1WOGA

Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
303
structure length
303
Chain Sequence
GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords agmatinase
publication title Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 114
structure length 303
sequence length 303
chains with identical sequence B, C, D, E, F
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.5.3.11: Agmatinase.
pdb deposition date 2004-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1wogA00
3E9BA 1P8MA 1P8QA 4IXVA 1CEVA 3CEVA 3E6VA 3MFWA 1TBJA 4RHIA 3KV2A 1WOHA 3E8QA 5HJAA 3LP7A 2CEVA 4Q3UA 3F80A 3LP4A 2EF4A 4Q41A 3M1RA 4GSVA 1P8NA 1TBLA 1T5FA 3RLAA 1HQXA 4IE2A 4CEVA 4ITYA 1P8SA 1GQ7A 4RHKA 4IU1A 4HZEA 1GQ6A 2AEBA 4MYLA 4Q3TA 2ZAVA 4IU5A 1T5GA 4HWWA 4DZ4A 4RHQA 5CEVA 4FCIA 1HQGA 1P8OA 1HQ5A 4GWDA 1T4TA 1T4PA 2PHAA 3MMRA 4Q3SA 4IE1A 2RLAA 3NIPA 2PLLA 4I06A 3THHA 3E8ZA 4IE3A 2PHOA 3MJLA 1WOIA 4Q40A 1PQ3A 3THEA 4Q3PA 4MXRA 5HJ9A 3SKKA 3GMZA 3TF3A 1XFKA 4Q3RC 2EIVA 3SJTA 2A0MA 3NIOA 4Q3VA 4MYFA 4Q42A 1HQFA 3TH7A 1P8PA 4G3HA 4MYNA 1T4SA 1P8RA 4FCKA 1T4RA 4GSZA 3MFVA 4GSMA 1ZPGA 1TA1A 3DJ8A 4HXQA 1TBHA 3GN0A 4GWCA 1WVAA 3E6KA 3THJA 4IXUA 3PZLA 4RHMA 5RLAA 4IU0A 1WOGA 2EF5A 4RHLA 4IU4A 3LHLA 1R1OA 3SL1A 4RHJA 1ZPEA 1HQHA 1D3VA 4Q3RA 1WVBA 3NIQA 4Q3QA 4RLAA 3SL0A 4MYKA 1RLAA
chains in the Genus database with same CATH superfamily
3E9BA 1P8MA 2V5XA 1P8QA 4IXVA 5DC8A 1CEVA 3MAXA 5EF7A 5EEMA 3CEVA 3E6VA 5D1DA 3MFWA 4QA2A 1TBJA 5G1CA 5EFJD 1W22A 2VQVA 4BZ7A 5EFKB 4RHIA 3KV2A 1WOHA 3E8QA 5HJAA 3Q9FA 3LP7A 1C3SA 5EEKA 2CEVA 5LI3A 5A2SA 4Q3UA 4RN0A 3EW8A 3F80A 2EF4A 3LP4A 2VCGA 5FUEA 3M1RA 5G13A 3SFHA 4Q41A 4ZUQA 4QA1A 1T64A 4GSVA 4QA0A 4LXZA 5IWGA 5JI5A 4CBYA 1C3PA 1P8NA 1TBLA 1T5FA 2VQWG 3RLAA 5DC5A 5G1BA 5G0IA 1HQXA 4IE2A 5G17A 3Q9CA 4CEVA 5D1BA 4ITYA 1P8SA 1GQ7A 1ZZ1A 4RHKA 4IU1A 4HZEA 5THUA 4BZ8A 1GQ6A 2AEBA 4RN1A 4MYLA 4Q3TA 2ZAVA 4QA7A 4QA4A 5G0GA 2V5WA 5G0YA 4IU5A 5D1CA 3F06A 1T5GA 4HWWA 4ZUOA 4DZ4A 4QA6A 4RHQA 4LY1A 5CEVA 4FCIA 1HQGA 1P8OA 1HQ5A 3MENA 4GWDA 4QA5A 1T4TA 4QA3A 5G0XA 4BZ6A 1T4PA 2PHAA 2VQMA 3MMRA 4Q3SA 5G10A 4IE1A 2RLAA 4A69A 4CQFA 5G3WA 3MZ3A 3NIPA 5EFBD 2PLLA 5THTA 4I06A 3MZ7A 3THHA 3Q9BA 4ZURA 4CBTA 1C3RA 4BKXB 3SFFA 3E8ZA 4IE3A 5G1AA 2PHOA 3MJLA 4BZ9A 3EZTA 2VQQA 1WOIA 4Q40A 3C0YA 1PQ3A 3THEA 4Q3PA 4MXRA 5HJ9A 3SKKA 3GMZA 4ZUPA 3TF3A 3C10A 1XFKA 1ZZ3A 4Q3RC 2EIVA 2VQJA 3SJTA 2A0MA 3NIOA 4Q3VA 4MYFA 4ZUNA 5G0JA 5ICNB 5G12A 4Q42A 1HQFA 1T67A 3TH7A 1P8PA 4G3HA 4MYNA 1T4SA 1P8RA 3EWFA 1VKGA 5EEIA 3F0RA 5DC6A 5EFGA 4FCKA 1T4RA 5EF8A 5G0HA 4GSZA 3MFVA 5THVA 2GH6A 3F07A 4GSMA 1ZPGA 1ZZ0A 3C0ZA 4RN2A 1TA1A 3DJ8A 4BZ5A 4HXQA 1TBHA 1T69A 3GN0A 4GWCA 1WVAA 3E6KA 3THJA 4IXUA 3PZLA 4RHMA 5EENA 5RLAA 5BWZA 4IU0A 5EFNA 5G11A 1WOGA 3ZNRA 2EF5A 4RHLA 4IU4A 3EZPA 3LHLA 3MZ4A 5DC7A 1R1OA 3SL1A 4RHJA 5EEFA 3ZNSA 1ZPEA 3RQDA 3Q9EA 4ZUMA 1HQHA 1D3VA 2VQOA 4Q3RA 1WVBA 5THSA 3NIQA 3MZ6A 4Q3QA 4RLAA 4MYKA 5IX0A 3SL0A 5EFHA 1RLAA 5FCWA
chains in the Genus database with same CATH topology
3E9BA 1P8MA 1P8QA 4IXVA 1CEVA 3CEVA 3E6VA 3MFWA 1TBJA 4RHIA 3KV2A 1WOHA 3E8QA 5HJAA 3LP7A 2CEVA 4Q3UA 3F80A 3LP4A 2EF4A 4Q41A 3M1RA 4GSVA 1P8NA 1TBLA 1T5FA 3RLAA 1HQXA 4IE2A 4CEVA 4ITYA 1P8SA 1GQ7A 4RHKA 4IU1A 4HZEA 1GQ6A 2AEBA 4MYLA 4Q3TA 2ZAVA 4IU5A 1T5GA 4HWWA 4DZ4A 4RHQA 5CEVA 4FCIA 1HQGA 1P8OA 1HQ5A 4GWDA 1T4TA 1T4PA 2PHAA 3MMRA 4Q3SA 4IE1A 2RLAA 3NIPA 2PLLA 4I06A 3THHA 3E8ZA 4IE3A 2PHOA 3MJLA 1WOIA 4Q40A 1PQ3A 3THEA 4Q3PA 4MXRA 5HJ9A 3SKKA 3GMZA 3TF3A 1XFKA 4Q3RC 2EIVA 3SJTA 2A0MA 3NIOA 4Q3VA 4MYFA 4Q42A 1HQFA 3TH7A 1P8PA 4G3HA 4MYNA 1T4SA 1P8RA 4FCKA 1T4RA 4GSZA 3MFVA 4GSMA 1ZPGA 1TA1A 3DJ8A 4HXQA 1TBHA 3GN0A 4GWCA 1WVAA 3E6KA 3THJA 4IXUA 3PZLA 4RHMA 5RLAA 4IU0A 1WOGA 2EF5A 4RHLA 4IU4A 3LHLA 1R1OA 3SL1A 4RHJA 1ZPEA 1HQHA 1D3VA 4Q3RA 1WVBA 3NIQA 4Q3QA 4RLAA 3SL0A 4MYKA 1RLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E9B A;  1P8M A;  1P8Q A;  4IXV A;  1CEV A;  3CEV A;  3E6V A;  3MFW A;  1TBJ A;  4RHI A;  3KV2 A;  1WOH A;  3E8Q A;  5HJA A;  3LP7 A;  2CEV A;  4Q3U A;  3F80 A;  3LP4 A;  2EF4 A;  4Q41 A;  3M1R A;  4GSV A;  1P8N A;  1TBL A;  1T5F A;  3RLA A;  1HQX A;  4IE2 A;  4CEV A;  4ITY A;  1P8S A;  1GQ7 A;  4RHK A;  4IU1 A;  4HZE A;  1GQ6 A;  2AEB A;  4MYL A;  4Q3T A;  2ZAV A;  4IU5 A;  1T5G A;  4HWW A;  4DZ4 A;  4RHQ A;  5CEV A;  4FCI A;  1HQG A;  1P8O A;  1HQ5 A;  4GWD A;  1T4T A;  1T4P A;  2PHA A;  3MMR A;  4Q3S A;  4IE1 A;  2RLA A;  3NIP A;  2PLL A;  4I06 A;  3THH A;  3E8Z A;  4IE3 A;  2PHO A;  3MJL A;  1WOI A;  4Q40 A;  1PQ3 A;  3THE A;  4Q3P A;  4MXR A;  5HJ9 A;  3SKK A;  3GMZ A;  3TF3 A;  1XFK A;  4Q3R C;  2EIV A;  3SJT A;  2A0M A;  3NIO A;  4Q3V A;  4MYF A;  4Q42 A;  1HQF A;  3TH7 A;  1P8P A;  4G3H A;  4MYN A;  1T4S A;  1P8R A;  4FCK A;  1T4R A;  4GSZ A;  3MFV A;  4GSM A;  1ZPG A;  1TA1 A;  3DJ8 A;  4HXQ A;  1TBH A;  3GN0 A;  4GWC A;  1WVA A;  3E6K A;  3THJ A;  4IXU A;  3PZL A;  4RHM A;  5RLA A;  4IU0 A;  1WOG A;  2EF5 A;  4RHL A;  4IU4 A;  3LHL A;  1R1O A;  3SL1 A;  4RHJ A;  1ZPE A;  1HQH A;  1D3V A;  4Q3R A;  1WVB A;  3NIQ A;  4Q3Q A;  4RLA A;  3SL0 A;  4MYK A;  1RLA A; 
#chains in the Genus database with same CATH topology
 3E9B A;  1P8M A;  2V5X A;  1P8Q A;  4IXV A;  5DC8 A;  1CEV A;  3MAX A;  5EF7 A;  5EEM A;  3CEV A;  3E6V A;  5D1D A;  3MFW A;  4QA2 A;  1TBJ A;  5G1C A;  5EFJ D;  1W22 A;  2VQV A;  4BZ7 A;  5EFK B;  4RHI A;  3KV2 A;  1WOH A;  3E8Q A;  5HJA A;  3Q9F A;  3LP7 A;  1C3S A;  5EEK A;  2CEV A;  5LI3 A;  5A2S A;  4Q3U A;  4RN0 A;  3EW8 A;  3F80 A;  2EF4 A;  3LP4 A;  2VCG A;  5FUE A;  3M1R A;  5G13 A;  3SFH A;  4Q41 A;  4ZUQ A;  4QA1 A;  1T64 A;  4GSV A;  4QA0 A;  4LXZ A;  5IWG A;  5JI5 A;  4CBY A;  1C3P A;  1P8N A;  1TBL A;  1T5F A;  2VQW G;  3RLA A;  5DC5 A;  5G1B A;  5G0I A;  1HQX A;  4IE2 A;  5G17 A;  3Q9C A;  4CEV A;  5D1B A;  4ITY A;  1P8S A;  1GQ7 A;  1ZZ1 A;  4RHK A;  4IU1 A;  4HZE A;  5THU A;  4BZ8 A;  1GQ6 A;  2AEB A;  4RN1 A;  4MYL A;  4Q3T A;  2ZAV A;  4QA7 A;  4QA4 A;  5G0G A;  2V5W A;  5G0Y A;  4IU5 A;  5D1C A;  3F06 A;  1T5G A;  4HWW A;  4ZUO A;  4DZ4 A;  4QA6 A;  4RHQ A;  4LY1 A;  5CEV A;  4FCI A;  1HQG A;  1P8O A;  1HQ5 A;  3MEN A;  4GWD A;  4QA5 A;  1T4T A;  4QA3 A;  5G0X A;  4BZ6 A;  1T4P A;  2PHA A;  2VQM A;  3MMR A;  4Q3S A;  5G10 A;  4IE1 A;  2RLA A;  4A69 A;  4CQF A;  5G3W A;  3MZ3 A;  3NIP A;  5EFB D;  2PLL A;  5THT A;  4I06 A;  3MZ7 A;  3THH A;  3Q9B A;  4ZUR A;  4CBT A;  1C3R A;  4BKX B;  3SFF A;  3E8Z A;  4IE3 A;  5G1A A;  2PHO A;  3MJL A;  4BZ9 A;  3EZT A;  2VQQ A;  1WOI A;  4Q40 A;  3C0Y A;  1PQ3 A;  3THE A;  4Q3P A;  4MXR A;  5HJ9 A;  3SKK A;  3GMZ A;  4ZUP A;  3TF3 A;  3C10 A;  1XFK A;  1ZZ3 A;  4Q3R C;  2EIV A;  2VQJ A;  3SJT A;  2A0M A;  3NIO A;  4Q3V A;  4MYF A;  4ZUN A;  5G0J A;  5ICN B;  5G12 A;  4Q42 A;  1HQF A;  1T67 A;  3TH7 A;  1P8P A;  4G3H A;  4MYN A;  1T4S A;  1P8R A;  3EWF A;  1VKG A;  5EEI A;  3F0R A;  5DC6 A;  5EFG A;  4FCK A;  1T4R A;  5EF8 A;  5G0H A;  4GSZ A;  3MFV A;  5THV A;  2GH6 A;  3F07 A;  4GSM A;  1ZPG A;  1ZZ0 A;  3C0Z A;  4RN2 A;  1TA1 A;  3DJ8 A;  4BZ5 A;  4HXQ A;  1TBH A;  1T69 A;  3GN0 A;  4GWC A;  1WVA A;  3E6K A;  3THJ A;  4IXU A;  3PZL A;  4RHM A;  5EEN A;  5RLA A;  5BWZ A;  4IU0 A;  5EFN A;  5G11 A;  1WOG A;  3ZNR A;  2EF5 A;  4RHL A;  4IU4 A;  3EZP A;  3LHL A;  3MZ4 A;  5DC7 A;  1R1O A;  3SL1 A;  4RHJ A;  5EEF A;  3ZNS A;  1ZPE A;  3RQD A;  3Q9E A;  4ZUM A;  1HQH A;  1D3V A;  2VQO A;  4Q3R A;  1WVB A;  5THS A;  3NIQ A;  3MZ6 A;  4Q3Q A;  4RLA A;  4MYK A;  5IX0 A;  3SL0 A;  5EFH A;  1RLA A;  5FCW A; 
#chains in the Genus database with same CATH homology
 3E9B A;  1P8M A;  1P8Q A;  4IXV A;  1CEV A;  3CEV A;  3E6V A;  3MFW A;  1TBJ A;  4RHI A;  3KV2 A;  1WOH A;  3E8Q A;  5HJA A;  3LP7 A;  2CEV A;  4Q3U A;  3F80 A;  3LP4 A;  2EF4 A;  4Q41 A;  3M1R A;  4GSV A;  1P8N A;  1TBL A;  1T5F A;  3RLA A;  1HQX A;  4IE2 A;  4CEV A;  4ITY A;  1P8S A;  1GQ7 A;  4RHK A;  4IU1 A;  4HZE A;  1GQ6 A;  2AEB A;  4MYL A;  4Q3T A;  2ZAV A;  4IU5 A;  1T5G A;  4HWW A;  4DZ4 A;  4RHQ A;  5CEV A;  4FCI A;  1HQG A;  1P8O A;  1HQ5 A;  4GWD A;  1T4T A;  1T4P A;  2PHA A;  3MMR A;  4Q3S A;  4IE1 A;  2RLA A;  3NIP A;  2PLL A;  4I06 A;  3THH A;  3E8Z A;  4IE3 A;  2PHO A;  3MJL A;  1WOI A;  4Q40 A;  1PQ3 A;  3THE A;  4Q3P A;  4MXR A;  5HJ9 A;  3SKK A;  3GMZ A;  3TF3 A;  1XFK A;  4Q3R C;  2EIV A;  3SJT A;  2A0M A;  3NIO A;  4Q3V A;  4MYF A;  4Q42 A;  1HQF A;  3TH7 A;  1P8P A;  4G3H A;  4MYN A;  1T4S A;  1P8R A;  4FCK A;  1T4R A;  4GSZ A;  3MFV A;  4GSM A;  1ZPG A;  1TA1 A;  3DJ8 A;  4HXQ A;  1TBH A;  3GN0 A;  4GWC A;  1WVA A;  3E6K A;  3THJ A;  4IXU A;  3PZL A;  4RHM A;  5RLA A;  4IU0 A;  1WOG A;  2EF5 A;  4RHL A;  4IU4 A;  3LHL A;  1R1O A;  3SL1 A;  4RHJ A;  1ZPE A;  1HQH A;  1D3V A;  4Q3R A;  1WVB A;  3NIQ A;  4Q3Q A;  4RLA A;  3SL0 A;  4MYK A;  1RLA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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