1KHNA

E. coli alkaline phosphatase mutant (d153hd330n) zinc form
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
total genus 142
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1khnA00
5DLTA 5INHA 2D1GA 3UN2A 3T00A 1KH9A 3UN3A 3MK0A 3SZYA 5GRRA 2G9YA 2W8DA 5LRNA 5LIAA 5EGEA 1KHLA 4LR2A 4GTZA 4CXSA 3OT9A 2RH6A 3WAXA 2W5QA 1HJKA 3NVLA 4GTXA 1AUKA 3Q3QA 3UO0A 3ED4A 3WBHA 2GSNA 4CYSA 4CXKA 1ANIA 2W5TA 4LR7A 1ZEFA 3IGYB 4KM4A 1ELZA 2W5SA 4ZG6A 2QZUA 4TN0A 1EW2A 1HDHA 4NWJA 3T02A 2IFYA 4N7TA 3WAWA 1E3CP 3B5QA 3MK2A 4YR1A 4UPKA 2VQRA 4CXUA 4FDIA 4FDJA 5DLVA 2ANHA 4LRAA 1ALKA 2GSOA 1FSUA 2W5WA 1K7HA 2W5VA 4LR9A 4GTYA 4NWXA 4UPLA 5L0KA 4CYRA 4ZGAA 1EW8A 3M8ZA 5EGHA 4LQYA 4LRDA 1EJJA 3MK1A 1KHKA 4B56A 1SHQA 1Y6VA 1ELYA 2GSUA 3IDDA 2W5RA 3WAVA 5C66A 5LQQA 3NKRA 3SZZA 5LRMA 3KD8A 1ALIA 4LR8A 1ALJA 1EW9A 3T01A 1B8JA 1ALHA 2XR9A 4MHXA 4MY4A 1E33P 3BDGA 3NKOA 5TJ3A 3DYCA 3NKNA 1ED9A 3BDHA 4LRBA 3BDGB 4KJGA 3M8YA 4UPHA 1ZEDA 3BDFA 3NKQA 1ANJA 2GLQA 5HRTA 3E2DA 3TX0A 1O98A 3NKMA 4LRCA 5GOVA 4KJDA 4UOOA 3M7VA 5L0EA 4LRFA 4UOPA 1SHNA 3M8WA 3UN5A 4KAVA 1URAA 1AJCA 2GA3A 5K4PA 3CMRA 1ED8A 1Y7AA 1KHJA 4KAYA 2W8SA 3UNYA 1KHNA 5AJ9A 1EQJA 1KH7A 1N2KA 4QAXA 3NKPA 1KH4A 1HQAA 4UORA 5IJSA 3TG0A 3DPCA 5IJQA 2XRGA 5L0BA 2X98A 1AJBA 1AJAA 2IUCA 3IGZB 5DLWA 1EI6A 1N2LA 1AJDA 1KH5A 4GTWA 3TWZA 3LXQA 1ZEBA 2W5XA 1E2SP 1ELXA 2IUCB 4LREA 4ZG7A 4MIVA 1O99A 4UPIA 5KXAA 1URBA 4ZG9A 1E1ZP 1P49A 3A52A 2ZKTA 3WAYA
chains in the Genus database with same CATH superfamily
5DLTA 5INHA 2D1GA 3UN2A 3T00A 1KH9A 3UN3A 3MK0A 3SZYA 5GRRA 2G9YA 2W8DA 5LRNA 5LIAA 5EGEA 1KHLA 4LR2A 4GTZA 4CXSA 3OT9A 2RH6A 3WAXA 2W5QA 1HJKA 3NVLA 4GTXA 1AUKA 3Q3QA 3UO0A 3ED4A 3WBHA 2GSNA 4CYSA 4CXKA 1ANIA 2W5TA 4LR7A 1ZEFA 3IGYB 4KM4A 1ELZA 2W5SA 4ZG6A 2QZUA 4TN0A 1EW2A 1HDHA 4NWJA 3T02A 2IFYA 4N7TA 3WAWA 1E3CP 3B5QA 3MK2A 4YR1A 4UPKA 2VQRA 4CXUA 4FDIA 4FDJA 5DLVA 2ANHA 4LRAA 1ALKA 2GSOA 1FSUA 2W5WA 1K7HA 2W5VA 4LR9A 4GTYA 4NWXA 4UPLA 5L0KA 4CYRA 4ZGAA 1EW8A 3M8ZA 5EGHA 4LQYA 4LRDA 1EJJA 3MK1A 1KHKA 4B56A 1SHQA 1Y6VA 1ELYA 2GSUA 3IDDA 2W5RA 3WAVA 5C66A 5LQQA 3NKRA 3SZZA 5LRMA 3KD8A 1ALIA 4LR8A 1ALJA 1EW9A 3T01A 1B8JA 1ALHA 2XR9A 4MHXA 4MY4A 1E33P 3BDGA 3NKOA 5TJ3A 3DYCA 3NKNA 1ED9A 3BDHA 4LRBA 3BDGB 4KJGA 3M8YA 4UPHA 1ZEDA 3BDFA 3NKQA 1ANJA 2GLQA 5HRTA 3E2DA 3TX0A 1O98A 3NKMA 4LRCA 5GOVA 4KJDA 4UOOA 3M7VA 5L0EA 4LRFA 4UOPA 1SHNA 3M8WA 3UN5A 4KAVA 1URAA 1AJCA 2GA3A 5K4PA 3CMRA 1ED8A 1Y7AA 1KHJA 4KAYA 2W8SA 3UNYA 1KHNA 5AJ9A 1EQJA 1KH7A 1N2KA 4QAXA 3NKPA 1KH4A 1HQAA 4UORA 5IJSA 3TG0A 3DPCA 5IJQA 2XRGA 5L0BA 2X98A 1AJBA 1AJAA 2IUCA 3IGZB 5DLWA 1EI6A 1N2LA 1AJDA 1KH5A 4GTWA 3TWZA 3LXQA 1ZEBA 2W5XA 1E2SP 1ELXA 2IUCB 4LREA 4ZG7A 4MIVA 1O99A 4UPIA 5KXAA 1URBA 4ZG9A 1E1ZP 1P49A 3A52A 2ZKTA 3WAYA
chains in the Genus database with same CATH topology
5DLTA 5INHA 2D1GA 3UN2A 3T00A 1KH9A 3UN3A 3MK0A 3SZYA 5GRRA 2G9YA 2W8DA 5LRNA 5LIAA 5EGEA 1KHLA 4LR2A 4GTZA 4CXSA 3OT9A 2RH6A 3WAXA 2W5QA 1HJKA 3NVLA 4GTXA 1AUKA 3Q3QA 3UO0A 3ED4A 3WBHA 2GSNA 4CYSA 4CXKA 1ANIA 2W5TA 4LR7A 1ZEFA 3IGYB 4KM4A 1ELZA 2W5SA 4ZG6A 2QZUA 4TN0A 1EW2A 1HDHA 4NWJA 3T02A 2IFYA 4N7TA 3WAWA 1E3CP 3B5QA 3MK2A 4YR1A 4UPKA 2VQRA 4CXUA 4FDIA 4FDJA 5DLVA 2ANHA 4LRAA 1ALKA 2GSOA 1FSUA 2W5WA 1K7HA 2W5VA 4LR9A 4GTYA 4NWXA 4UPLA 5L0KA 4CYRA 4ZGAA 1EW8A 3M8ZA 5EGHA 4LQYA 4LRDA 1EJJA 3MK1A 1KHKA 4B56A 1SHQA 1Y6VA 1ELYA 2GSUA 3IDDA 2W5RA 3WAVA 5C66A 5LQQA 3NKRA 3SZZA 5LRMA 3KD8A 1ALIA 4LR8A 1ALJA 1EW9A 3T01A 1B8JA 1ALHA 2XR9A 4MHXA 4MY4A 1E33P 3BDGA 3NKOA 5TJ3A 3DYCA 3NKNA 1ED9A 3BDHA 4LRBA 3BDGB 4KJGA 3M8YA 4UPHA 1ZEDA 3BDFA 3NKQA 1ANJA 2GLQA 5HRTA 3E2DA 3TX0A 1O98A 3NKMA 4LRCA 5GOVA 4KJDA 4UOOA 3M7VA 5L0EA 4LRFA 4UOPA 1SHNA 3M8WA 3UN5A 4KAVA 1URAA 1AJCA 2GA3A 5K4PA 3CMRA 1ED8A 1Y7AA 1KHJA 4KAYA 2W8SA 3UNYA 1KHNA 5AJ9A 1EQJA 1KH7A 1N2KA 4QAXA 3NKPA 1KH4A 1HQAA 4UORA 5IJSA 3TG0A 3DPCA 5IJQA 2XRGA 5L0BA 2X98A 1AJBA 1AJAA 2IUCA 3IGZB 5DLWA 1EI6A 1N2LA 1AJDA 1KH5A 4GTWA 3TWZA 3LXQA 1ZEBA 2W5XA 1E2SP 1ELXA 2IUCB 4LREA 4ZG7A 4MIVA 1O99A 4UPIA 5KXAA 1URBA 4ZG9A 1E1ZP 1P49A 3A52A 2ZKTA 3WAYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DLT A;  5INH A;  2D1G A;  3UN2 A;  3T00 A;  1KH9 A;  3UN3 A;  3MK0 A;  3SZY A;  5GRR A;  2G9Y A;  2W8D A;  5LRN A;  5LIA A;  5EGE A;  1KHL A;  4LR2 A;  4GTZ A;  4CXS A;  3OT9 A;  2RH6 A;  3WAX A;  2W5Q A;  1HJK A;  3NVL A;  4GTX A;  1AUK A;  3Q3Q A;  3UO0 A;  3ED4 A;  3WBH A;  2GSN A;  4CYS A;  4CXK A;  1ANI A;  2W5T A;  4LR7 A;  1ZEF A;  3IGY B;  4KM4 A;  1ELZ A;  2W5S A;  4ZG6 A;  2QZU A;  4TN0 A;  1EW2 A;  1HDH A;  4NWJ A;  3T02 A;  2IFY A;  4N7T A;  3WAW A;  1E3C P;  3B5Q A;  3MK2 A;  4YR1 A;  4UPK A;  2VQR A;  4CXU A;  4FDI A;  4FDJ A;  5DLV A;  2ANH A;  4LRA A;  1ALK A;  2GSO A;  1FSU A;  2W5W A;  1K7H A;  2W5V A;  4LR9 A;  4GTY A;  4NWX A;  4UPL A;  5L0K A;  4CYR A;  4ZGA A;  1EW8 A;  3M8Z A;  5EGH A;  4LQY A;  4LRD A;  1EJJ A;  3MK1 A;  1KHK A;  4B56 A;  1SHQ A;  1Y6V A;  1ELY A;  2GSU A;  3IDD A;  2W5R A;  3WAV A;  5C66 A;  5LQQ A;  3NKR A;  3SZZ A;  5LRM A;  3KD8 A;  1ALI A;  4LR8 A;  1ALJ A;  1EW9 A;  3T01 A;  1B8J A;  1ALH A;  2XR9 A;  4MHX A;  4MY4 A;  1E33 P;  3BDG A;  3NKO A;  5TJ3 A;  3DYC A;  3NKN A;  1ED9 A;  3BDH A;  4LRB A;  3BDG B;  4KJG A;  3M8Y A;  4UPH A;  1ZED A;  3BDF A;  3NKQ A;  1ANJ A;  2GLQ A;  5HRT A;  3E2D A;  3TX0 A;  1O98 A;  3NKM A;  4LRC A;  5GOV A;  4KJD A;  4UOO A;  3M7V A;  5L0E A;  4LRF A;  4UOP A;  1SHN A;  3M8W A;  3UN5 A;  4KAV A;  1URA A;  1AJC A;  2GA3 A;  5K4P A;  3CMR A;  1ED8 A;  1Y7A A;  1KHJ A;  4KAY A;  2W8S A;  3UNY A;  1KHN A;  5AJ9 A;  1EQJ A;  1KH7 A;  1N2K A;  4QAX A;  3NKP A;  1KH4 A;  1HQA A;  4UOR A;  5IJS A;  3TG0 A;  3DPC A;  5IJQ A;  2XRG A;  5L0B A;  2X98 A;  1AJB A;  1AJA A;  2IUC A;  3IGZ B;  5DLW A;  1EI6 A;  1N2L A;  1AJD A;  1KH5 A;  4GTW A;  3TWZ A;  3LXQ A;  1ZEB A;  2W5X A;  1E2S P;  1ELX A;  2IUC B;  4LRE A;  4ZG7 A;  4MIV A;  1O99 A;  4UPI A;  5KXA A;  1URB A;  4ZG9 A;  1E1Z P;  1P49 A;  3A52 A;  2ZKT A;  3WAY A; 
#chains in the Genus database with same CATH topology
 5DLT A;  5INH A;  2D1G A;  3UN2 A;  3T00 A;  1KH9 A;  3UN3 A;  3MK0 A;  3SZY A;  5GRR A;  2G9Y A;  2W8D A;  5LRN A;  5LIA A;  5EGE A;  1KHL A;  4LR2 A;  4GTZ A;  4CXS A;  3OT9 A;  2RH6 A;  3WAX A;  2W5Q A;  1HJK A;  3NVL A;  4GTX A;  1AUK A;  3Q3Q A;  3UO0 A;  3ED4 A;  3WBH A;  2GSN A;  4CYS A;  4CXK A;  1ANI A;  2W5T A;  4LR7 A;  1ZEF A;  3IGY B;  4KM4 A;  1ELZ A;  2W5S A;  4ZG6 A;  2QZU A;  4TN0 A;  1EW2 A;  1HDH A;  4NWJ A;  3T02 A;  2IFY A;  4N7T A;  3WAW A;  1E3C P;  3B5Q A;  3MK2 A;  4YR1 A;  4UPK A;  2VQR A;  4CXU A;  4FDI A;  4FDJ A;  5DLV A;  2ANH A;  4LRA A;  1ALK A;  2GSO A;  1FSU A;  2W5W A;  1K7H A;  2W5V A;  4LR9 A;  4GTY A;  4NWX A;  4UPL A;  5L0K A;  4CYR A;  4ZGA A;  1EW8 A;  3M8Z A;  5EGH A;  4LQY A;  4LRD A;  1EJJ A;  3MK1 A;  1KHK A;  4B56 A;  1SHQ A;  1Y6V A;  1ELY A;  2GSU A;  3IDD A;  2W5R A;  3WAV A;  5C66 A;  5LQQ A;  3NKR A;  3SZZ A;  5LRM A;  3KD8 A;  1ALI A;  4LR8 A;  1ALJ A;  1EW9 A;  3T01 A;  1B8J A;  1ALH A;  2XR9 A;  4MHX A;  4MY4 A;  1E33 P;  3BDG A;  3NKO A;  5TJ3 A;  3DYC A;  3NKN A;  1ED9 A;  3BDH A;  4LRB A;  3BDG B;  4KJG A;  3M8Y A;  4UPH A;  1ZED A;  3BDF A;  3NKQ A;  1ANJ A;  2GLQ A;  5HRT A;  3E2D A;  3TX0 A;  1O98 A;  3NKM A;  4LRC A;  5GOV A;  4KJD A;  4UOO A;  3M7V A;  5L0E A;  4LRF A;  4UOP A;  1SHN A;  3M8W A;  3UN5 A;  4KAV A;  1URA A;  1AJC A;  2GA3 A;  5K4P A;  3CMR A;  1ED8 A;  1Y7A A;  1KHJ A;  4KAY A;  2W8S A;  3UNY A;  1KHN A;  5AJ9 A;  1EQJ A;  1KH7 A;  1N2K A;  4QAX A;  3NKP A;  1KH4 A;  1HQA A;  4UOR A;  5IJS A;  3TG0 A;  3DPC A;  5IJQ A;  2XRG A;  5L0B A;  2X98 A;  1AJB A;  1AJA A;  2IUC A;  3IGZ B;  5DLW A;  1EI6 A;  1N2L A;  1AJD A;  1KH5 A;  4GTW A;  3TWZ A;  3LXQ A;  1ZEB A;  2W5X A;  1E2S P;  1ELX A;  2IUC B;  4LRE A;  4ZG7 A;  4MIV A;  1O99 A;  4UPI A;  5KXA A;  1URB A;  4ZG9 A;  1E1Z P;  1P49 A;  3A52 A;  2ZKT A;  3WAY A; 
#chains in the Genus database with same CATH homology
 5DLT A;  5INH A;  2D1G A;  3UN2 A;  3T00 A;  1KH9 A;  3UN3 A;  3MK0 A;  3SZY A;  5GRR A;  2G9Y A;  2W8D A;  5LRN A;  5LIA A;  5EGE A;  1KHL A;  4LR2 A;  4GTZ A;  4CXS A;  3OT9 A;  2RH6 A;  3WAX A;  2W5Q A;  1HJK A;  3NVL A;  4GTX A;  1AUK A;  3Q3Q A;  3UO0 A;  3ED4 A;  3WBH A;  2GSN A;  4CYS A;  4CXK A;  1ANI A;  2W5T A;  4LR7 A;  1ZEF A;  3IGY B;  4KM4 A;  1ELZ A;  2W5S A;  4ZG6 A;  2QZU A;  4TN0 A;  1EW2 A;  1HDH A;  4NWJ A;  3T02 A;  2IFY A;  4N7T A;  3WAW A;  1E3C P;  3B5Q A;  3MK2 A;  4YR1 A;  4UPK A;  2VQR A;  4CXU A;  4FDI A;  4FDJ A;  5DLV A;  2ANH A;  4LRA A;  1ALK A;  2GSO A;  1FSU A;  2W5W A;  1K7H A;  2W5V A;  4LR9 A;  4GTY A;  4NWX A;  4UPL A;  5L0K A;  4CYR A;  4ZGA A;  1EW8 A;  3M8Z A;  5EGH A;  4LQY A;  4LRD A;  1EJJ A;  3MK1 A;  1KHK A;  4B56 A;  1SHQ A;  1Y6V A;  1ELY A;  2GSU A;  3IDD A;  2W5R A;  3WAV A;  5C66 A;  5LQQ A;  3NKR A;  3SZZ A;  5LRM A;  3KD8 A;  1ALI A;  4LR8 A;  1ALJ A;  1EW9 A;  3T01 A;  1B8J A;  1ALH A;  2XR9 A;  4MHX A;  4MY4 A;  1E33 P;  3BDG A;  3NKO A;  5TJ3 A;  3DYC A;  3NKN A;  1ED9 A;  3BDH A;  4LRB A;  3BDG B;  4KJG A;  3M8Y A;  4UPH A;  1ZED A;  3BDF A;  3NKQ A;  1ANJ A;  2GLQ A;  5HRT A;  3E2D A;  3TX0 A;  1O98 A;  3NKM A;  4LRC A;  5GOV A;  4KJD A;  4UOO A;  3M7V A;  5L0E A;  4LRF A;  4UOP A;  1SHN A;  3M8W A;  3UN5 A;  4KAV A;  1URA A;  1AJC A;  2GA3 A;  5K4P A;  3CMR A;  1ED8 A;  1Y7A A;  1KHJ A;  4KAY A;  2W8S A;  3UNY A;  1KHN A;  5AJ9 A;  1EQJ A;  1KH7 A;  1N2K A;  4QAX A;  3NKP A;  1KH4 A;  1HQA A;  4UOR A;  5IJS A;  3TG0 A;  3DPC A;  5IJQ A;  2XRG A;  5L0B A;  2X98 A;  1AJB A;  1AJA A;  2IUC A;  3IGZ B;  5DLW A;  1EI6 A;  1N2L A;  1AJD A;  1KH5 A;  4GTW A;  3TWZ A;  3LXQ A;  1ZEB A;  2W5X A;  1E2S P;  1ELX A;  2IUC B;  4LRE A;  4ZG7 A;  4MIV A;  1O99 A;  4UPI A;  5KXA A;  1URB A;  4ZG9 A;  1E1Z P;  1P49 A;  3A52 A;  2ZKT A;  3WAY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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