 2GA3A 3B5QA 2X98A 4CXKA 2RH6A 4KJGA 2IFYA 3IGYB 1HJKA 5IJSA 4LREA 4CYSA 1ED9A 4LRBA 4YR1A 4KAVA 4N7TA 3M8YA 4CXUA 1E33P 1KH4A 2GSUA 2VQRA 1P49A 4GTYA 1AJDA 1B8JA 2XR9A 4CXSA 3TG0A 2W5RA 1EW2A 4LQYA 1KH5A 1Y7AA 5DLTA 3BDHA 4LR9A 1ALIA 1E2SP 1HQAA 2W8DA 5LIAA 1KHJA 1O99A 3E2DA 2W5TA 2GLQA 4UOOA 4LRDA 3UN2A 3BDGB 5GOVA 4ZGAA 3Q3QA 1EI6A 5L0KA 1K7HA 1SHNA 4LR7A 1EJJA 1URBA 1AUKA 2QZUA 3OT9A 4MY4A 1ZEBA 4KM4A 4GTZA 4UPKA 3WAWA 3IDDA 4UPLA 4LRCA 4FDJA 2W5SA 3A52A 3WBHA 4LRFA 3T00A 4TN0A 2D1GA 5KXAA 4LR8A 4LR2A 1HDHA 3MK2A 1N2KA 2XRGA 1KHKA 3NKNA 1ZEFA 5TJ3A 1KH7A 5L0BA 5IJQA 4B56A 3CMRA 3KD8A 3NKOA 3NKQA 3MK0A 4UORA 5DLVA 2W5QA 2W5XA 1AJBA 3BDGA 4NWXA 5C66A 5EGEA 3LXQA 1ALHA 1FSUA 3DYCA
chains in the Genus database with same CATH topology
4MIVA 2GSOA 3T02A 5LRMA 3WAYA 3SZZA 3SZYA 2ANHA 1EW8A 1KH9A 1KHNA 2IUCB 3UNYA 4FDIA 5LRNA 3NKMA 5EGHA 5K4PA 3IGZB 2ZKTA 3MK1A 2W5VA 4GTXA 3T01A 4KAYA 1EW9A 3TX0A 3WAVA 1ZEDA 3M7VA 5DLWA 4KJDA 5LQQA 5L0EA 5AJ9A 4ZG7A 4UOPA 1ANIA 3M8ZA 1AJAA 4LRAA 1ELYA 1EQJA 4NWJA 4UPIA 1ELZA 3UN3A 4GTWA 2G9YA 5HRTA 1E1ZP 3UN5A 1KHLA 3UO0A 4ZG9A 1ALKA 2GSNA 2W8SA 3ED4A 4QAXA 2IUCA 3BDFA 3M8WA 1AJCA 1O98A 1SHQA 5GRRA 2W5WA 3TWZA 1Y6VA 4UPHA 3WAXA 1E3CP 3DPCA 3NKRA 1URAA 5INHA 4ZG6A 1ANJA 1N2LA 4MHXA 4CYRA 1ED8A 3NKPA 3NVLA 1ELXA 1ALJA 2GA3A 3B5QA 2X98A 4CXKA 2RH6A 4KJGA 2IFYA 3IGYB 1HJKA 5IJSA 4LREA 4CYSA 1ED9A 4LRBA 4YR1A 4KAVA 4N7TA 3M8YA 4CXUA 1E33P 1KH4A 2GSUA 2VQRA 1P49A 4GTYA 1AJDA 1B8JA 2XR9A 4CXSA 3TG0A 2W5RA 1EW2A 4LQYA 1KH5A 1Y7AA 5DLTA 3BDHA 4LR9A 1ALIA 1E2SP 1HQAA 2W8DA 5LIAA 1KHJA 1O99A 3E2DA 2W5TA 2GLQA 4UOOA 4LRDA 3UN2A 3BDGB 5GOVA 4ZGAA 3Q3QA 1EI6A 5L0KA 1K7HA 1SHNA 4LR7A 1EJJA 1URBA 1AUKA 2QZUA 3OT9A 4MY4A 1ZEBA 4KM4A 4GTZA 4UPKA 3WAWA 3IDDA 4UPLA 4LRCA 4FDJA 2W5SA 3A52A 3WBHA 4LRFA 3T00A 4TN0A 2D1GA 5KXAA 4LR8A 4LR2A 1HDHA 3MK2A 1N2KA 2XRGA 1KHKA 3NKNA 1ZEFA 5TJ3A 1KH7A 5L0BA 5IJQA 4B56A 3CMRA 3KD8A 3NKOA 3NKQA 3MK0A 4UORA 5DLVA 2W5QA 2W5XA 1AJBA 3BDGA 4NWXA 5C66A 5EGEA 3LXQA 1ALHA 1FSUA 3DYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MIV A;  2GSO A;  3T02 A;  5LRM A;  3WAY A;  3SZZ A;  3SZY A;  2ANH A;  1EW8 A;  1KH9 A;  1KHN A;  2IUC B;  3UNY A;  4FDI A;  5LRN A;  3NKM A;  5EGH A;  5K4P A;  3IGZ B;  2ZKT A;  3MK1 A;  2W5V A;  4GTX A;  3T01 A;  4KAY A;  1EW9 A;  3TX0 A;  3WAV A;  1ZED A;  3M7V A;  5DLW A;  4KJD A;  5LQQ A;  5L0E A;  5AJ9 A;  4ZG7 A;  4UOP A;  1ANI A;  3M8Z A;  1AJA A;  4LRA A;  1ELY A;  1EQJ A;  4NWJ A;  4UPI A;  1ELZ A;  3UN3 A;  4GTW A;  2G9Y A;  5HRT A;  1E1Z P;  3UN5 A;  1KHL A;  3UO0 A;  4ZG9 A;  1ALK A;  2GSN A;  2W8S A;  3ED4 A;  4QAX A;  2IUC A;  3BDF A;  3M8W A;  1AJC A;  1O98 A;  1SHQ A;  5GRR A;  2W5W A;  3TWZ A;  1Y6V A;  4UPH A;  3WAX A;  1E3C P;  3DPC A;  3NKR A;  1URA A;  5INH A;  4ZG6 A;  1ANJ A;  1N2L A;  4MHX A;  4CYR A;  1ED8 A;  3NKP A;  3NVL A;  1ELX A;  1ALJ A;  2GA3 A;  3B5Q A;  2X98 A;  4CXK A;  2RH6 A;  4KJG A;  2IFY A;  3IGY B;  1HJK A;  5IJS A;  4LRE A;  4CYS A;  1ED9 A;  4LRB A;  4YR1 A;  4KAV A;  4N7T A;  3M8Y A;  4CXU A;  1E33 P;  1KH4 A;  2GSU A;  2VQR A;  1P49 A;  4GTY A;  1AJD A;  1B8J A;  2XR9 A;  4CXS A;  3TG0 A;  2W5R A;  1EW2 A;  4LQY A;  1KH5 A;  1Y7A A;  5DLT A;  3BDH A;  4LR9 A;  1ALI A;  1E2S P;  1HQA A;  2W8D A;  5LIA A;  1KHJ A;  1O99 A;  3E2D A;  2W5T A;  2GLQ A;  4UOO A;  4LRD A;  3UN2 A;  3BDG B;  5GOV A;  4ZGA A;  3Q3Q A;  1EI6 A;  5L0K A;  1K7H A;  1SHN A;  4LR7 A;  1EJJ A;  1URB A;  1AUK A;  2QZU A;  3OT9 A;  4MY4 A;  1ZEB A;  4KM4 A;  4GTZ A;  4UPK A;  3WAW A;  3IDD A;  4UPL A;  4LRC A;  4FDJ A;  2W5S A;  3A52 A;  3WBH A;  4LRF A;  3T00 A;  4TN0 A;  2D1G A;  5KXA A;  4LR8 A;  4LR2 A;  1HDH A;  3MK2 A;  1N2K A;  2XRG A;  1KHK A;  3NKN A;  1ZEF A;  5TJ3 A;  1KH7 A;  5L0B A;  5IJQ A;  4B56 A;  3CMR A;  3KD8 A;  3NKO A;  3NKQ A;  3MK0 A;  4UOR A;  5DLV A;  2W5Q A;  2W5X A;  1AJB A;  3BDG A;  4NWX A;  5C66 A;  5EGE A;  3LXQ A;  1ALH A;  1FSU A;  3DYC A; 
#chains in the Genus database with same CATH topology
 4MIV A;  2GSO A;  3T02 A;  5LRM A;  3WAY A;  3SZZ A;  3SZY A;  2ANH A;  1EW8 A;  1KH9 A;  1KHN A;  2IUC B;  3UNY A;  4FDI A;  5LRN A;  3NKM A;  5EGH A;  5K4P A;  3IGZ B;  2ZKT A;  3MK1 A;  2W5V A;  4GTX A;  3T01 A;  4KAY A;  1EW9 A;  3TX0 A;  3WAV A;  1ZED A;  3M7V A;  5DLW A;  4KJD A;  5LQQ A;  5L0E A;  5AJ9 A;  4ZG7 A;  4UOP A;  1ANI A;  3M8Z A;  1AJA A;  4LRA A;  1ELY A;  1EQJ A;  4NWJ A;  4UPI A;  1ELZ A;  3UN3 A;  4GTW A;  2G9Y A;  5HRT A;  1E1Z P;  3UN5 A;  1KHL A;  3UO0 A;  4ZG9 A;  1ALK A;  2GSN A;  2W8S A;  3ED4 A;  4QAX A;  2IUC A;  3BDF A;  3M8W A;  1AJC A;  1O98 A;  1SHQ A;  5GRR A;  2W5W A;  3TWZ A;  1Y6V A;  4UPH A;  3WAX A;  1E3C P;  3DPC A;  3NKR A;  1URA A;  5INH A;  4ZG6 A;  1ANJ A;  1N2L A;  4MHX A;  4CYR A;  1ED8 A;  3NKP A;  3NVL A;  1ELX A;  1ALJ A;  2GA3 A;  3B5Q A;  2X98 A;  4CXK A;  2RH6 A;  4KJG A;  2IFY A;  3IGY B;  1HJK A;  5IJS A;  4LRE A;  4CYS A;  1ED9 A;  4LRB A;  4YR1 A;  4KAV A;  4N7T A;  3M8Y A;  4CXU A;  1E33 P;  1KH4 A;  2GSU A;  2VQR A;  1P49 A;  4GTY A;  1AJD A;  1B8J A;  2XR9 A;  4CXS A;  3TG0 A;  2W5R A;  1EW2 A;  4LQY A;  1KH5 A;  1Y7A A;  5DLT A;  3BDH A;  4LR9 A;  1ALI A;  1E2S P;  1HQA A;  2W8D A;  5LIA A;  1KHJ A;  1O99 A;  3E2D A;  2W5T A;  2GLQ A;  4UOO A;  4LRD A;  3UN2 A;  3BDG B;  5GOV A;  4ZGA A;  3Q3Q A;  1EI6 A;  5L0K A;  1K7H A;  1SHN A;  4LR7 A;  1EJJ A;  1URB A;  1AUK A;  2QZU A;  3OT9 A;  4MY4 A;  1ZEB A;  4KM4 A;  4GTZ A;  4UPK A;  3WAW A;  3IDD A;  4UPL A;  4LRC A;  4FDJ A;  2W5S A;  3A52 A;  3WBH A;  4LRF A;  3T00 A;  4TN0 A;  2D1G A;  5KXA A;  4LR8 A;  4LR2 A;  1HDH A;  3MK2 A;  1N2K A;  2XRG A;  1KHK A;  3NKN A;  1ZEF A;  5TJ3 A;  1KH7 A;  5L0B A;  5IJQ A;  4B56 A;  3CMR A;  3KD8 A;  3NKO A;  3NKQ A;  3MK0 A;  4UOR A;  5DLV A;  2W5Q A;  2W5X A;  1AJB A;  3BDG A;  4NWX A;  5C66 A;  5EGE A;  3LXQ A;  1ALH A;  1FSU A;  3DYC A; 
#chains in the Genus database with same CATH homology
 4MIV A;  2GSO A;  3T02 A;  5LRM A;  3WAY A;  3SZZ A;  3SZY A;  2ANH A;  1EW8 A;  1KH9 A;  1KHN A;  2IUC B;  3UNY A;  4FDI A;  5LRN A;  3NKM A;  5EGH A;  5K4P A;  3IGZ B;  2ZKT A;  3MK1 A;  2W5V A;  4GTX A;  3T01 A;  4KAY A;  1EW9 A;  3TX0 A;  3WAV A;  1ZED A;  3M7V A;  5DLW A;  4KJD A;  5LQQ A;  5L0E A;  5AJ9 A;  4ZG7 A;  4UOP A;  1ANI A;  3M8Z A;  1AJA A;  4LRA A;  1ELY A;  1EQJ A;  4NWJ A;  4UPI A;  1ELZ A;  3UN3 A;  4GTW A;  2G9Y A;  5HRT A;  1E1Z P;  3UN5 A;  1KHL A;  3UO0 A;  4ZG9 A;  1ALK A;  2GSN A;  2W8S A;  3ED4 A;  4QAX A;  2IUC A;  3BDF A;  3M8W A;  1AJC A;  1O98 A;  1SHQ A;  5GRR A;  2W5W A;  3TWZ A;  1Y6V A;  4UPH A;  3WAX A;  1E3C P;  3DPC A;  3NKR A;  1URA A;  5INH A;  4ZG6 A;  1ANJ A;  1N2L A;  4MHX A;  4CYR A;  1ED8 A;  3NKP A;  3NVL A;  1ELX A;  1ALJ A;  2GA3 A;  3B5Q A;  2X98 A;  4CXK A;  2RH6 A;  4KJG A;  2IFY A;  3IGY B;  1HJK A;  5IJS A;  4LRE A;  4CYS A;  1ED9 A;  4LRB A;  4YR1 A;  4KAV A;  4N7T A;  3M8Y A;  4CXU A;  1E33 P;  1KH4 A;  2GSU A;  2VQR A;  1P49 A;  4GTY A;  1AJD A;  1B8J A;  2XR9 A;  4CXS A;  3TG0 A;  2W5R A;  1EW2 A;  4LQY A;  1KH5 A;  1Y7A A;  5DLT A;  3BDH A;  4LR9 A;  1ALI A;  1E2S P;  1HQA A;  2W8D A;  5LIA A;  1KHJ A;  1O99 A;  3E2D A;  2W5T A;  2GLQ A;  4UOO A;  4LRD A;  3UN2 A;  3BDG B;  5GOV A;  4ZGA A;  3Q3Q A;  1EI6 A;  5L0K A;  1K7H A;  1SHN A;  4LR7 A;  1EJJ A;  1URB A;  1AUK A;  2QZU A;  3OT9 A;  4MY4 A;  1ZEB A;  4KM4 A;  4GTZ A;  4UPK A;  3WAW A;  3IDD A;  4UPL A;  4LRC A;  4FDJ A;  2W5S A;  3A52 A;  3WBH A;  4LRF A;  3T00 A;  4TN0 A;  2D1G A;  5KXA A;  4LR8 A;  4LR2 A;  1HDH A;  3MK2 A;  1N2K A;  2XRG A;  1KHK A;  3NKN A;  1ZEF A;  5TJ3 A;  1KH7 A;  5L0B A;  5IJQ A;  4B56 A;  3CMR A;  3KD8 A;  3NKO A;  3NKQ A;  3MK0 A;  4UOR A;  5DLV A;  2W5Q A;  2W5X A;  1AJB A;  3BDG A;  4NWX A;  5C66 A;  5EGE A;  3LXQ A;  1ALH A;  1FSU A;  3DYC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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