1WOIA

Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
303
structure length
303
Chain Sequence
GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords agmatinase
publication title Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 114
structure length 303
sequence length 303
chains with identical sequence B, C, D, E, F
other databases KnotProt 2.0: S +31 +31 +31
ec nomenclature ec 3.5.3.11: Agmatinase.
pdb deposition date 2004-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1woiA00
4GSMA 3MMRA 3DJ8A 4MYFA 3F80A 1HQGA 2CEVA 2RLAA 4IU1A 1T4SA 2PLLA 2ZAVA 1HQHA 3NIPA 5HJ9A 4DZ4A 4G3HA 3M1RA 4HWWA 4GSVA 4FCIA 4IU0A 3E8ZA 3TH7A 4RHQA 1GQ6A 3NIQA 5HJAA 5RLAA 4IE1A 1CEVA 1D3VA 4IE2A 4HXQA 3LHLA 4Q42A 3SKKA 3CEVA 1WOIA 3TF3A 1P8QA 3PZLA 4RHIA 1GQ7A 2EF4A 4Q3UA 4CEVA 1P8MA 4Q3RC 2PHAA 3E9BA 4IU4A 3MFVA 1P8NA 3KV2A 3RLAA 4IXVA 4Q3VA 1RLAA 4MYLA 1TBLA 3E6VA 4Q3SA 1XFKA 1R1OA 2EIVA 4MXRA 1P8RA 4Q41A 1ZPEA 1T4TA 4RLAA 3THJA 1PQ3A 1P8PA 1HQXA 4FCKA 4GWDA 4Q3TA 4RHLA 3THHA 4IXUA 4MYKA 3MFWA 3GMZA 3SL0A 1TBHA 4IE3A 3NIOA 1P8OA 5CEVA 1WOHA 1ZPGA 3MJLA 1T5GA 4I06A 1T4RA 4HZEA 2A0MA 4Q40A 1WVAA 3SJTA 4ITYA 4RHKA 4RHJA 3LP4A 3GN0A 1T4PA 1TA1A 4RHMA 4MYNA 4Q3RA 2AEBA 3SL1A 1TBJA 3LP7A 4Q3QA 3THEA 4GWCA 3E8QA 1WVBA 1HQFA 1P8SA 2EF5A 4GSZA 1HQ5A 4Q3PA 2PHOA 1WOGA 3E6KA 4IU5A 1T5FA
chains in the Genus database with same CATH superfamily
5EEFA 4GSMA 3MMRA 3MZ7A 3DJ8A 3EZPA 4MYFA 3F80A 5G0YA 3C0YA 5G0HA 1HQGA 2CEVA 4BKXB 5G0JA 2RLAA 4IU1A 5EFNA 3ZNSA 1T4SA 3MZ3A 2PLLA 3F06A 2ZAVA 1HQHA 5EFJD 3NIPA 5HJ9A 4DZ4A 1T67A 3SFFA 4G3HA 2GH6A 4ZUOA 3MZ6A 5DC8A 3M1RA 4HWWA 4GSVA 4FCIA 3C10A 4IU0A 3E8ZA 4BZ6A 3TH7A 4RHQA 1GQ6A 1VKGA 2VQVA 3NIQA 4ZUPA 5HJAA 5THSA 4ZUMA 5RLAA 4IE1A 1CEVA 4BZ8A 5G1CA 1D3VA 4IE2A 5DC5A 4HXQA 4A69A 5EF7A 3F0RA 3LHLA 4RN1A 4Q42A 5D1DA 3CEVA 5G3WA 1C3RA 5IWGA 3SKKA 1WOIA 4BZ9A 2VQJA 3F07A 3TF3A 1P8QA 3PZLA 4RHIA 1GQ7A 2EF4A 4Q3UA 5FUEA 3ZNRA 1P8MA 4Q3RC 2PHAA 3E9BA 4IU4A 5G0GA 4CEVA 3MFVA 1P8NA 5DC7A 4BZ5A 3KV2A 5EEMA 4IXVA 1C3PA 4Q3VA 1ZZ3A 5THUA 3RLAA 1ZZ1A 1RLAA 3Q9EA 4MYLA 1TBLA 3E6VA 4Q3SA 5G0XA 1XFKA 3MZ4A 4QA6A 4QA0A 5BWZA 3SFHA 5FCWA 1R1OA 2EIVA 4ZUNA 4MXRA 1P8RA 4QA1A 5G12A 1T69A 2V5WA 4Q41A 4LY1A 5EFKB 5G13A 2VQOA 5EFGA 4RN2A 1ZPEA 1T4TA 4RLAA 3THJA 1PQ3A 5JI5A 1P8PA 1HQXA 1ZZ0A 4CQFA 4FCKA 4GWDA 4Q3TA 4RHLA 3THHA 5THVA 4IXUA 4MYKA 1W22A 2VCGA 3MFWA 5IX0A 3GMZA 3SL0A 1TBHA 4QA5A 5G11A 4CBYA 4IE3A 3NIOA 4QA7A 1P8OA 5A2SA 5CEVA 1WOHA 1ZPGA 3MJLA 1T5GA 3EZTA 5EF8A 4I06A 4ZUQA 5EEKA 5EFHA 1T4RA 5G1BA 4HZEA 5DC6A 3RQDA 2A0MA 4Q40A 4RN0A 1WVAA 3SJTA 4ITYA 4ZURA 5EFBD 4RHKA 5ICNB 4RHJA 4QA4A 3LP4A 3GN0A 1T4PA 1TA1A 2VQMA 4RHMA 4MYNA 4Q3RA 2AEBA 3MAXA 5EEIA 3SL1A 1TBJA 3LP7A 3EW8A 5G1AA 5G0IA 4Q3QA 5LI3A 3THEA 5G10A 4BZ7A 1C3SA 2VQQA 4GWCA 5D1CA 2V5XA 2VQWG 4LXZA 4CBTA 3E8QA 4QA3A 3C0ZA 1WVBA 3EWFA 1HQFA 1P8SA 2EF5A 5EENA 5THTA 4GSZA 1HQ5A 3Q9CA 4QA2A 4Q3PA 2PHOA 1WOGA 3E6KA 3Q9FA 4IU5A 3Q9BA 1T5FA 1T64A 5G17A 5D1BA 3MENA
chains in the Genus database with same CATH topology
4GSMA 3MMRA 3DJ8A 4MYFA 3F80A 1HQGA 2CEVA 2RLAA 4IU1A 1T4SA 2PLLA 2ZAVA 1HQHA 3NIPA 5HJ9A 4DZ4A 4G3HA 3M1RA 4HWWA 4GSVA 4FCIA 4IU0A 3E8ZA 3TH7A 4RHQA 1GQ6A 3NIQA 5HJAA 5RLAA 4IE1A 1CEVA 1D3VA 4IE2A 4HXQA 3LHLA 4Q42A 3SKKA 3CEVA 1WOIA 3TF3A 1P8QA 3PZLA 4RHIA 1GQ7A 2EF4A 4Q3UA 4CEVA 1P8MA 4Q3RC 2PHAA 3E9BA 4IU4A 3MFVA 1P8NA 3KV2A 3RLAA 4IXVA 4Q3VA 1RLAA 4MYLA 1TBLA 3E6VA 4Q3SA 1XFKA 1R1OA 2EIVA 4MXRA 1P8RA 4Q41A 1ZPEA 1T4TA 4RLAA 3THJA 1PQ3A 1P8PA 1HQXA 4FCKA 4GWDA 4Q3TA 4RHLA 3THHA 4IXUA 4MYKA 3MFWA 3GMZA 3SL0A 1TBHA 4IE3A 3NIOA 1P8OA 5CEVA 1WOHA 1ZPGA 3MJLA 1T5GA 4I06A 1T4RA 4HZEA 2A0MA 4Q40A 1WVAA 3SJTA 4ITYA 4RHKA 4RHJA 3LP4A 3GN0A 1T4PA 1TA1A 4RHMA 4MYNA 4Q3RA 2AEBA 3SL1A 1TBJA 3LP7A 4Q3QA 3THEA 4GWCA 3E8QA 1WVBA 1HQFA 1P8SA 2EF5A 4GSZA 1HQ5A 4Q3PA 2PHOA 1WOGA 3E6KA 4IU5A 1T5FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GSM A;  3MMR A;  3DJ8 A;  4MYF A;  3F80 A;  1HQG A;  2CEV A;  2RLA A;  4IU1 A;  1T4S A;  2PLL A;  2ZAV A;  1HQH A;  3NIP A;  5HJ9 A;  4DZ4 A;  4G3H A;  3M1R A;  4HWW A;  4GSV A;  4FCI A;  4IU0 A;  3E8Z A;  3TH7 A;  4RHQ A;  1GQ6 A;  3NIQ A;  5HJA A;  5RLA A;  4IE1 A;  1CEV A;  1D3V A;  4IE2 A;  4HXQ A;  3LHL A;  4Q42 A;  3SKK A;  3CEV A;  1WOI A;  3TF3 A;  1P8Q A;  3PZL A;  4RHI A;  1GQ7 A;  2EF4 A;  4Q3U A;  4CEV A;  1P8M A;  4Q3R C;  2PHA A;  3E9B A;  4IU4 A;  3MFV A;  1P8N A;  3KV2 A;  3RLA A;  4IXV A;  4Q3V A;  1RLA A;  4MYL A;  1TBL A;  3E6V A;  4Q3S A;  1XFK A;  1R1O A;  2EIV A;  4MXR A;  1P8R A;  4Q41 A;  1ZPE A;  1T4T A;  4RLA A;  3THJ A;  1PQ3 A;  1P8P A;  1HQX A;  4FCK A;  4GWD A;  4Q3T A;  4RHL A;  3THH A;  4IXU A;  4MYK A;  3MFW A;  3GMZ A;  3SL0 A;  1TBH A;  4IE3 A;  3NIO A;  1P8O A;  5CEV A;  1WOH A;  1ZPG A;  3MJL A;  1T5G A;  4I06 A;  1T4R A;  4HZE A;  2A0M A;  4Q40 A;  1WVA A;  3SJT A;  4ITY A;  4RHK A;  4RHJ A;  3LP4 A;  3GN0 A;  1T4P A;  1TA1 A;  4RHM A;  4MYN A;  4Q3R A;  2AEB A;  3SL1 A;  1TBJ A;  3LP7 A;  4Q3Q A;  3THE A;  4GWC A;  3E8Q A;  1WVB A;  1HQF A;  1P8S A;  2EF5 A;  4GSZ A;  1HQ5 A;  4Q3P A;  2PHO A;  1WOG A;  3E6K A;  4IU5 A;  1T5F A; 
#chains in the Genus database with same CATH topology
 5EEF A;  4GSM A;  3MMR A;  3MZ7 A;  3DJ8 A;  3EZP A;  4MYF A;  3F80 A;  5G0Y A;  3C0Y A;  5G0H A;  1HQG A;  2CEV A;  4BKX B;  5G0J A;  2RLA A;  4IU1 A;  5EFN A;  3ZNS A;  1T4S A;  3MZ3 A;  2PLL A;  3F06 A;  2ZAV A;  1HQH A;  5EFJ D;  3NIP A;  5HJ9 A;  4DZ4 A;  1T67 A;  3SFF A;  4G3H A;  2GH6 A;  4ZUO A;  3MZ6 A;  5DC8 A;  3M1R A;  4HWW A;  4GSV A;  4FCI A;  3C10 A;  4IU0 A;  3E8Z A;  4BZ6 A;  3TH7 A;  4RHQ A;  1GQ6 A;  1VKG A;  2VQV A;  3NIQ A;  4ZUP A;  5HJA A;  5THS A;  4ZUM A;  5RLA A;  4IE1 A;  1CEV A;  4BZ8 A;  5G1C A;  1D3V A;  4IE2 A;  5DC5 A;  4HXQ A;  4A69 A;  5EF7 A;  3F0R A;  3LHL A;  4RN1 A;  4Q42 A;  5D1D A;  3CEV A;  5G3W A;  1C3R A;  5IWG A;  3SKK A;  1WOI A;  4BZ9 A;  2VQJ A;  3F07 A;  3TF3 A;  1P8Q A;  3PZL A;  4RHI A;  1GQ7 A;  2EF4 A;  4Q3U A;  5FUE A;  3ZNR A;  1P8M A;  4Q3R C;  2PHA A;  3E9B A;  4IU4 A;  5G0G A;  4CEV A;  3MFV A;  1P8N A;  5DC7 A;  4BZ5 A;  3KV2 A;  5EEM A;  4IXV A;  1C3P A;  4Q3V A;  1ZZ3 A;  5THU A;  3RLA A;  1ZZ1 A;  1RLA A;  3Q9E A;  4MYL A;  1TBL A;  3E6V A;  4Q3S A;  5G0X A;  1XFK A;  3MZ4 A;  4QA6 A;  4QA0 A;  5BWZ A;  3SFH A;  5FCW A;  1R1O A;  2EIV A;  4ZUN A;  4MXR A;  1P8R A;  4QA1 A;  5G12 A;  1T69 A;  2V5W A;  4Q41 A;  4LY1 A;  5EFK B;  5G13 A;  2VQO A;  5EFG A;  4RN2 A;  1ZPE A;  1T4T A;  4RLA A;  3THJ A;  1PQ3 A;  5JI5 A;  1P8P A;  1HQX A;  1ZZ0 A;  4CQF A;  4FCK A;  4GWD A;  4Q3T A;  4RHL A;  3THH A;  5THV A;  4IXU A;  4MYK A;  1W22 A;  2VCG A;  3MFW A;  5IX0 A;  3GMZ A;  3SL0 A;  1TBH A;  4QA5 A;  5G11 A;  4CBY A;  4IE3 A;  3NIO A;  4QA7 A;  1P8O A;  5A2S A;  5CEV A;  1WOH A;  1ZPG A;  3MJL A;  1T5G A;  3EZT A;  5EF8 A;  4I06 A;  4ZUQ A;  5EEK A;  5EFH A;  1T4R A;  5G1B A;  4HZE A;  5DC6 A;  3RQD A;  2A0M A;  4Q40 A;  4RN0 A;  1WVA A;  3SJT A;  4ITY A;  4ZUR A;  5EFB D;  4RHK A;  5ICN B;  4RHJ A;  4QA4 A;  3LP4 A;  3GN0 A;  1T4P A;  1TA1 A;  2VQM A;  4RHM A;  4MYN A;  4Q3R A;  2AEB A;  3MAX A;  5EEI A;  3SL1 A;  1TBJ A;  3LP7 A;  3EW8 A;  5G1A A;  5G0I A;  4Q3Q A;  5LI3 A;  3THE A;  5G10 A;  4BZ7 A;  1C3S A;  2VQQ A;  4GWC A;  5D1C A;  2V5X A;  2VQW G;  4LXZ A;  4CBT A;  3E8Q A;  4QA3 A;  3C0Z A;  1WVB A;  3EWF A;  1HQF A;  1P8S A;  2EF5 A;  5EEN A;  5THT A;  4GSZ A;  1HQ5 A;  3Q9C A;  4QA2 A;  4Q3P A;  2PHO A;  1WOG A;  3E6K A;  3Q9F A;  4IU5 A;  3Q9B A;  1T5F A;  1T64 A;  5G17 A;  5D1B A;  3MEN A; 
#chains in the Genus database with same CATH homology
 4GSM A;  3MMR A;  3DJ8 A;  4MYF A;  3F80 A;  1HQG A;  2CEV A;  2RLA A;  4IU1 A;  1T4S A;  2PLL A;  2ZAV A;  1HQH A;  3NIP A;  5HJ9 A;  4DZ4 A;  4G3H A;  3M1R A;  4HWW A;  4GSV A;  4FCI A;  4IU0 A;  3E8Z A;  3TH7 A;  4RHQ A;  1GQ6 A;  3NIQ A;  5HJA A;  5RLA A;  4IE1 A;  1CEV A;  1D3V A;  4IE2 A;  4HXQ A;  3LHL A;  4Q42 A;  3SKK A;  3CEV A;  1WOI A;  3TF3 A;  1P8Q A;  3PZL A;  4RHI A;  1GQ7 A;  2EF4 A;  4Q3U A;  4CEV A;  1P8M A;  4Q3R C;  2PHA A;  3E9B A;  4IU4 A;  3MFV A;  1P8N A;  3KV2 A;  3RLA A;  4IXV A;  4Q3V A;  1RLA A;  4MYL A;  1TBL A;  3E6V A;  4Q3S A;  1XFK A;  1R1O A;  2EIV A;  4MXR A;  1P8R A;  4Q41 A;  1ZPE A;  1T4T A;  4RLA A;  3THJ A;  1PQ3 A;  1P8P A;  1HQX A;  4FCK A;  4GWD A;  4Q3T A;  4RHL A;  3THH A;  4IXU A;  4MYK A;  3MFW A;  3GMZ A;  3SL0 A;  1TBH A;  4IE3 A;  3NIO A;  1P8O A;  5CEV A;  1WOH A;  1ZPG A;  3MJL A;  1T5G A;  4I06 A;  1T4R A;  4HZE A;  2A0M A;  4Q40 A;  1WVA A;  3SJT A;  4ITY A;  4RHK A;  4RHJ A;  3LP4 A;  3GN0 A;  1T4P A;  1TA1 A;  4RHM A;  4MYN A;  4Q3R A;  2AEB A;  3SL1 A;  1TBJ A;  3LP7 A;  4Q3Q A;  3THE A;  4GWC A;  3E8Q A;  1WVB A;  1HQF A;  1P8S A;  2EF5 A;  4GSZ A;  1HQ5 A;  4Q3P A;  2PHO A;  1WOG A;  3E6K A;  4IU5 A;  1T5F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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