1WOHA

Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
303
structure length
303
Chain Sequence
GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords agmatinase
publication title Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 114
structure length 303
sequence length 303
chains with identical sequence B, C, D, E, F
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.5.3.11: Agmatinase.
pdb deposition date 2004-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1wohA00
3TF3A 1T5FA 4MXRA 1P8OA 4FCKA 4IXUA 4RHJA 1P8MA 1PQ3A 2EF4A 5RLAA 1TA1A 1ZPEA 2PHAA 4RHKA 3E8ZA 4Q3UA 3SL1A 3M1RA 1P8QA 4IU4A 4IU5A 1T4SA 3E6VA 1WVBA 4FCIA 4IU0A 1WOGA 1HQHA 2EF5A 1T4RA 3DJ8A 3NIPA 1TBJA 3E6KA 4Q3RA 4RHMA 5CEVA 4Q42A 4MYKA 4Q3RC 1P8NA 3RLAA 1P8RA 1XFKA 1P8SA 3F80A 2CEVA 1HQFA 2ZAVA 1HQGA 3MFWA 4Q40A 3MMRA 4Q3QA 1D3VA 4CEVA 3THEA 3MFVA 4ITYA 4Q3VA 4RLAA 3LP7A 3LHLA 4IE2A 4HXQA 3TH7A 1P8PA 1WVAA 4IE3A 3E8QA 1CEVA 1T5GA 4Q3TA 2A0MA 4RHLA 4Q3SA 1WOIA 3MJLA 4G3HA 4HZEA 4Q41A 4MYLA 4MYFA 2RLAA 3LP4A 4MYNA 1ZPGA 4I06A 3CEVA 4IE1A 5HJAA 1TBLA 1WOHA 3E9BA 1R1OA 1RLAA 3KV2A 4GSVA 1GQ7A 3GMZA 4GWDA 1T4TA 4Q3PA 4RHQA 2AEBA 3THHA 4HWWA 3GN0A 5HJ9A 1HQ5A 4IU1A 4DZ4A 2PLLA 2PHOA 3SL0A 4GSZA 4IXVA 1HQXA 4GWCA 1TBHA 4RHIA 3NIOA 1T4PA 3SJTA 3PZLA 1GQ6A 2EIVA 3THJA 3NIQA 3SKKA 4GSMA
chains in the Genus database with same CATH superfamily
3TF3A 3C10A 1T5FA 4MXRA 1P8OA 2V5WA 5EFGA 4FCKA 4ZUPA 3C0ZA 3Q9EA 3Q9FA 3ZNRA 5EFJD 1T64A 4IXUA 5G10A 5IX0A 1W22A 3Q9BA 4RHJA 1P8MA 1PQ3A 2EF4A 3F07A 5RLAA 4BKXB 4QA0A 1TA1A 3MZ4A 1ZPEA 2PHAA 4RHKA 4BZ6A 3E8ZA 4Q3UA 3SL1A 3M1RA 5ICNB 1P8QA 4IU4A 1ZZ3A 4IU5A 5G11A 1T4SA 3E6VA 4BZ8A 1WVBA 4FCIA 5DC6A 5D1DA 4ZUOA 4IU0A 1WOGA 5THUA 1HQHA 2EF5A 5BWZA 1T4RA 3DJ8A 3MAXA 3NIPA 3C0YA 1TBJA 3E6KA 5DC8A 4Q3RA 4RHMA 5CEVA 4Q42A 3MZ3A 4MYKA 4Q3RC 4QA4A 1P8NA 3RLAA 1P8RA 5D1BA 4CQFA 1XFKA 3Q9CA 1P8SA 3RQDA 5EENA 3F80A 2CEVA 5EEFA 3EZTA 4ZURA 1HQFA 5G0JA 2ZAVA 5LI3A 1HQGA 3MFWA 3F0RA 4Q40A 3MMRA 5G0HA 3F06A 1D3VA 4Q3QA 4CEVA 3THEA 1C3RA 4QA5A 3MFVA 5EF7A 4ITYA 4Q3VA 4RLAA 3LP7A 2VCGA 3LHLA 5IWGA 5EFKB 4IE2A 4HXQA 5EEIA 3TH7A 1P8PA 5DC5A 3MZ7A 3SFHA 1WVAA 4IE3A 5G1CA 5G17A 3E8QA 1CEVA 4QA6A 1T5GA 5EFBD 4Q3TA 5G12A 4A69A 5THVA 1T69A 5G0YA 2A0MA 4RHLA 4Q3SA 4RN1A 5EF8A 4LXZA 5EEKA 1WOIA 3MJLA 4BZ7A 4G3HA 5THSA 4ZUNA 3MZ6A 5THTA 4HZEA 4RN2A 5D1CA 4Q41A 2V5XA 4MYLA 4MYFA 2RLAA 3LP4A 3SFFA 4MYNA 1ZPGA 4I06A 3CEVA 4IE1A 4QA7A 5G1AA 5HJAA 2VQMA 3EWFA 1TBLA 3EW8A 1WOHA 3E9BA 1R1OA 1RLAA 5G0GA 5FCWA 1T67A 3KV2A 1ZZ0A 4LY1A 1C3SA 4GSVA 5EEMA 3ZNSA 2GH6A 4QA3A 1GQ7A 3GMZA 4QA1A 4BZ5A 4BZ9A 4GWDA 1C3PA 1VKGA 5G0XA 1T4TA 2VQWG 4Q3PA 3MENA 2AEBA 4RHQA 5G13A 4CBYA 3THHA 4HWWA 3GN0A 5HJ9A 5EFNA 4QA2A 1HQ5A 5JI5A 2VQJA 4IU1A 2VQVA 4DZ4A 2PLLA 3EZPA 5FUEA 2PHOA 3SL0A 4GSZA 4IXVA 5G3WA 4CBTA 1HQXA 4GWCA 5G0IA 1TBHA 4RHIA 4RN0A 5DC7A 3NIOA 2VQQA 1T4PA 3SJTA 1ZZ1A 4ZUQA 5G1BA 3PZLA 1GQ6A 2VQOA 2EIVA 5EFHA 4ZUMA 3THJA 5A2SA 3NIQA 3SKKA 4GSMA
chains in the Genus database with same CATH topology
3TF3A 1T5FA 4MXRA 1P8OA 4FCKA 4IXUA 4RHJA 1P8MA 1PQ3A 2EF4A 5RLAA 1TA1A 1ZPEA 2PHAA 4RHKA 3E8ZA 4Q3UA 3SL1A 3M1RA 1P8QA 4IU4A 4IU5A 1T4SA 3E6VA 1WVBA 4FCIA 4IU0A 1WOGA 1HQHA 2EF5A 1T4RA 3DJ8A 3NIPA 1TBJA 3E6KA 4Q3RA 4RHMA 5CEVA 4Q42A 4MYKA 4Q3RC 1P8NA 3RLAA 1P8RA 1XFKA 1P8SA 3F80A 2CEVA 1HQFA 2ZAVA 1HQGA 3MFWA 4Q40A 3MMRA 4Q3QA 1D3VA 4CEVA 3THEA 3MFVA 4ITYA 4Q3VA 4RLAA 3LP7A 3LHLA 4IE2A 4HXQA 3TH7A 1P8PA 1WVAA 4IE3A 3E8QA 1CEVA 1T5GA 4Q3TA 2A0MA 4RHLA 4Q3SA 1WOIA 3MJLA 4G3HA 4HZEA 4Q41A 4MYLA 4MYFA 2RLAA 3LP4A 4MYNA 1ZPGA 4I06A 3CEVA 4IE1A 5HJAA 1TBLA 1WOHA 3E9BA 1R1OA 1RLAA 3KV2A 4GSVA 1GQ7A 3GMZA 4GWDA 1T4TA 4Q3PA 4RHQA 2AEBA 3THHA 4HWWA 3GN0A 5HJ9A 1HQ5A 4IU1A 4DZ4A 2PLLA 2PHOA 3SL0A 4GSZA 4IXVA 1HQXA 4GWCA 1TBHA 4RHIA 3NIOA 1T4PA 3SJTA 3PZLA 1GQ6A 2EIVA 3THJA 3NIQA 3SKKA 4GSMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TF3 A;  1T5F A;  4MXR A;  1P8O A;  4FCK A;  4IXU A;  4RHJ A;  1P8M A;  1PQ3 A;  2EF4 A;  5RLA A;  1TA1 A;  1ZPE A;  2PHA A;  4RHK A;  3E8Z A;  4Q3U A;  3SL1 A;  3M1R A;  1P8Q A;  4IU4 A;  4IU5 A;  1T4S A;  3E6V A;  1WVB A;  4FCI A;  4IU0 A;  1WOG A;  1HQH A;  2EF5 A;  1T4R A;  3DJ8 A;  3NIP A;  1TBJ A;  3E6K A;  4Q3R A;  4RHM A;  5CEV A;  4Q42 A;  4MYK A;  4Q3R C;  1P8N A;  3RLA A;  1P8R A;  1XFK A;  1P8S A;  3F80 A;  2CEV A;  1HQF A;  2ZAV A;  1HQG A;  3MFW A;  4Q40 A;  3MMR A;  4Q3Q A;  1D3V A;  4CEV A;  3THE A;  3MFV A;  4ITY A;  4Q3V A;  4RLA A;  3LP7 A;  3LHL A;  4IE2 A;  4HXQ A;  3TH7 A;  1P8P A;  1WVA A;  4IE3 A;  3E8Q A;  1CEV A;  1T5G A;  4Q3T A;  2A0M A;  4RHL A;  4Q3S A;  1WOI A;  3MJL A;  4G3H A;  4HZE A;  4Q41 A;  4MYL A;  4MYF A;  2RLA A;  3LP4 A;  4MYN A;  1ZPG A;  4I06 A;  3CEV A;  4IE1 A;  5HJA A;  1TBL A;  1WOH A;  3E9B A;  1R1O A;  1RLA A;  3KV2 A;  4GSV A;  1GQ7 A;  3GMZ A;  4GWD A;  1T4T A;  4Q3P A;  4RHQ A;  2AEB A;  3THH A;  4HWW A;  3GN0 A;  5HJ9 A;  1HQ5 A;  4IU1 A;  4DZ4 A;  2PLL A;  2PHO A;  3SL0 A;  4GSZ A;  4IXV A;  1HQX A;  4GWC A;  1TBH A;  4RHI A;  3NIO A;  1T4P A;  3SJT A;  3PZL A;  1GQ6 A;  2EIV A;  3THJ A;  3NIQ A;  3SKK A;  4GSM A; 
#chains in the Genus database with same CATH topology
 3TF3 A;  3C10 A;  1T5F A;  4MXR A;  1P8O A;  2V5W A;  5EFG A;  4FCK A;  4ZUP A;  3C0Z A;  3Q9E A;  3Q9F A;  3ZNR A;  5EFJ D;  1T64 A;  4IXU A;  5G10 A;  5IX0 A;  1W22 A;  3Q9B A;  4RHJ A;  1P8M A;  1PQ3 A;  2EF4 A;  3F07 A;  5RLA A;  4BKX B;  4QA0 A;  1TA1 A;  3MZ4 A;  1ZPE A;  2PHA A;  4RHK A;  4BZ6 A;  3E8Z A;  4Q3U A;  3SL1 A;  3M1R A;  5ICN B;  1P8Q A;  4IU4 A;  1ZZ3 A;  4IU5 A;  5G11 A;  1T4S A;  3E6V A;  4BZ8 A;  1WVB A;  4FCI A;  5DC6 A;  5D1D A;  4ZUO A;  4IU0 A;  1WOG A;  5THU A;  1HQH A;  2EF5 A;  5BWZ A;  1T4R A;  3DJ8 A;  3MAX A;  3NIP A;  3C0Y A;  1TBJ A;  3E6K A;  5DC8 A;  4Q3R A;  4RHM A;  5CEV A;  4Q42 A;  3MZ3 A;  4MYK A;  4Q3R C;  4QA4 A;  1P8N A;  3RLA A;  1P8R A;  5D1B A;  4CQF A;  1XFK A;  3Q9C A;  1P8S A;  3RQD A;  5EEN A;  3F80 A;  2CEV A;  5EEF A;  3EZT A;  4ZUR A;  1HQF A;  5G0J A;  2ZAV A;  5LI3 A;  1HQG A;  3MFW A;  3F0R A;  4Q40 A;  3MMR A;  5G0H A;  3F06 A;  1D3V A;  4Q3Q A;  4CEV A;  3THE A;  1C3R A;  4QA5 A;  3MFV A;  5EF7 A;  4ITY A;  4Q3V A;  4RLA A;  3LP7 A;  2VCG A;  3LHL A;  5IWG A;  5EFK B;  4IE2 A;  4HXQ A;  5EEI A;  3TH7 A;  1P8P A;  5DC5 A;  3MZ7 A;  3SFH A;  1WVA A;  4IE3 A;  5G1C A;  5G17 A;  3E8Q A;  1CEV A;  4QA6 A;  1T5G A;  5EFB D;  4Q3T A;  5G12 A;  4A69 A;  5THV A;  1T69 A;  5G0Y A;  2A0M A;  4RHL A;  4Q3S A;  4RN1 A;  5EF8 A;  4LXZ A;  5EEK A;  1WOI A;  3MJL A;  4BZ7 A;  4G3H A;  5THS A;  4ZUN A;  3MZ6 A;  5THT A;  4HZE A;  4RN2 A;  5D1C A;  4Q41 A;  2V5X A;  4MYL A;  4MYF A;  2RLA A;  3LP4 A;  3SFF A;  4MYN A;  1ZPG A;  4I06 A;  3CEV A;  4IE1 A;  4QA7 A;  5G1A A;  5HJA A;  2VQM A;  3EWF A;  1TBL A;  3EW8 A;  1WOH A;  3E9B A;  1R1O A;  1RLA A;  5G0G A;  5FCW A;  1T67 A;  3KV2 A;  1ZZ0 A;  4LY1 A;  1C3S A;  4GSV A;  5EEM A;  3ZNS A;  2GH6 A;  4QA3 A;  1GQ7 A;  3GMZ A;  4QA1 A;  4BZ5 A;  4BZ9 A;  4GWD A;  1C3P A;  1VKG A;  5G0X A;  1T4T A;  2VQW G;  4Q3P A;  3MEN A;  2AEB A;  4RHQ A;  5G13 A;  4CBY A;  3THH A;  4HWW A;  3GN0 A;  5HJ9 A;  5EFN A;  4QA2 A;  1HQ5 A;  5JI5 A;  2VQJ A;  4IU1 A;  2VQV A;  4DZ4 A;  2PLL A;  3EZP A;  5FUE A;  2PHO A;  3SL0 A;  4GSZ A;  4IXV A;  5G3W A;  4CBT A;  1HQX A;  4GWC A;  5G0I A;  1TBH A;  4RHI A;  4RN0 A;  5DC7 A;  3NIO A;  2VQQ A;  1T4P A;  3SJT A;  1ZZ1 A;  4ZUQ A;  5G1B A;  3PZL A;  1GQ6 A;  2VQO A;  2EIV A;  5EFH A;  4ZUM A;  3THJ A;  5A2S A;  3NIQ A;  3SKK A;  4GSM A; 
#chains in the Genus database with same CATH homology
 3TF3 A;  1T5F A;  4MXR A;  1P8O A;  4FCK A;  4IXU A;  4RHJ A;  1P8M A;  1PQ3 A;  2EF4 A;  5RLA A;  1TA1 A;  1ZPE A;  2PHA A;  4RHK A;  3E8Z A;  4Q3U A;  3SL1 A;  3M1R A;  1P8Q A;  4IU4 A;  4IU5 A;  1T4S A;  3E6V A;  1WVB A;  4FCI A;  4IU0 A;  1WOG A;  1HQH A;  2EF5 A;  1T4R A;  3DJ8 A;  3NIP A;  1TBJ A;  3E6K A;  4Q3R A;  4RHM A;  5CEV A;  4Q42 A;  4MYK A;  4Q3R C;  1P8N A;  3RLA A;  1P8R A;  1XFK A;  1P8S A;  3F80 A;  2CEV A;  1HQF A;  2ZAV A;  1HQG A;  3MFW A;  4Q40 A;  3MMR A;  4Q3Q A;  1D3V A;  4CEV A;  3THE A;  3MFV A;  4ITY A;  4Q3V A;  4RLA A;  3LP7 A;  3LHL A;  4IE2 A;  4HXQ A;  3TH7 A;  1P8P A;  1WVA A;  4IE3 A;  3E8Q A;  1CEV A;  1T5G A;  4Q3T A;  2A0M A;  4RHL A;  4Q3S A;  1WOI A;  3MJL A;  4G3H A;  4HZE A;  4Q41 A;  4MYL A;  4MYF A;  2RLA A;  3LP4 A;  4MYN A;  1ZPG A;  4I06 A;  3CEV A;  4IE1 A;  5HJA A;  1TBL A;  1WOH A;  3E9B A;  1R1O A;  1RLA A;  3KV2 A;  4GSV A;  1GQ7 A;  3GMZ A;  4GWD A;  1T4T A;  4Q3P A;  4RHQ A;  2AEB A;  3THH A;  4HWW A;  3GN0 A;  5HJ9 A;  1HQ5 A;  4IU1 A;  4DZ4 A;  2PLL A;  2PHO A;  3SL0 A;  4GSZ A;  4IXV A;  1HQX A;  4GWC A;  1TBH A;  4RHI A;  3NIO A;  1T4P A;  3SJT A;  3PZL A;  1GQ6 A;  2EIV A;  3THJ A;  3NIQ A;  3SKK A;  4GSM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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