1URBA

Alkaline phosphatase (n51mg)
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Alkaline phosphatase
molecule keywords ALKALINE PHOSPHATASE
publication title Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
total genus 163
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1996-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1urbA00
4LR7A 1HQAA 1O98A 4LR9A 3KD8A 1KHJA 2ZKTA 3Q3QA 3UN5A 4ZG6A 1HJKA 1ALHA 5IJQA 1K7HA 3TWZA 3M7VA 4UOPA 2XR9A 4LRFA 1AJDA 3TX0A 2GSUA 4KAYA 1KH4A 4LREA 1ED8A 3NKQA 1KHKA 1KH9A 2W5TA 5EGHA 3MK1A 1AJAA 4QAXA 4YR1A 4N7TA 3WBHA 1EJJA 3MK2A 2W5RA 4KM4A 5EGEA 1KH5A 3NKOA 2W5SA 5L0KA 3UO0A 1URBA 1EW2A 2ANHA 1URAA 3E2DA 1FSUA 3NKMA 4CXUA 5IJSA 3BDGB 1E1ZP 5L0BA 3WAXA 1Y6VA 2D1GA 2IUCB 1ZEBA 1B8JA 4CXKA 2GLQA 1KHLA 3IGZB 2RH6A 2X98A 3UN3A 1AJCA 1KHNA 5LRMA 4NWXA 4ZGAA 3DYCA 3T02A 4TN0A 5LIAA 3M8WA 4UORA 4CXSA 3SZYA 5C66A 2GSNA 5LQQA 4CYSA 3M8YA 1SHNA 1E33P 1EI6A 5HRTA 4GTWA 4LRDA 4MY4A 3LXQA 4MHXA 3ED4A 2VQRA 3BDFA 4B56A 1KH7A 5KXAA 1ANIA 3MK0A 3NKNA 4LR2A 5DLVA 3WAYA 4UPKA 5AJ9A 4ZG9A 5L0EA 1ELYA 2W8SA 3IGYB 1E2SP 1ANJA 4LQYA 4KJDA 5INHA 3IDDA 3A52A 1E3CP 4UPHA 3DPCA 4MIVA 3T00A 3UN2A 1AUKA 1N2LA 4FDJA 5K4PA 4KJGA 1O99A 1AJBA 1SHQA 3CMRA 3WAWA 4UOOA 4LRBA 3BDGA 3NKPA 3B5QA 1ALIA 1Y7AA 2IUCA 1ELXA 2W5WA 3NVLA 1HDHA 4LRAA 1EQJA 2XRGA 1ALJA 1N2KA 4KAVA 2IFYA 5DLTA 4LR8A 5GRRA 1ALKA 3T01A 5LRNA 1EW8A 4NWJA 2GA3A 1ED9A 1EW9A 3TG0A 3NKRA 1P49A 4UPLA 2W5XA 2W8DA 1ZEFA 2W5VA 5TJ3A 3SZZA 1ZEDA 2G9YA 2QZUA 5DLWA 4GTXA 2W5QA 4ZG7A 3M8ZA 2GSOA 1ELZA 4FDIA 4GTZA 4UPIA 3WAVA 3OT9A 3UNYA 4GTYA 5GOVA 3BDHA 4CYRA 4LRCA
chains in the Genus database with same CATH superfamily
4LR7A 1HQAA 1O98A 4LR9A 3KD8A 1KHJA 2ZKTA 3Q3QA 3UN5A 4ZG6A 1HJKA 1ALHA 5IJQA 1K7HA 3TWZA 3M7VA 4UOPA 2XR9A 4LRFA 1AJDA 3TX0A 2GSUA 4KAYA 1KH4A 4LREA 1ED8A 3NKQA 1KHKA 1KH9A 2W5TA 5EGHA 3MK1A 1AJAA 4QAXA 4YR1A 4N7TA 3WBHA 1EJJA 3MK2A 2W5RA 4KM4A 5EGEA 1KH5A 3NKOA 2W5SA 5L0KA 3UO0A 1URBA 1EW2A 2ANHA 1URAA 3E2DA 1FSUA 3NKMA 4CXUA 5IJSA 3BDGB 1E1ZP 5L0BA 3WAXA 1Y6VA 2D1GA 2IUCB 1ZEBA 1B8JA 4CXKA 2GLQA 1KHLA 3IGZB 2RH6A 2X98A 3UN3A 1AJCA 1KHNA 5LRMA 4NWXA 4ZGAA 3DYCA 3T02A 4TN0A 5LIAA 3M8WA 4UORA 4CXSA 3SZYA 5C66A 2GSNA 5LQQA 4CYSA 3M8YA 1SHNA 1E33P 1EI6A 5HRTA 4GTWA 4LRDA 4MY4A 3LXQA 4MHXA 3ED4A 2VQRA 3BDFA 4B56A 1KH7A 5KXAA 1ANIA 3MK0A 3NKNA 4LR2A 5DLVA 3WAYA 4UPKA 5AJ9A 4ZG9A 5L0EA 1ELYA 2W8SA 3IGYB 1E2SP 1ANJA 4LQYA 4KJDA 5INHA 3IDDA 3A52A 1E3CP 4UPHA 3DPCA 4MIVA 3T00A 3UN2A 1AUKA 1N2LA 4FDJA 5K4PA 4KJGA 1O99A 1AJBA 1SHQA 3CMRA 3WAWA 4UOOA 4LRBA 3BDGA 3NKPA 3B5QA 1ALIA 1Y7AA 2IUCA 1ELXA 2W5WA 3NVLA 1HDHA 4LRAA 1EQJA 2XRGA 1ALJA 1N2KA 4KAVA 2IFYA 5DLTA 4LR8A 5GRRA 1ALKA 3T01A 5LRNA 1EW8A 4NWJA 2GA3A 1ED9A 1EW9A 3TG0A 3NKRA 1P49A 4UPLA 2W5XA 2W8DA 1ZEFA 2W5VA 5TJ3A 3SZZA 1ZEDA 2G9YA 2QZUA 5DLWA 4GTXA 2W5QA 4ZG7A 3M8ZA 2GSOA 1ELZA 4FDIA 4GTZA 4UPIA 3WAVA 3OT9A 3UNYA 4GTYA 5GOVA 3BDHA 4CYRA 4LRCA
chains in the Genus database with same CATH topology
4LR7A 1HQAA 1O98A 4LR9A 3KD8A 1KHJA 2ZKTA 3Q3QA 3UN5A 4ZG6A 1HJKA 1ALHA 5IJQA 1K7HA 3TWZA 3M7VA 4UOPA 2XR9A 4LRFA 1AJDA 3TX0A 2GSUA 4KAYA 1KH4A 4LREA 1ED8A 3NKQA 1KHKA 1KH9A 2W5TA 5EGHA 3MK1A 1AJAA 4QAXA 4YR1A 4N7TA 3WBHA 1EJJA 3MK2A 2W5RA 4KM4A 5EGEA 1KH5A 3NKOA 2W5SA 5L0KA 3UO0A 1URBA 1EW2A 2ANHA 1URAA 3E2DA 1FSUA 3NKMA 4CXUA 5IJSA 3BDGB 1E1ZP 5L0BA 3WAXA 1Y6VA 2D1GA 2IUCB 1ZEBA 1B8JA 4CXKA 2GLQA 1KHLA 3IGZB 2RH6A 2X98A 3UN3A 1AJCA 1KHNA 5LRMA 4NWXA 4ZGAA 3DYCA 3T02A 4TN0A 5LIAA 3M8WA 4UORA 4CXSA 3SZYA 5C66A 2GSNA 5LQQA 4CYSA 3M8YA 1SHNA 1E33P 1EI6A 5HRTA 4GTWA 4LRDA 4MY4A 3LXQA 4MHXA 3ED4A 2VQRA 3BDFA 4B56A 1KH7A 5KXAA 1ANIA 3MK0A 3NKNA 4LR2A 5DLVA 3WAYA 4UPKA 5AJ9A 4ZG9A 5L0EA 1ELYA 2W8SA 3IGYB 1E2SP 1ANJA 4LQYA 4KJDA 5INHA 3IDDA 3A52A 1E3CP 4UPHA 3DPCA 4MIVA 3T00A 3UN2A 1AUKA 1N2LA 4FDJA 5K4PA 4KJGA 1O99A 1AJBA 1SHQA 3CMRA 3WAWA 4UOOA 4LRBA 3BDGA 3NKPA 3B5QA 1ALIA 1Y7AA 2IUCA 1ELXA 2W5WA 3NVLA 1HDHA 4LRAA 1EQJA 2XRGA 1ALJA 1N2KA 4KAVA 2IFYA 5DLTA 4LR8A 5GRRA 1ALKA 3T01A 5LRNA 1EW8A 4NWJA 2GA3A 1ED9A 1EW9A 3TG0A 3NKRA 1P49A 4UPLA 2W5XA 2W8DA 1ZEFA 2W5VA 5TJ3A 3SZZA 1ZEDA 2G9YA 2QZUA 5DLWA 4GTXA 2W5QA 4ZG7A 3M8ZA 2GSOA 1ELZA 4FDIA 4GTZA 4UPIA 3WAVA 3OT9A 3UNYA 4GTYA 5GOVA 3BDHA 4CYRA 4LRCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LR7 A;  1HQA A;  1O98 A;  4LR9 A;  3KD8 A;  1KHJ A;  2ZKT A;  3Q3Q A;  3UN5 A;  4ZG6 A;  1HJK A;  1ALH A;  5IJQ A;  1K7H A;  3TWZ A;  3M7V A;  4UOP A;  2XR9 A;  4LRF A;  1AJD A;  3TX0 A;  2GSU A;  4KAY A;  1KH4 A;  4LRE A;  1ED8 A;  3NKQ A;  1KHK A;  1KH9 A;  2W5T A;  5EGH A;  3MK1 A;  1AJA A;  4QAX A;  4YR1 A;  4N7T A;  3WBH A;  1EJJ A;  3MK2 A;  2W5R A;  4KM4 A;  5EGE A;  1KH5 A;  3NKO A;  2W5S A;  5L0K A;  3UO0 A;  1URB A;  1EW2 A;  2ANH A;  1URA A;  3E2D A;  1FSU A;  3NKM A;  4CXU A;  5IJS A;  3BDG B;  1E1Z P;  5L0B A;  3WAX A;  1Y6V A;  2D1G A;  2IUC B;  1ZEB A;  1B8J A;  4CXK A;  2GLQ A;  1KHL A;  3IGZ B;  2RH6 A;  2X98 A;  3UN3 A;  1AJC A;  1KHN A;  5LRM A;  4NWX A;  4ZGA A;  3DYC A;  3T02 A;  4TN0 A;  5LIA A;  3M8W A;  4UOR A;  4CXS A;  3SZY A;  5C66 A;  2GSN A;  5LQQ A;  4CYS A;  3M8Y A;  1SHN A;  1E33 P;  1EI6 A;  5HRT A;  4GTW A;  4LRD A;  4MY4 A;  3LXQ A;  4MHX A;  3ED4 A;  2VQR A;  3BDF A;  4B56 A;  1KH7 A;  5KXA A;  1ANI A;  3MK0 A;  3NKN A;  4LR2 A;  5DLV A;  3WAY A;  4UPK A;  5AJ9 A;  4ZG9 A;  5L0E A;  1ELY A;  2W8S A;  3IGY B;  1E2S P;  1ANJ A;  4LQY A;  4KJD A;  5INH A;  3IDD A;  3A52 A;  1E3C P;  4UPH A;  3DPC A;  4MIV A;  3T00 A;  3UN2 A;  1AUK A;  1N2L A;  4FDJ A;  5K4P A;  4KJG A;  1O99 A;  1AJB A;  1SHQ A;  3CMR A;  3WAW A;  4UOO A;  4LRB A;  3BDG A;  3NKP A;  3B5Q A;  1ALI A;  1Y7A A;  2IUC A;  1ELX A;  2W5W A;  3NVL A;  1HDH A;  4LRA A;  1EQJ A;  2XRG A;  1ALJ A;  1N2K A;  4KAV A;  2IFY A;  5DLT A;  4LR8 A;  5GRR A;  1ALK A;  3T01 A;  5LRN A;  1EW8 A;  4NWJ A;  2GA3 A;  1ED9 A;  1EW9 A;  3TG0 A;  3NKR A;  1P49 A;  4UPL A;  2W5X A;  2W8D A;  1ZEF A;  2W5V A;  5TJ3 A;  3SZZ A;  1ZED A;  2G9Y A;  2QZU A;  5DLW A;  4GTX A;  2W5Q A;  4ZG7 A;  3M8Z A;  2GSO A;  1ELZ A;  4FDI A;  4GTZ A;  4UPI A;  3WAV A;  3OT9 A;  3UNY A;  4GTY A;  5GOV A;  3BDH A;  4CYR A;  4LRC A; 
#chains in the Genus database with same CATH topology
 4LR7 A;  1HQA A;  1O98 A;  4LR9 A;  3KD8 A;  1KHJ A;  2ZKT A;  3Q3Q A;  3UN5 A;  4ZG6 A;  1HJK A;  1ALH A;  5IJQ A;  1K7H A;  3TWZ A;  3M7V A;  4UOP A;  2XR9 A;  4LRF A;  1AJD A;  3TX0 A;  2GSU A;  4KAY A;  1KH4 A;  4LRE A;  1ED8 A;  3NKQ A;  1KHK A;  1KH9 A;  2W5T A;  5EGH A;  3MK1 A;  1AJA A;  4QAX A;  4YR1 A;  4N7T A;  3WBH A;  1EJJ A;  3MK2 A;  2W5R A;  4KM4 A;  5EGE A;  1KH5 A;  3NKO A;  2W5S A;  5L0K A;  3UO0 A;  1URB A;  1EW2 A;  2ANH A;  1URA A;  3E2D A;  1FSU A;  3NKM A;  4CXU A;  5IJS A;  3BDG B;  1E1Z P;  5L0B A;  3WAX A;  1Y6V A;  2D1G A;  2IUC B;  1ZEB A;  1B8J A;  4CXK A;  2GLQ A;  1KHL A;  3IGZ B;  2RH6 A;  2X98 A;  3UN3 A;  1AJC A;  1KHN A;  5LRM A;  4NWX A;  4ZGA A;  3DYC A;  3T02 A;  4TN0 A;  5LIA A;  3M8W A;  4UOR A;  4CXS A;  3SZY A;  5C66 A;  2GSN A;  5LQQ A;  4CYS A;  3M8Y A;  1SHN A;  1E33 P;  1EI6 A;  5HRT A;  4GTW A;  4LRD A;  4MY4 A;  3LXQ A;  4MHX A;  3ED4 A;  2VQR A;  3BDF A;  4B56 A;  1KH7 A;  5KXA A;  1ANI A;  3MK0 A;  3NKN A;  4LR2 A;  5DLV A;  3WAY A;  4UPK A;  5AJ9 A;  4ZG9 A;  5L0E A;  1ELY A;  2W8S A;  3IGY B;  1E2S P;  1ANJ A;  4LQY A;  4KJD A;  5INH A;  3IDD A;  3A52 A;  1E3C P;  4UPH A;  3DPC A;  4MIV A;  3T00 A;  3UN2 A;  1AUK A;  1N2L A;  4FDJ A;  5K4P A;  4KJG A;  1O99 A;  1AJB A;  1SHQ A;  3CMR A;  3WAW A;  4UOO A;  4LRB A;  3BDG A;  3NKP A;  3B5Q A;  1ALI A;  1Y7A A;  2IUC A;  1ELX A;  2W5W A;  3NVL A;  1HDH A;  4LRA A;  1EQJ A;  2XRG A;  1ALJ A;  1N2K A;  4KAV A;  2IFY A;  5DLT A;  4LR8 A;  5GRR A;  1ALK A;  3T01 A;  5LRN A;  1EW8 A;  4NWJ A;  2GA3 A;  1ED9 A;  1EW9 A;  3TG0 A;  3NKR A;  1P49 A;  4UPL A;  2W5X A;  2W8D A;  1ZEF A;  2W5V A;  5TJ3 A;  3SZZ A;  1ZED A;  2G9Y A;  2QZU A;  5DLW A;  4GTX A;  2W5Q A;  4ZG7 A;  3M8Z A;  2GSO A;  1ELZ A;  4FDI A;  4GTZ A;  4UPI A;  3WAV A;  3OT9 A;  3UNY A;  4GTY A;  5GOV A;  3BDH A;  4CYR A;  4LRC A; 
#chains in the Genus database with same CATH homology
 4LR7 A;  1HQA A;  1O98 A;  4LR9 A;  3KD8 A;  1KHJ A;  2ZKT A;  3Q3Q A;  3UN5 A;  4ZG6 A;  1HJK A;  1ALH A;  5IJQ A;  1K7H A;  3TWZ A;  3M7V A;  4UOP A;  2XR9 A;  4LRF A;  1AJD A;  3TX0 A;  2GSU A;  4KAY A;  1KH4 A;  4LRE A;  1ED8 A;  3NKQ A;  1KHK A;  1KH9 A;  2W5T A;  5EGH A;  3MK1 A;  1AJA A;  4QAX A;  4YR1 A;  4N7T A;  3WBH A;  1EJJ A;  3MK2 A;  2W5R A;  4KM4 A;  5EGE A;  1KH5 A;  3NKO A;  2W5S A;  5L0K A;  3UO0 A;  1URB A;  1EW2 A;  2ANH A;  1URA A;  3E2D A;  1FSU A;  3NKM A;  4CXU A;  5IJS A;  3BDG B;  1E1Z P;  5L0B A;  3WAX A;  1Y6V A;  2D1G A;  2IUC B;  1ZEB A;  1B8J A;  4CXK A;  2GLQ A;  1KHL A;  3IGZ B;  2RH6 A;  2X98 A;  3UN3 A;  1AJC A;  1KHN A;  5LRM A;  4NWX A;  4ZGA A;  3DYC A;  3T02 A;  4TN0 A;  5LIA A;  3M8W A;  4UOR A;  4CXS A;  3SZY A;  5C66 A;  2GSN A;  5LQQ A;  4CYS A;  3M8Y A;  1SHN A;  1E33 P;  1EI6 A;  5HRT A;  4GTW A;  4LRD A;  4MY4 A;  3LXQ A;  4MHX A;  3ED4 A;  2VQR A;  3BDF A;  4B56 A;  1KH7 A;  5KXA A;  1ANI A;  3MK0 A;  3NKN A;  4LR2 A;  5DLV A;  3WAY A;  4UPK A;  5AJ9 A;  4ZG9 A;  5L0E A;  1ELY A;  2W8S A;  3IGY B;  1E2S P;  1ANJ A;  4LQY A;  4KJD A;  5INH A;  3IDD A;  3A52 A;  1E3C P;  4UPH A;  3DPC A;  4MIV A;  3T00 A;  3UN2 A;  1AUK A;  1N2L A;  4FDJ A;  5K4P A;  4KJG A;  1O99 A;  1AJB A;  1SHQ A;  3CMR A;  3WAW A;  4UOO A;  4LRB A;  3BDG A;  3NKP A;  3B5Q A;  1ALI A;  1Y7A A;  2IUC A;  1ELX A;  2W5W A;  3NVL A;  1HDH A;  4LRA A;  1EQJ A;  2XRG A;  1ALJ A;  1N2K A;  4KAV A;  2IFY A;  5DLT A;  4LR8 A;  5GRR A;  1ALK A;  3T01 A;  5LRN A;  1EW8 A;  4NWJ A;  2GA3 A;  1ED9 A;  1EW9 A;  3TG0 A;  3NKR A;  1P49 A;  4UPL A;  2W5X A;  2W8D A;  1ZEF A;  2W5V A;  5TJ3 A;  3SZZ A;  1ZED A;  2G9Y A;  2QZU A;  5DLW A;  4GTX A;  2W5Q A;  4ZG7 A;  3M8Z A;  2GSO A;  1ELZ A;  4FDI A;  4GTZ A;  4UPI A;  3WAV A;  3OT9 A;  3UNY A;  4GTY A;  5GOV A;  3BDH A;  4CYR A;  4LRC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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